Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046161 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 6.9e-105 384.0 200 100.0
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 1.2e-21 107.5 75 76.0
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 1.8e-20 103.6 75 69.3
QL09p018218 Quercus lobata HOM05D002920 ORTHO05D003118 6.0e-16 88.6 75 62.7
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 3.0e-15 86.3 75 60.0
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 5.1e-15 85.5 75 60.0
vmacro21355 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 1.9e-14 83.6 75 65.3
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 3.3e-14 82.8 85 50.6
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 5.6e-14 82.0 75 54.7
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 7.3e-14 81.6 75 56.0
Haze_22482 Corylus avellana HOM05D002920 ORTHO05D003118 9.5e-14 81.3 75 60.0
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 2.1e-13 80.1 75 57.3
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 2.1e-13 80.1 75 58.7
Atru.chr13.988 Acer truncatum HOM05D002920 ORTHO05D003118 3.6e-13 79.3 75 60.0
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 4.7e-13 79.0 74 58.1
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 4.7e-13 79.0 75 53.3
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 6.2e-13 78.6 75 57.3
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.4e-12 77.4 75 52.0
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 1.4e-12 77.4 75 54.7
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 1.8e-12 77.0 75 53.3
vmacro04640 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 1.8e-12 77.0 75 58.7
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 2.4e-12 76.6 75 56.0
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 2.4e-12 76.6 75 56.0
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 3.1e-12 76.3 75 56.0
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 3.1e-12 76.3 75 50.7
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 4.0e-12 75.9 75 57.3
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 4.0e-12 75.9 75 53.3
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 4.0e-12 75.9 75 54.7
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 4.0e-12 75.9 75 53.3
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 5.2e-12 75.5 77 53.2
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 8.9e-12 74.7 75 50.7
MD08G1202500 Malus domestica HOM05D002920 ORTHO05D003118 1.2e-11 74.3 75 50.7
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 1.2e-11 74.3 75 50.7
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 1.5e-11 73.9 75 54.7
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 2.0e-11 73.6 75 54.7
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 2.6e-11 73.2 92 42.4
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 2.6e-11 73.2 75 48.0
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 2.6e-11 73.2 74 52.7
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 2.6e-11 73.2 75 54.7
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 5.8e-11 72.0 75 50.7
Cpa.g.sc21.38 Carica papaya HOM05D002920 ORTHO05D003118 7.6e-11 71.6 78 48.7
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 7.6e-11 71.6 75 50.7
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 9.9e-11 71.2 75 52.0
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 9.9e-11 71.2 75 46.7
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 9.9e-11 71.2 75 46.7
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 9.9e-11 71.2 75 50.7
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.3e-10 70.9 75 46.7
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 1.7e-10 70.5 75 52.0
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 2.2e-10 70.1 75 49.3
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 2.2e-10 70.1 77 61.0
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 2.9e-10 69.7 75 49.3
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 3.8e-10 69.3 76 51.3
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 1.1e-09 67.8 75 49.3
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 1.1e-09 67.8 75 53.3
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 1.1e-09 67.8 75 48.0
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.9e-09 67.0 75 49.3
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 3.2e-09 66.2 75 52.0
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 4.1e-09 65.9 73 54.8
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 4.1e-09 65.9 75 48.0
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 5.4e-09 65.5 75 42.7
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 7.1e-09 65.1 67 52.2
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 7.1e-09 65.1 76 56.6
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 7.1e-09 65.1 75 50.7
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 9.2e-09 64.7 83 50.6
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.6e-08 63.9 76 55.3
Solyc04g076550.3 Solanum lycopersicum HOM05D002920 ORTHO05D003118 1.6e-08 63.9 75 50.7
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 2.1e-08 63.5 75 52.0
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 3.5e-08 62.8 75 49.3
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 4.6e-08 62.4 75 48.0
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 7.8e-08 61.6 75 52.0
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 7.8e-08 61.6 74 50.0
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 2.3e-07 60.1 75 52.0
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 3.0e-07 59.7 75 46.7
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 3.9e-07 59.3 74 45.9
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 3.9e-07 59.3 74 45.9
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 3.9e-07 59.3 77 46.8
CAN.G1104.6 Capsicum annuum HOM05D002920 ORTHO05D003118 5.1e-07 58.9 76 48.7
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 5.1e-07 58.9 75 49.3
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 5.1e-07 58.9 75 48.0
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 5.1e-07 58.9 76 50.0
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 8.7e-07 58.2 77 42.9
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.5e-06 57.4 76 46.1
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 1.5e-06 57.4 76 47.4
CDE07G0230 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 1.9e-06 57.0 75 49.3
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 2.5e-06 56.6 74 44.6
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 4.3e-06 55.8 75 38.7
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 5.6e-06 55.5 75 41.3
A09p18500 Brassica napus HOM05D002920 ORTHO05D003118 5.6e-06 55.5 75 42.7
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 5.6e-06 55.5 75 41.3
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 5.6e-06 55.5 75 41.3
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 5.6e-06 55.5 75 42.7
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 5.6e-06 55.5 75 44.0
DCAR_024958 Daucus carota HOM05D002920 ORTHO05D003118 7.3e-06 55.1 75 48.0


User provided reference genes

Program Settings