Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.6e-64 248.1 123 100.0
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.6e-57 224.2 119 92.4
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.1e-56 222.2 111 99.1
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 8.1e-56 220.3 119 91.6
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.1e-55 219.9 119 92.4
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 1.8e-55 219.2 119 89.9
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 4.0e-55 218.0 119 89.1
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 9.0e-55 216.9 119 89.9
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.2e-54 216.5 119 89.1
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 2.0e-54 215.7 118 89.0
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 2.0e-54 215.7 119 89.1
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 2.6e-54 215.3 119 89.1
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 2.6e-54 215.3 119 89.9
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 5.8e-54 214.2 119 88.2
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 1.3e-53 213.0 119 87.4
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 1.7e-53 212.6 118 87.3
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 3.8e-53 211.5 119 86.6
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 8.4e-53 210.3 119 87.4
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 1.9e-52 209.1 117 86.3
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 1.9e-52 209.1 119 86.6
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 1.9e-52 209.1 119 85.7
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 2.4e-52 208.8 119 86.6
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 4.2e-52 208.0 119 85.7
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 4.2e-52 208.0 119 86.6
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 5.4e-52 207.6 119 84.0
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 5.4e-52 207.6 117 85.5
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 9.3e-52 206.8 119 84.9
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 9.3e-52 206.8 119 85.7
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 1.2e-51 206.5 117 86.3
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 1.2e-51 206.5 119 85.7
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 1.6e-51 206.1 114 87.7
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 2.1e-51 205.7 113 86.7
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 3.5e-51 204.9 119 82.4
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 7.8e-51 203.8 119 83.2
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.0e-50 203.4 109 89.0
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 1.3e-50 203.0 119 83.2
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 1.3e-50 203.0 109 88.1
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.3e-50 203.0 119 84.0
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 1.7e-50 202.6 109 89.0
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 1.7e-50 202.6 119 82.4
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 1.7e-50 202.6 117 82.9
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 1.7e-50 202.6 109 89.0
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 2.3e-50 202.2 119 83.2
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 3.9e-50 201.4 110 87.3
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 6.6e-50 200.7 119 83.2
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 6.6e-50 200.7 119 83.2
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 6.6e-50 200.7 119 83.2
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 6.6e-50 200.7 117 82.9
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 8.7e-50 200.3 119 81.5
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 8.7e-50 200.3 119 81.5
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 8.7e-50 200.3 119 82.4
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.1e-49 199.9 109 88.1
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 1.1e-49 199.9 119 81.5
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 1.9e-49 199.1 119 80.7
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 1.9e-49 199.1 119 82.4
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 2.5e-49 198.7 117 82.1
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 2.5e-49 198.7 119 80.7
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 3.3e-49 198.4 117 83.8
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.3e-49 198.4 119 79.8
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 4.3e-49 198.0 119 80.7
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 4.3e-49 198.0 119 82.4
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 4.3e-49 198.0 119 82.4
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 5.6e-49 197.6 119 80.7
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 5.6e-49 197.6 119 79.8
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 5.6e-49 197.6 119 79.8
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 9.6e-49 196.8 117 82.1
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 9.6e-49 196.8 109 86.2
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 9.6e-49 196.8 119 82.4
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 1.3e-48 196.4 117 80.3
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 1.6e-48 196.1 117 81.2
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 1.6e-48 196.1 119 82.4
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 2.1e-48 195.7 119 79.0
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.8e-48 195.3 119 79.0
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 4.8e-48 194.5 119 79.8
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 4.8e-48 194.5 120 80.8
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 6.2e-48 194.1 109 85.3
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 1.1e-47 193.4 117 80.3
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 1.1e-47 193.4 119 78.2
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 1.4e-47 193.0 119 78.2
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 6.9e-47 190.7 117 79.5
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 9.0e-47 190.3 119 78.2
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 9.0e-47 190.3 109 83.5
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 1.2e-46 189.9 109 82.6
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 2.6e-46 188.7 119 77.3
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 3.4e-46 188.3 109 81.7
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 7.6e-46 187.2 109 79.8
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 7.6e-46 187.2 109 80.7
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 7.6e-46 187.2 119 78.2
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 9.9e-46 186.8 111 82.0
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 9.9e-46 186.8 111 82.0
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 9.9e-46 186.8 107 84.1
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 3.8e-45 184.9 112 77.7
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 4.9e-45 184.5 109 80.7
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 6.4e-45 184.1 107 85.0
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 8.4e-45 183.7 109 81.7
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 1.4e-44 183.0 109 79.8
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 1.4e-44 183.0 109 79.8
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 3.2e-44 181.8 109 80.7
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 5.4e-44 181.0 119 74.8
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 5.4e-44 181.0 117 74.4
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 7.1e-44 180.6 118 73.7
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 7.1e-44 180.6 119 74.8
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 9.3e-44 180.3 107 81.3
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 9.3e-44 180.3 109 77.1
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 1.6e-43 179.5 109 78.0
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 3.5e-43 178.3 109 78.9
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 7.9e-43 177.2 105 81.9
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 1.0e-42 176.8 118 75.4
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.3e-42 176.4 136 66.9
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 1.8e-42 176.0 117 73.5
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 1.5e-41 172.9 112 75.9
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.9e-41 172.6 109 75.2
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.3e-41 171.8 125 70.4
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 1.3e-40 169.9 109 75.2
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 8.1e-40 167.2 138 63.8
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.4e-39 166.4 112 70.5
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 1.2e-38 163.3 109 70.6
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 2.0e-38 162.5 96 82.3
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 9.9e-38 160.2 97 80.4
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 9.9e-38 160.2 96 81.2
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 9.9e-38 160.2 111 70.3
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.7e-37 159.5 95 81.1
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.9e-36 156.0 119 68.1
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 1.6e-35 152.9 123 68.3
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 3.5e-35 151.8 100 75.0
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 3.9e-34 148.3 97 74.2
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 9.0e-31 137.1 87 78.2
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 3.4e-30 135.2 104 59.6
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 7.6e-30 134.0 118 56.8
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 3.8e-29 131.7 133 52.6
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 1.9e-25 119.4 131 48.9
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 5.7e-25 117.9 89 56.2
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 2.8e-24 115.5 82 72.0
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 6.3e-24 114.4 101 54.5
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.9e-13 79.0 39 94.9
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 6.1e-11 71.2 39 92.3
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.0e-09 66.2 41 75.6
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 9.1e-07 57.4 66 40.9


User provided reference genes

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