Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 2.2e-35 151.8 76 100.0
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 7.1e-10 67.0 42 81.0
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 9.2e-10 66.6 43 74.4
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 1.6e-09 65.9 35 91.4
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 2.7e-09 65.1 42 76.2
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 3.5e-09 64.7 36 86.1
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 3.5e-09 64.7 39 82.1
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 4.6e-09 64.3 35 88.6
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 4.6e-09 64.3 35 88.6
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 6.0e-09 63.9 36 86.1
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 6.0e-09 63.9 36 86.1
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 6.0e-09 63.9 36 86.1
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 6.0e-09 63.9 36 86.1
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 6.0e-09 63.9 36 86.1
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 7.8e-09 63.5 36 86.1
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 1.0e-08 63.2 34 91.2
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 1.0e-08 63.2 34 91.2
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 1.3e-08 62.8 42 71.4
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.7e-08 62.4 36 83.3
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 1.7e-08 62.4 36 83.3
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 1.7e-08 62.4 35 88.6
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 2.3e-08 62.0 33 90.9
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 2.3e-08 62.0 33 90.9
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 2.3e-08 62.0 36 83.3
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 2.3e-08 62.0 36 83.3
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 2.3e-08 62.0 36 83.3
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 2.3e-08 62.0 35 82.9
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 2.3e-08 62.0 36 83.3
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 2.3e-08 62.0 33 90.9
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 3.0e-08 61.6 36 83.3
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 3.9e-08 61.2 36 80.6
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 3.9e-08 61.2 36 83.3
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 3.9e-08 61.2 35 82.9
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 5.1e-08 60.8 36 86.1
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 5.1e-08 60.8 36 80.6
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 5.1e-08 60.8 34 85.3
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 5.1e-08 60.8 36 83.3
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 5.1e-08 60.8 35 82.9
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 6.6e-08 60.5 42 71.4
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 6.6e-08 60.5 35 85.7
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 6.6e-08 60.5 33 87.9
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 8.7e-08 60.1 36 77.8
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 8.7e-08 60.1 33 87.9
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 8.7e-08 60.1 33 84.8
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 1.1e-07 59.7 34 85.3
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 1.1e-07 59.7 36 77.8
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 1.5e-07 59.3 36 80.6
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 1.5e-07 59.3 42 69.0
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 1.5e-07 59.3 35 85.7
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 1.5e-07 59.3 42 69.0
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 1.9e-07 58.9 36 80.6
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 3.3e-07 58.2 33 84.8
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 4.3e-07 57.8 36 75.0
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 7.3e-07 57.0 36 72.2
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 9.6e-07 56.6 36 75.0
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 1.2e-06 56.2 33 81.8
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 1.6e-06 55.8 36 75.0
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 1.6e-06 55.8 36 75.0
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 1.6e-06 55.8 36 72.2
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 1.6e-06 55.8 36 75.0
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 1.6e-06 55.8 32 87.5
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 2.1e-06 55.5 36 75.0
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 2.1e-06 55.5 36 69.4
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 2.8e-06 55.1 36 69.4
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 2.8e-06 55.1 36 69.4
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 2.8e-06 55.1 36 69.4
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 3.6e-06 54.7 42 66.7
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 3.6e-06 54.7 36 69.4
MBI02_g20368_MAGBIO Magnolia biondii HOM05D007703 ORTHO05D009731 3.6e-06 54.7 35 74.3
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 3.6e-06 54.7 39 66.7
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 4.7e-06 54.3 36 69.4
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 4.7e-06 54.3 36 69.4
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 4.7e-06 54.3 36 72.2
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 6.2e-06 53.9 33 75.8
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 8.1e-06 53.5 32 78.1
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 8.1e-06 53.5 38 71.1
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 8.1e-06 53.5 36 69.4
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 8.1e-06 53.5 41 63.4


User provided reference genes

Program Settings