Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.9e-245 852.0 421 100.0
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.2e-222 775.4 404 95.8
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 2.7e-199 698.7 403 85.9
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.5e-194 682.9 399 85.5
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 2.3e-190 669.1 404 80.0
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.9e-185 652.1 368 86.4
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 7.0e-184 647.5 404 78.7
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 1.3e-182 643.3 426 77.0
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 6.6e-182 641.0 426 76.8
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 8.6e-182 640.6 404 77.2
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.5e-181 639.8 416 75.2
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 2.5e-181 639.0 406 77.3
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.6e-180 636.3 404 78.2
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 2.1e-180 636.0 402 76.9
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 3.6e-180 635.2 412 77.2
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 4.7e-180 634.8 406 77.1
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 8.0e-180 634.0 403 78.9
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 1.8e-179 632.9 410 77.6
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 1.8e-179 632.9 410 77.6
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 2.3e-179 632.5 414 74.6
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 4.0e-179 631.7 406 77.1
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 6.8e-179 630.9 400 77.5
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.2e-178 630.2 445 72.8
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 2.0e-178 629.4 403 76.7
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 3.4e-178 628.6 401 79.3
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 7.5e-178 627.5 420 76.0
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.4e-176 622.5 410 74.9
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 5.4e-176 621.3 404 75.2
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 1.6e-175 619.8 402 76.1
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 1.0e-174 617.1 421 72.7
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.3e-174 616.7 394 76.4
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 1.7e-174 616.3 410 76.1
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.3e-174 615.9 398 77.6
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 3.0e-174 615.5 398 77.6
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 6.6e-174 614.4 352 83.8
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 8.6e-174 614.0 339 84.7
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.9e-173 612.8 398 76.4
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.5e-173 612.5 398 76.4
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 4.3e-173 611.7 406 74.6
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 5.6e-173 611.3 400 75.8
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 4.7e-172 608.2 395 76.5
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 4.7e-172 608.2 398 75.9
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 1.1e-171 607.1 393 75.6
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.4e-171 606.7 415 73.0
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 5.2e-171 604.7 355 80.6
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.2e-170 603.6 383 77.5
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.0e-170 602.8 411 73.0
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 4.4e-170 601.7 407 74.4
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 4.4e-170 601.7 349 81.4
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 5.8e-170 601.3 405 74.1
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 5.8e-170 601.3 425 72.7
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 9.9e-170 600.5 405 73.3
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 1.7e-169 599.7 411 72.5
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 3.7e-169 598.6 433 69.5
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 6.4e-169 597.8 405 73.3
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 2.4e-168 595.9 402 75.6
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 5.4e-168 594.7 401 74.3
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 5.4e-168 594.7 414 72.7
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 7.1e-168 594.3 407 74.0
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 7.1e-168 594.3 406 73.9
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 7.1e-168 594.3 400 74.2
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 9.2e-168 594.0 415 70.8
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.2e-167 593.6 333 83.5
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 1.6e-167 593.2 412 71.1
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 2.1e-167 592.8 405 72.8
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 4.6e-167 591.7 407 72.7
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 7.8e-167 590.9 366 77.9
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 1.0e-166 590.5 428 69.2
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 3.9e-166 588.6 413 71.2
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 6.6e-166 587.8 405 72.8
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.5e-165 586.6 416 70.0
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 1.5e-165 586.6 403 73.2
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 1.9e-165 586.3 403 72.2
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.9e-165 586.3 399 73.7
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.5e-165 585.9 415 69.9
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 2.5e-165 585.9 417 71.0
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 4.3e-165 585.1 366 76.8
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 5.6e-165 584.7 408 73.5
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 5.6e-165 584.7 402 72.1
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 9.5e-165 583.9 412 71.4
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 1.2e-164 583.6 347 80.7
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 2.1e-164 582.8 416 70.4
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 3.6e-164 582.0 412 70.9
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 4.7e-164 581.6 407 72.2
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 8.1e-164 580.9 397 71.5
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 1.4e-163 580.1 408 72.5
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.8e-163 579.7 399 71.2
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.8e-163 579.7 362 76.5
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 1.8e-163 579.7 341 79.5
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 3.1e-163 578.9 410 71.0
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 2.0e-162 576.2 398 71.4
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 2.0e-162 576.2 342 80.4
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 2.2e-161 572.8 359 73.0
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 6.4e-161 571.2 416 69.0
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.1e-160 570.5 333 82.6
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 1.4e-160 570.1 411 69.6
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 3.5e-159 565.5 366 75.1
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 3.9e-158 562.0 330 79.7
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 6.6e-158 561.2 334 78.7
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 5.6e-157 558.1 412 70.1
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 5.6e-157 558.1 412 70.4
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 5.6e-157 558.1 412 70.4
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 2.1e-156 556.2 392 70.9
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 2.4e-155 552.7 366 76.0
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 6.9e-155 551.2 378 73.3
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 6.9e-155 551.2 364 73.1
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.5e-154 550.1 298 86.6
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 9.9e-154 547.4 416 66.6
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 6.4e-153 544.7 416 66.8
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 5.4e-152 541.6 376 67.8
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 5.1e-150 535.0 374 70.6
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 1.9e-149 533.1 374 70.3
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 2.5e-149 532.7 298 82.2
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.3e-148 530.4 332 74.4
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 2.1e-148 529.6 380 69.2
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 3.1e-147 525.8 399 66.7
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 5.3e-147 525.0 283 86.2
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 3.4e-146 522.3 415 65.3
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 2.9e-145 519.2 329 72.3
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 9.6e-141 504.2 357 66.7
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 2.8e-140 502.7 325 74.2
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.2e-138 497.3 435 63.0
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 2.0e-138 496.5 334 74.6
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 9.9e-138 494.2 328 70.7
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-134 482.6 279 80.3
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 7.4e-133 478.0 326 71.2
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.3e-129 467.2 335 65.1
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 7.9e-119 431.4 357 61.1
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 9.7e-117 424.5 337 59.1
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 9.1e-115 417.9 263 76.8
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 3.3e-109 399.4 283 70.0
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 5.7e-109 398.7 321 58.9
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 3.4e-106 389.4 299 60.9
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.7e-105 387.1 337 61.7
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.5e-96 356.7 258 70.9
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 8.8e-94 348.2 188 88.8
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.9e-88 330.5 236 71.2
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-85 320.9 362 50.6
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 2.9e-81 306.6 395 45.8
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 4.4e-77 292.7 157 86.6
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 5.6e-72 275.8 275 53.8
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 2.0e-66 257.3 143 80.4
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 3.0e-65 253.4 311 47.6
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-57 226.9 235 53.6
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.7e-55 219.5 231 54.1
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-49 200.3 295 43.1
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 5.2e-46 189.5 116 77.6
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 5.8e-45 186.0 132 68.9
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.8e-45 186.0 200 52.0
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 7.8e-42 175.6 200 51.0
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 7.8e-42 175.6 200 51.0
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-41 173.7 122 71.3
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 3.6e-31 140.2 232 40.5
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-30 138.7 159 50.9
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-30 138.7 159 50.9
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 8.4e-20 102.4 169 37.9
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 1.6e-18 98.2 53 79.2
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 1.6e-18 98.2 53 79.2
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 6.9e-14 82.8 51 74.5
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 2.8e-07 60.8 39 69.2
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 2.8e-07 60.8 47 59.6
Actinidia29603 Actinidia chinensis HOM05D000367 ORTHO05D002159 6.3e-07 59.7 41 70.7
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 8.2e-07 59.3 44 61.4


User provided reference genes

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