Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 3.6e-108 394.8 186 100.0
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 3.6e-108 394.8 186 100.0
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 4.2e-96 354.8 186 86.0
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 6.0e-95 350.9 186 84.9
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 3.0e-94 348.6 185 84.9
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 3.9e-94 348.2 187 87.7
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 3.9e-94 348.2 187 87.7
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 6.6e-94 347.4 186 84.4
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 1.6e-92 342.8 183 84.7
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 6.2e-92 340.9 186 83.9
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.8e-91 339.3 186 82.3
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.2e-90 336.7 181 86.2
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 1.5e-90 336.3 184 82.6
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 2.0e-90 335.9 184 81.0
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 2.0e-90 335.9 184 81.0
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 4.5e-90 334.7 185 80.0
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 5.8e-90 334.3 184 81.5
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 7.6e-90 334.0 184 82.1
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 2.9e-89 332.0 184 81.5
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.9e-89 332.0 185 80.0
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 3.8e-89 331.6 184 81.5
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.9e-89 331.3 184 80.4
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.9e-89 331.3 184 80.4
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 6.4e-89 330.9 184 79.9
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 1.9e-88 329.3 178 81.5
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.9e-88 329.3 179 83.2
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 2.4e-88 328.9 184 79.3
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 5.4e-88 327.8 184 78.8
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 5.4e-88 327.8 180 81.1
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 7.1e-88 327.4 181 81.8
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 9.3e-88 327.0 183 78.7
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 9.3e-88 327.0 179 81.6
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 9.3e-88 327.0 186 79.0
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 1.2e-87 326.6 184 78.8
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 1.6e-87 326.2 199 75.9
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 1.6e-87 326.2 183 79.2
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 1.6e-87 326.2 181 79.6
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 1.6e-87 326.2 185 78.9
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 1.6e-87 326.2 182 79.7
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.6e-87 326.2 215 72.6
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.1e-87 325.9 176 81.2
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 2.7e-87 325.5 185 78.4
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 2.7e-87 325.5 185 78.4
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 3.5e-87 325.1 184 81.0
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 4.6e-87 324.7 203 74.4
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 6.0e-87 324.3 179 81.6
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 6.0e-87 324.3 179 81.6
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 6.0e-87 324.3 181 81.2
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 6.0e-87 324.3 179 82.7
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 1.0e-86 323.6 183 78.1
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 1.3e-86 323.2 185 81.1
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 1.3e-86 323.2 187 79.1
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 1.8e-86 322.8 180 80.6
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 1.8e-86 322.8 184 77.7
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 3.9e-86 321.6 184 78.3
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 5.1e-86 321.2 180 79.4
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 8.7e-86 320.5 180 80.0
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.7e-86 320.5 183 77.6
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.7e-86 320.5 183 77.6
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 8.7e-86 320.5 181 77.3
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 1.1e-85 320.1 184 77.2
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.5e-85 319.7 180 80.0
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.9e-85 319.3 183 77.6
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 2.5e-85 318.9 177 80.8
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.6e-85 317.8 183 77.0
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 7.4e-85 317.4 177 80.2
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 7.4e-85 317.4 177 80.2
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.4e-85 317.4 183 76.5
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 7.4e-85 317.4 184 77.2
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 1.6e-84 316.2 180 77.8
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 1.6e-84 316.2 180 77.2
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 2.1e-84 315.8 180 77.2
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 2.1e-84 315.8 184 77.2
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.1e-84 315.8 168 85.1
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.1e-84 315.8 205 71.7
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 4.8e-84 314.7 178 75.3
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 4.8e-84 314.7 180 77.8
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 8.1e-84 313.9 180 77.2
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 8.1e-84 313.9 177 79.1
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 1.8e-83 312.8 183 75.4
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.8e-83 312.8 184 75.5
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.4e-83 312.4 178 77.0
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.0e-83 311.6 183 75.4
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.3e-83 311.2 183 75.4
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 5.3e-83 311.2 184 75.0
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 6.9e-83 310.8 183 75.4
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 9.0e-83 310.5 184 75.0
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 2.6e-82 308.9 182 73.1
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 5.8e-82 307.8 200 72.5
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 4.9e-81 304.7 156 86.5
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.4e-80 303.1 182 72.5
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.2e-79 300.1 178 75.8
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.7e-79 298.9 204 67.2
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.8e-78 296.2 165 83.0
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.5e-77 293.1 225 61.8
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.9e-77 292.7 225 61.3
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 3.7e-76 288.5 171 78.9
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 1.4e-75 286.6 158 81.6
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.1e-75 285.4 162 77.8
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.1e-75 285.4 180 71.7
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 5.3e-75 284.6 282 54.3
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 6.9e-75 284.3 183 70.5
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.7e-73 279.6 151 80.8
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 1.7e-73 279.6 159 78.0
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.2e-73 279.3 175 72.0
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.2e-73 279.3 175 72.0
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 3.8e-73 278.5 156 79.5
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 2.5e-72 275.8 186 66.7
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 5.5e-72 274.6 181 66.9
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.6e-71 273.1 157 77.1
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 4.6e-71 271.6 185 69.7
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 8.7e-70 267.3 185 70.3
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 1.1e-69 266.9 157 75.8
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.5e-69 266.5 152 80.3
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 2.8e-68 262.3 182 65.9
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.1e-67 260.4 206 60.7
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 1.5e-66 256.5 147 75.5
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 1.3e-65 253.4 186 66.1
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.9e-64 249.6 140 77.9
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 6.1e-63 244.6 194 66.0
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 7.4e-61 237.7 187 56.7
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 1.6e-55 219.9 182 57.7
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.6e-55 218.8 118 79.7
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 3.6e-55 218.8 144 64.6
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 3.3e-53 212.2 184 57.6
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 1.4e-51 206.8 202 53.0
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.0e-49 200.7 206 48.1
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.6e-47 193.4 175 47.4
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.6e-47 193.4 175 47.4
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.4e-46 190.3 91 92.3
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 9.7e-45 184.1 192 53.1
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 3.7e-44 182.2 122 67.2
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 6.3e-44 181.4 209 41.6
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.9e-40 169.9 88 83.0
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 3.6e-39 165.6 178 42.7
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 3.6e-39 165.6 164 48.8
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.1e-39 164.9 141 56.0
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.4e-37 158.7 182 40.7
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.1e-35 152.1 147 52.4
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 5.3e-35 151.8 166 42.2
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 5.0e-33 145.2 92 64.1
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 4.8e-28 128.6 93 60.2
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 1.5e-13 80.5 46 76.1
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 3.7e-12 75.9 44 79.5
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 3.9e-09 65.9 43 74.4
Actinidia38479 Actinidia chinensis HOM05D002335 ORTHO05D006692 5.2e-06 55.5 29 86.2


User provided reference genes

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