Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046209 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 5.9e-59 230.7 122 100.0
CSS0045042 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 7.3e-49 197.2 158 74.1
CSS0014342 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 5.4e-44 181.0 122 86.9
CSS0009907 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 4.3e-41 171.4 151 70.9
QL01p055435 Quercus lobata HOM05D001647 ORTHO05D017173 1.5e-22 109.8 101 66.3
QL10p050116 Quercus lobata HOM05D001647 ORTHO05D001191 1.5e-22 109.8 101 66.3
ClCG10G015540 Citrullus lanatus HOM05D001647 ORTHO05D001191 2.0e-22 109.4 69 85.5
Duzib212G0802 Durio zibethinus HOM05D001647 ORTHO05D001191 5.8e-22 107.8 140 50.7
Dinv22746 Davidia involucrata HOM05D001647 ORTHO05D001191 1.4e-20 103.2 143 54.5
Gohir.A09G211500 Gossypium hirsutum HOM05D001647 ORTHO05D001191 1.9e-20 102.8 134 53.0
Gorai.006G229000 Gossypium raimondii HOM05D001647 ORTHO05D001191 2.4e-20 102.4 134 53.0
Rhsim02G0081300 Rhododendron simsii HOM05D001647 ORTHO05D001191 2.4e-20 102.4 140 54.3
SGA_v2.0_scaffold221G42702 Striga asiatica HOM05D001647 ORTHO05D001191 2.4e-20 102.4 69 85.5
Lj3A10G10 Lonicera japonica HOM05D001647 ORTHO05D001191 5.4e-20 101.3 70 82.9
Prupe.1G196500 Prunus persica HOM05D001647 ORTHO05D001191 7.1e-20 100.9 69 79.7
Aqoxy6G01579 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 9.3e-20 100.5 70 82.9
Thecc.04G177300 Theobroma cacao HOM05D001647 ORTHO05D001191 9.3e-20 100.5 69 84.1
CiPaw.02G054100 Carya illinoinensis HOM05D001647 ORTHO05D001191 1.2e-19 100.1 139 48.9
Aqoxy6G01582 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 1.6e-19 99.8 70 82.9
COL.COLO4_16174 Corchorus olitorius HOM05D001647 ORTHO05D001191 2.7e-19 99.0 138 50.0
Atru.chr4.2956 Acer truncatum HOM05D001647 ORTHO05D001191 3.5e-19 98.6 70 81.4
Gohir.D09G205000 Gossypium hirsutum HOM05D001647 ORTHO05D001191 7.9e-19 97.4 134 51.5
MD04G1042300 Malus domestica HOM05D001647 ORTHO05D001191 1.0e-18 97.1 70 80.0
AUR62002323 Chenopodium quinoa HOM05D001647 ORTHO05D001191 1.7e-18 96.3 69 76.8
Cc04_g16720 Coffea canephora HOM05D001647 ORTHO05D001191 1.7e-18 96.3 70 80.0
MELO3C009824.2 Cucumis melo HOM05D001647 ORTHO05D001191 3.9e-18 95.1 69 76.8
Potri.007G129600 Populus trichocarpa HOM05D001647 ORTHO05D001191 5.1e-18 94.7 69 76.8
Ca_20792_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 6.6e-18 94.4 68 79.4
Lalb_Chr03g0026081 Lupinus albus HOM05D001647 ORTHO05D001191 8.7e-18 94.0 69 75.4
Ah.07g202130 Amaranthus hybridus HOM05D001647 ORTHO05D001191 1.1e-17 93.6 122 54.9
AUR62023863 Chenopodium quinoa HOM05D001647 ORTHO05D001191 1.9e-17 92.8 98 60.2
Lj6C11T4 Lonicera japonica HOM05D001647 ORTHO05D017173 7.3e-17 90.9 71 73.2
Sabra07G0105500 Salix brachista HOM05D001647 ORTHO05D001191 1.3e-16 90.1 69 72.5
Hund03168 Selenicereus undatus HOM05D001647 ORTHO05D017173 1.6e-16 89.7 69 76.8
RcHm_v2.0_Chr4g0406531 Rosa chinensis HOM05D001647 ORTHO05D001191 2.1e-16 89.4 87 65.5
BcaC01g04968 Brassica carinata HOM05D001647 ORTHO05D001191 2.8e-16 89.0 69 71.0
BolC3t15505H Brassica oleracea HOM05D001647 ORTHO05D001191 2.8e-16 89.0 69 71.0
CARHR121430 Cardamine hirsuta HOM05D001647 ORTHO05D001191 2.8e-16 89.0 69 72.5
A03p26360 Brassica napus HOM05D001647 ORTHO05D001191 3.6e-16 88.6 69 69.6
VMungo1127G2188 Vigna mungo HOM05D001647 ORTHO05D001191 4.8e-16 88.2 78 66.7
EL10Ac3g05979 Beta vulgaris HOM05D001647 ORTHO05D001191 8.1e-16 87.4 66 77.3
Cfa015176 Carpinus fangiana HOM05D001647 ORTHO05D001191 8.1e-16 87.4 101 59.4
ECA248G3160 Erigeron canadensis HOM05D001647 ORTHO05D001191 8.1e-16 87.4 70 75.7
Lj3g0005963 Lotus japonicus HOM05D001647 ORTHO05D001191 8.1e-16 87.4 69 72.5
THA.LOC104815857 Tarenaya hassleriana HOM05D001647 ORTHO05D001191 8.1e-16 87.4 69 73.9
C03p31620 Brassica napus HOM05D001647 ORTHO05D001191 1.4e-15 86.7 69 69.6
MBI08_g20601_MAGBIO Magnolia biondii HOM05D001647 ORTHO05D001191 2.4e-15 85.9 70 74.3
AL4G21530 Arabidopsis lyrata HOM05D001647 ORTHO05D001191 4.0e-15 85.1 69 72.5
AT2G28480 Arabidopsis thaliana HOM05D001647 ORTHO05D001191 4.0e-15 85.1 69 72.5
Aa31LG5G7750 Aethionema arabicum HOM05D001528 ORTHO05D002760 6.9e-15 84.3 119 52.9
Cc03_g11950 Coffea canephora HOM05D001647 ORTHO05D001191 9.0e-15 84.0 70 72.9
Psat7g209920 Pisum sativum HOM05D001647 ORTHO05D001191 9.0e-15 84.0 69 71.0
Sp4g11300 Schrenkiella parvula HOM05D001647 ORTHO05D001191 9.0e-15 84.0 69 71.0
Phvul.011G053900 Phaseolus vulgaris HOM05D001647 ORTHO05D001191 1.2e-14 83.6 69 69.6
MSTRG.27406 Avicennia marina HOM05D001647 ORTHO05D001191 1.5e-14 83.2 113 55.8
Migut.D01562 Erythranthe guttata HOM05D001647 ORTHO05D001191 2.0e-14 82.8 71 70.4
Carub.0004s0942 Capsella rubella HOM05D001647 ORTHO05D001191 2.6e-14 82.4 69 71.0
CsaV3_3G040890 Cucumis sativus L. HOM05D001647 ORTHO05D001191 2.6e-14 82.4 68 70.6
Nn1g09609 Nelumbo nucifera HOM05D001647 ORTHO05D001191 2.6e-14 82.4 70 71.4
BcaB01g03105 Brassica carinata HOM05D001647 ORTHO05D001191 3.4e-14 82.0 69 68.1
Ciclev10020228m.g Citrus clementina HOM05D001647 ORTHO05D001191 3.4e-14 82.0 70 71.4
ATR0824G265 Amborella trichopoda HOM05D001647 ORTHO05D017173 5.8e-14 81.3 70 70.0
Lsat_1_v5_gn_1_77501 Lactuca sativa HOM05D001647 ORTHO05D001191 5.8e-14 81.3 70 70.0
Cpa.g.sc9.296 Carica papaya HOM05D001647 ORTHO05D001191 9.9e-14 80.5 69 68.1
Thhalv10016829m.g Eutrema salsugineum HOM05D001647 ORTHO05D001191 9.9e-14 80.5 69 68.1
Sc19g0002950 Simmondsia chinensis HOM05D001647 ORTHO05D001191 9.9e-14 80.5 70 71.4
DCAR_009853 Daucus carota HOM05D001647 ORTHO05D001191 1.3e-13 80.1 107 54.2
TWI15G0581 Tripterygium wilfordii HOM05D001647 ORTHO05D001191 1.7e-13 79.7 69 66.7
FvH4_4g10890 Fragaria vesca HOM05D001647 ORTHO05D001191 2.9e-13 79.0 100 57.0
FAN12G2494 Fragaria x ananassa HOM05D001647 ORTHO05D001191 3.8e-13 78.6 100 56.0
Medtr4g067300 Medicago truncatula HOM05D001647 ORTHO05D001191 6.4e-13 77.8 68 69.1
C04p22880 Brassica napus HOM05D001647 ORTHO05D001191 8.4e-13 77.4 70 62.9
FAN17G2196 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.4e-12 76.6 100 56.0
unitig_37.g12021 Utricularia gibba HOM05D001647 ORTHO05D001191 1.9e-12 76.3 70 70.0
FAN07G0844 Fragaria x ananassa HOM05D001647 ORTHO05D001191 2.4e-12 75.9 100 54.0
Sed0028231 Sechium edule HOM05D001647 ORTHO05D001191 2.4e-12 75.9 69 68.1
Peaxi162Scf00141g00924 Petunia axillaris HOM05D001647 ORTHO05D001191 3.2e-12 75.5 69 68.1
Oeu053823.2 Olea europaea HOM05D001647 ORTHO05D001191 4.2e-12 75.1 78 61.5
SalBow3G2902 Salvia bowleyana HOM05D001647 ORTHO05D001191 7.1e-12 74.3 44 90.9
Glyma.12G051900 Glycine max HOM05D001647 ORTHO05D001191 9.3e-12 73.9 70 64.3
Manes.04G043600 Manihot esculenta HOM05D001647 ORTHO05D001191 1.6e-11 73.2 131 48.1
arahy.Tifrunner.gnm1.ann1.G4MAIF Arachis hypogaea HOM05D001647 ORTHO05D001191 2.1e-11 72.8 99 50.5
arahy.Tifrunner.gnm1.ann1.0Q1I8G Arachis hypogaea HOM05D001647 ORTHO05D001191 3.5e-11 72.0 141 41.8
CDE02G4217 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 7.9e-11 70.9 61 72.1
BolC4t23784H Brassica oleracea HOM05D001647 ORTHO05D001191 1.5e-09 66.6 70 57.1
HanXRQChr01g0023811 Helianthus annuus HOM05D001647 ORTHO05D001191 5.6e-09 64.7 110 47.3
PSO732G0352 Papaver somniferum HOM05D000793 ORTHO05D001191 9.6e-09 63.9 72 59.7
PGSC0003DMG400011786 Solanum tuberosum HOM05D001647 ORTHO05D001191 2.8e-08 62.4 43 79.1
BcaB02g10162 Brassica carinata HOM05D001647 ORTHO05D001191 3.7e-08 62.0 125 44.8
Rhsim05G0023400 Rhododendron simsii HOM05D010576 ORTHO05D012109 3.7e-08 62.0 78 52.6
Cc03_g12360 Coffea canephora HOM05D001647 ORTHO05D001191 8.1e-08 60.8 44 84.1
Solyc09g005270.3 Solanum lycopersicum HOM05D001647 ORTHO05D001191 1.8e-07 59.7 73 56.2
GSVIVG01010789001 Vitis vinifera HOM05D001647 ORTHO05D001191 1.8e-07 59.7 44 84.1
Nitab4.5_0000335g0080 Nicotiana tabacum HOM05D001647 ORTHO05D001191 5.3e-07 58.2 75 57.3
TPR.G34241 Trifolium pratense HOM05D001647 ORTHO05D001191 5.3e-07 58.2 69 55.1
Sopen09g001240 Solanum pennellii HOM05D001647 ORTHO05D001191 1.2e-06 57.0 43 74.4
Nitab4.5_0000511g0050 Nicotiana tabacum HOM05D001647 ORTHO05D001191 4.5e-06 55.1 73 52.1


User provided reference genes

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