Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.9e-241 838.2 436 100.0
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 5.7e-213 744.2 436 89.4
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 5.4e-203 711.1 439 85.0
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.1e-200 703.4 437 83.8
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.5e-200 703.0 439 83.6
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 3.3e-200 701.8 453 81.2
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 7.2e-200 700.7 432 84.3
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.2e-199 699.9 436 84.4
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.0e-197 692.6 440 83.9
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 5.7e-197 691.0 432 83.6
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 5.7e-197 691.0 437 83.1
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 7.0e-195 684.1 433 82.7
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 5.9e-194 681.0 432 82.6
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 1.7e-193 679.5 432 80.6
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.9e-192 676.0 436 80.5
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.2e-191 673.3 432 81.2
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 2.1e-191 672.5 430 81.4
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 3.6e-191 671.8 437 82.4
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 4.7e-191 671.4 432 82.4
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.0e-190 670.2 434 82.0
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 3.1e-190 668.7 432 82.2
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 1.7e-188 662.9 437 79.9
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 1.7e-188 662.9 430 78.4
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.9e-188 662.1 432 80.3
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 3.7e-188 661.8 427 82.9
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 3.7e-188 661.8 427 82.9
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 4.9e-188 661.4 468 76.9
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 6.4e-188 661.0 427 82.7
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 6.4e-188 661.0 427 82.7
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 6.4e-188 661.0 427 82.7
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.9e-187 659.4 423 81.6
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.9e-187 659.4 427 82.9
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 4.6e-186 654.8 436 78.9
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 6.0e-186 654.4 437 79.2
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 1.7e-185 652.9 436 79.1
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 3.0e-185 652.1 436 76.8
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 3.9e-185 651.7 427 81.5
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 8.6e-185 650.6 439 78.4
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.1e-184 650.2 451 78.9
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 1.1e-184 650.2 437 77.6
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 9.5e-184 647.1 427 81.0
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 1.2e-183 646.7 427 80.8
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.2e-183 644.4 437 76.9
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 8.0e-183 644.0 427 80.8
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 1.1e-182 643.7 431 78.2
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 1.4e-182 643.3 432 79.9
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 3.1e-182 642.1 431 78.2
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 4.0e-182 641.7 427 80.8
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 5.2e-182 641.3 433 78.5
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 1.2e-181 640.2 437 77.1
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.2e-181 640.2 437 77.1
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.2e-181 640.2 436 77.5
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 2.0e-181 639.4 435 75.9
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 2.6e-181 639.0 432 78.2
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.8e-181 637.9 437 76.7
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 7.5e-181 637.5 426 77.5
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.7e-180 636.3 420 78.1
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 3.7e-180 635.2 454 75.8
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 4.9e-180 634.8 427 79.9
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 4.9e-180 634.8 438 76.5
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 8.3e-180 634.0 437 76.2
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 1.1e-179 633.6 437 76.2
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 9.2e-179 630.6 427 79.9
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 9.2e-179 630.6 446 74.7
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 1.2e-178 630.2 437 75.5
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 1.6e-178 629.8 481 73.0
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 3.5e-178 628.6 437 75.1
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 6.0e-178 627.9 428 77.3
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 2.3e-177 625.9 439 76.1
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 2.3e-177 625.9 431 76.3
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 6.6e-177 624.4 422 77.0
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 8.6e-177 624.0 428 77.1
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 8.6e-177 624.0 446 76.0
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 1.5e-176 623.2 441 76.9
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 7.3e-176 620.9 428 76.4
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 7.3e-176 620.9 434 77.4
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 2.1e-175 619.4 437 74.4
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 6.2e-175 617.8 432 75.2
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 2.3e-174 615.9 427 78.2
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 1.2e-173 613.6 436 75.5
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 1.2e-173 613.6 432 73.8
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 1.5e-173 613.2 430 74.4
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 2.0e-173 612.8 430 76.7
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 1.7e-172 609.8 431 74.5
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 2.9e-172 609.0 427 78.2
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 4.9e-172 608.2 386 81.9
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 1.2e-170 603.6 422 75.1
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 2.1e-170 602.8 430 73.3
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 2.7e-170 602.4 426 75.6
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.0e-170 601.3 437 73.0
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 8.6e-169 597.4 404 78.2
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 4.3e-168 595.1 421 75.8
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.8e-167 592.4 472 70.1
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 5.2e-166 588.2 472 68.4
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.2e-165 587.0 428 72.0
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 7.6e-165 584.3 441 74.1
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 9.9e-165 583.9 522 64.8
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 3.5e-162 575.5 427 71.0
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 1.0e-161 573.9 440 68.9
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 8.7e-161 570.9 434 72.8
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 7.3e-160 567.8 518 61.0
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 2.1e-159 566.2 432 69.0
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 6.2e-159 564.7 436 72.7
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 3.1e-158 562.4 392 76.8
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 4.0e-158 562.0 390 80.0
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 7.1e-155 551.2 422 71.8
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.1e-154 549.7 438 69.9
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 8.1e-151 537.7 388 76.0
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 3.1e-150 535.8 503 63.0
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 7.6e-149 531.2 433 69.1
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 5.4e-147 525.0 431 66.4
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 7.9e-146 521.2 421 65.6
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 9.0e-142 507.7 380 73.2
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 3.2e-139 499.2 418 64.4
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 3.1e-134 482.6 418 60.8
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 7.6e-133 478.0 372 68.5
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 2.2e-132 476.5 396 68.2
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 2.5e-131 473.0 325 76.3
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 2.7e-130 469.5 446 57.0
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.6e-127 460.3 423 60.3
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 8.2e-127 458.0 345 70.4
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.1e-126 457.6 399 62.7
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 1.2e-122 444.1 429 58.5
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 3.6e-122 442.6 421 56.5
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.7e-119 433.7 436 58.5
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 7.4e-112 408.3 435 53.3
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.1e-110 402.5 356 62.4
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 2.2e-71 273.9 222 66.7
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 3.5e-69 266.5 382 40.3
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 2.1e-61 240.7 427 36.8
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 7.1e-38 162.5 208 49.0
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 2.7e-29 134.0 83 80.7
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.1e-18 97.8 46 97.8
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.1e-18 97.8 46 97.8
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 3.7e-18 97.1 55 85.5
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 6.5e-07 59.7 53 62.3
arahy.Tifrunner.gnm1.ann1.C7XXCR Arachis hypogaea HOM05D005555 ORTHO05D082991 1.4e-06 58.5 127 37.8


User provided reference genes

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