Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046128 Camellia sinensis var. sinensis HOM05D000790 ORTHO05D000769 1.4e-34 149.1 75 100.0
CSS0047316 Camellia sinensis var. sinensis HOM05D000790 ORTHO05D000769 4.2e-31 137.5 69 100.0
CSS0050502 Camellia sinensis var. sinensis HOM05D000790 ORTHO05D000769 4.2e-31 137.5 69 100.0
CSS0020688 Camellia sinensis var. sinensis HOM05D000790 ORTHO05D000769 9.4e-31 136.3 69 98.6
CSS0009407 Camellia sinensis var. sinensis HOM05D000790 ORTHO05D000769 1.4e-29 132.5 68 97.1
CSS0020100 Camellia sinensis var. sinensis HOM05D000790 ORTHO05D000769 9.7e-28 126.3 69 95.7
COL.COLO4_17791 Corchorus olitorius HOM05D000790 ORTHO05D000769 3.9e-21 104.4 64 76.6
Thecc.02G030400 Theobroma cacao HOM05D000790 ORTHO05D000769 3.9e-21 104.4 69 72.5
Oeu007231.2 Olea europaea HOM05D000790 ORTHO05D000769 5.2e-21 104.0 68 72.1
Gohir.A03G213800 Gossypium hirsutum HOM05D000790 ORTHO05D000769 2.0e-20 102.1 69 71.0
Gohir.D02G235300 Gossypium hirsutum HOM05D000790 ORTHO05D000769 2.0e-20 102.1 69 71.0
Gohir.D12G041730 Gossypium hirsutum HOM05D000790 ORTHO05D000769 2.0e-20 102.1 69 69.6
Gorai.005G263400 Gossypium raimondii HOM05D000790 ORTHO05D000769 2.0e-20 102.1 69 71.0
Gorai.008G043700 Gossypium raimondii HOM05D000790 ORTHO05D000769 2.0e-20 102.1 69 69.6
Hma1.2p1_0584F.1_g183390 Hydrangea macrophylla HOM05D000790 ORTHO05D000769 2.6e-20 101.7 66 74.2
CiPaw.05G059800 Carya illinoinensis HOM05D000790 ORTHO05D000769 4.4e-20 100.9 63 77.8
Duzib052G0925 Durio zibethinus HOM05D000790 ORTHO05D000769 4.4e-20 100.9 69 71.0
Duzib132G0915 Durio zibethinus HOM05D000790 ORTHO05D000769 4.4e-20 100.9 69 72.5
GSVIVG01031897001 Vitis vinifera HOM05D000790 ORTHO05D000769 5.7e-20 100.5 63 74.6
Cpa.g.sc62.94 Carica papaya HOM05D000790 ORTHO05D000769 9.7e-20 99.8 73 69.9
Cc02_g18060 Coffea canephora HOM05D000790 ORTHO05D000769 9.7e-20 99.8 69 71.0
PGSC0003DMG400025162 Solanum tuberosum HOM05D000790 ORTHO05D000769 1.3e-19 99.4 62 75.8
CAN.G322.100 Capsicum annuum HOM05D000790 ORTHO05D000769 1.7e-19 99.0 68 69.1
Gohir.A12G030650 Gossypium hirsutum HOM05D000790 ORTHO05D000769 1.7e-19 99.0 69 68.1
Oeu027594.1 Olea europaea HOM05D000790 ORTHO05D000769 2.2e-19 98.6 67 70.1
TWI31G0030 Tripterygium wilfordii HOM05D000790 ORTHO05D000769 2.2e-19 98.6 68 69.1
Ciclev10029187m.g Citrus clementina HOM05D000790 ORTHO05D000769 2.8e-19 98.2 69 71.0
DCAR_022085 Daucus carota HOM05D000790 ORTHO05D000769 2.8e-19 98.2 70 71.4
Sopen01g051400 Solanum pennellii HOM05D000790 ORTHO05D000769 3.7e-19 97.8 68 67.6
Eucgr.I01234 Eucalyptus grandis HOM05D000790 ORTHO05D000769 4.8e-19 97.4 60 78.3
Nitab4.5_0003281g0020 Nicotiana tabacum HOM05D000790 ORTHO05D000769 4.8e-19 97.4 62 75.8
PGR142G0838 Punica granatum HOM05D000790 ORTHO05D000769 8.2e-19 96.7 66 72.7
FAN20G1816 Fragaria x ananassa HOM05D000790 ORTHO05D000769 1.4e-18 95.9 69 71.0
Solyc01g109230.3 Solanum lycopersicum HOM05D000790 ORTHO05D000769 1.4e-18 95.9 68 66.2
Nitab4.5_0003816g0090 Nicotiana tabacum HOM05D000790 ORTHO05D000769 1.8e-18 95.5 60 75.0
FvH4_2g07730 Fragaria vesca HOM05D000790 ORTHO05D000769 9.1e-18 93.2 61 78.7
FAN15G1787 Fragaria x ananassa HOM05D000790 ORTHO05D000769 9.1e-18 93.2 61 78.7
FAN24G1574 Fragaria x ananassa HOM05D000790 ORTHO05D000769 9.1e-18 93.2 61 78.7
HanXRQChr16g0506161 Helianthus annuus HOM05D000790 ORTHO05D000769 9.1e-18 93.2 71 67.6
MD10G1084700 Malus domestica HOM05D000790 ORTHO05D000769 9.1e-18 93.2 69 68.1
QL11p039625 Quercus lobata HOM05D000790 ORTHO05D000769 1.2e-17 92.8 63 68.3
Cfa004968 Carpinus fangiana HOM05D000790 ORTHO05D000769 1.6e-17 92.4 62 69.4
CiPaw.06G138400 Carya illinoinensis HOM05D000790 ORTHO05D000769 1.6e-17 92.4 63 69.8
Haze_02433 Corylus avellana HOM05D000790 ORTHO05D000769 1.6e-17 92.4 62 69.4
MD00G1018400 Malus domestica HOM05D000790 ORTHO05D000769 1.6e-17 92.4 69 68.1
Prupe.8G107600 Prunus persica HOM05D000790 ORTHO05D000769 1.6e-17 92.4 70 70.0
QL11p039630 Quercus lobata HOM05D000790 ORTHO05D000769 1.6e-17 92.4 63 69.8
RcHm_v2.0_Chr6g0262061 Rosa chinensis HOM05D000790 ORTHO05D000769 1.6e-17 92.4 67 71.6
Dinv23567 Davidia involucrata HOM05D000790 ORTHO05D000769 2.0e-17 92.0 55 80.0
Lsat_1_v5_gn_7_88700 Lactuca sativa HOM05D000790 ORTHO05D000769 2.0e-17 92.0 69 68.1
MELO3C021955.2 Cucumis melo HOM05D000790 ORTHO05D000769 2.6e-17 91.7 63 71.4
PSO675G5158 Papaver somniferum HOM05D000790 ORTHO05D000769 2.6e-17 91.7 63 73.0
Sed0020671 Sechium edule HOM05D000790 ORTHO05D000769 2.6e-17 91.7 63 73.0
Aqoxy6G00965 Aquilegia oxysepala HOM05D000790 ORTHO05D000769 3.5e-17 91.3 67 67.2
Nn1g05153 Nelumbo nucifera HOM05D000790 ORTHO05D000769 3.5e-17 91.3 66 68.2
Peaxi162Scf00016g01133 Petunia axillaris HOM05D000790 ORTHO05D000769 4.5e-17 90.9 69 65.2
ECA236G3395 Erigeron canadensis HOM05D000790 ORTHO05D000769 5.9e-17 90.5 69 66.7
Lj5A203T60 Lonicera japonica HOM05D000790 ORTHO05D000769 7.7e-17 90.1 69 71.0
vmacro02153 Vaccinium macrocarpon HOM05D000790 ORTHO05D000769 7.7e-17 90.1 64 73.4
ClCG09G017900 Citrullus lanatus HOM05D000790 ORTHO05D000769 1.0e-16 89.7 59 74.6
CsaV3_2G014510 Cucumis sativus L. HOM05D000790 ORTHO05D000769 1.0e-16 89.7 59 72.9
Sed0010596 Sechium edule HOM05D000790 ORTHO05D000769 1.0e-16 89.7 69 66.7
PSO541G1466 Papaver somniferum HOM05D000790 ORTHO05D000769 1.7e-16 89.0 63 71.4
Nn5g29451 Nelumbo nucifera HOM05D000790 ORTHO05D000769 2.2e-16 88.6 69 58.0
Manes.17G097900 Manihot esculenta HOM05D000790 ORTHO05D000769 2.9e-16 88.2 69 62.3
Actinidia27917 Actinidia chinensis HOM05D000790 ORTHO05D000769 3.8e-16 87.8 67 67.2
Rhsim11G0172000 Rhododendron simsii HOM05D000790 ORTHO05D000769 5.0e-16 87.4 73 61.6
MBI16_g13164_MAGBIO Magnolia biondii HOM05D000790 ORTHO05D000769 1.9e-15 85.5 62 64.5
TAR625G0981 Trochodendron aralioides HOM05D000790 ORTHO05D000769 3.2e-15 84.7 71 62.0
Dinv42100 Davidia involucrata HOM05D000790 ORTHO05D000769 4.2e-15 84.3 74 60.8
Manes.15G146800 Manihot esculenta HOM05D000790 ORTHO05D000769 4.2e-15 84.3 69 56.5
Lj3g0001815 Lotus japonicus HOM05D000790 ORTHO05D000769 7.2e-15 83.6 69 65.2
Lalb_Chr03g0025881 Lupinus albus HOM05D000790 ORTHO05D000769 9.4e-15 83.2 68 64.7
Glyma.12G046900 Glycine max HOM05D000790 ORTHO05D000769 1.2e-14 82.8 62 67.7
VMungo1127G1237 Vigna mungo HOM05D000790 ORTHO05D000769 1.2e-14 82.8 62 66.1
Lsat_1_v5_gn_5_118140 Lactuca sativa HOM05D000790 ORTHO05D000769 1.6e-14 82.4 68 60.3
CANSAT25G2763 Cannabis sativa HOM05D000790 ORTHO05D000769 2.1e-14 82.0 55 74.5
Migut.N01219 Erythranthe guttata HOM05D000790 ORTHO05D000769 2.7e-14 81.6 73 58.9
Glyma.11G122000 Glycine max HOM05D000790 ORTHO05D000769 4.7e-14 80.9 62 66.1
SGA_v2.0_scaffold13G06565 Striga asiatica HOM05D000790 ORTHO05D000769 4.7e-14 80.9 71 57.7
Phvul.011G048900 Phaseolus vulgaris HOM05D000790 ORTHO05D000769 8.0e-14 80.1 62 62.9
CDE04G0858 Ceratophyllum demersum HOM05D000790 ORTHO05D000769 1.0e-13 79.7 63 61.9
DCAR_029002 Daucus carota HOM05D000790 ORTHO05D000769 1.0e-13 79.7 70 61.4
SGA_v2.0_scaffold32G13134 Striga asiatica HOM05D000790 ORTHO05D000769 1.4e-13 79.3 69 59.4
ATR0733G168 Amborella trichopoda HOM05D000790 ORTHO05D000769 1.8e-13 79.0 71 53.5
vmacro19445 Vaccinium macrocarpon HOM05D000790 ORTHO05D000769 2.3e-13 78.6 61 70.5
vmacro23389 Vaccinium macrocarpon HOM05D000790 ORTHO05D000769 2.3e-13 78.6 61 70.5
MSTRG.20115 Avicennia marina HOM05D000790 ORTHO05D000769 4.0e-13 77.8 70 55.7
Rhsim05G0077900 Rhododendron simsii HOM05D000790 ORTHO05D000769 6.8e-13 77.0 60 70.0
SalBow6G2472 Salvia bowleyana HOM05D000790 ORTHO05D000769 6.8e-13 77.0 65 61.5
TWI75G0542 Tripterygium wilfordii HOM05D000790 ORTHO05D000769 6.8e-13 77.0 71 50.7
TPR.G29896 Trifolium pratense HOM05D000790 ORTHO05D000769 1.2e-12 76.3 75 60.0
Medtr4g068790 Medicago truncatula HOM05D000790 ORTHO05D000769 1.5e-12 75.9 77 57.1
Potri.009G110500 Populus trichocarpa HOM05D000790 ORTHO05D000769 2.0e-12 75.5 60 63.3
Lj2g0005114 Lotus japonicus HOM05D000790 ORTHO05D000769 2.6e-12 75.1 61 59.0
Lj2g0027407 Lotus japonicus HOM05D000790 ORTHO05D000769 2.6e-12 75.1 61 59.0
Sabra09G0084300 Salix brachista HOM05D000790 ORTHO05D000769 4.4e-12 74.3 60 61.7
Migut.B00281 Erythranthe guttata HOM05D000790 ORTHO05D000769 5.7e-12 73.9 68 61.8
THA.LOC104804360 Tarenaya hassleriana HOM05D000790 ORTHO05D000769 5.7e-12 73.9 64 59.4
Ca_20833_v3 Cicer arietinum L. HOM05D000790 ORTHO05D000769 9.7e-12 73.2 64 62.5
Potri.004G149500 Populus trichocarpa HOM05D000790 ORTHO05D000769 9.7e-12 73.2 60 65.0
Sabra04G0099400 Salix brachista HOM05D000790 ORTHO05D000769 9.7e-12 73.2 64 57.8
Dinv41854 Davidia involucrata HOM05D000790 ORTHO05D000769 1.3e-11 72.8 60 55.0
Nn6g31580 Nelumbo nucifera HOM05D000790 ORTHO05D000769 1.3e-11 72.8 61 57.4
Actinidia12985 Actinidia chinensis HOM05D000790 ORTHO05D000769 1.7e-11 72.4 53 71.7
Carub.0003s2986 Capsella rubella HOM05D000790 ORTHO05D000769 1.7e-11 72.4 65 56.9
Atru.chr5.3590 Acer truncatum HOM05D000790 ORTHO05D000769 2.8e-11 71.6 76 48.7
HPP92_019644 Vanilla planifolia HOM05D000790 ORTHO05D000769 2.8e-11 71.6 84 47.6
Aa31LG8G13500 Aethionema arabicum HOM05D000790 ORTHO05D000769 3.7e-11 71.2 65 56.9
SalBow3G2600 Salvia bowleyana HOM05D000790 ORTHO05D000769 3.7e-11 71.2 58 60.3
unitig_747.g21218 Utricularia gibba HOM05D000790 ORTHO05D000769 3.7e-11 71.2 71 56.3
BcaC06g36106 Brassica carinata HOM05D000790 ORTHO05D000769 4.8e-11 70.9 70 54.3
A07p04800 Brassica napus HOM05D000790 ORTHO05D000769 4.8e-11 70.9 70 54.3
C07p07720 Brassica napus HOM05D000790 ORTHO05D000769 4.8e-11 70.9 70 54.3
BolC7t41193H Brassica oleracea HOM05D000790 ORTHO05D000769 4.8e-11 70.9 70 54.3
BraA07t28270Z Brassica rapa HOM05D000790 ORTHO05D000769 4.8e-11 70.9 70 54.3
RcHm_v2.0_Chr6g0281581 Rosa chinensis HOM05D000790 ORTHO05D000769 4.8e-11 70.9 71 47.9
AT2G16050 Arabidopsis thaliana HOM05D000790 ORTHO05D000769 6.3e-11 70.5 65 56.9
CARHR106340 Cardamine hirsuta HOM05D000790 ORTHO05D000769 6.3e-11 70.5 65 55.4
Cfa005403 Carpinus fangiana HOM05D000790 ORTHO05D000769 6.3e-11 70.5 71 47.9
Thhalv10023200m.g Eutrema salsugineum HOM05D000790 ORTHO05D000769 6.3e-11 70.5 63 57.1
FAN15G1228 Fragaria x ananassa HOM05D000790 ORTHO05D000769 8.3e-11 70.1 71 47.9
Sp3g29300 Schrenkiella parvula HOM05D000790 ORTHO05D000769 8.3e-11 70.1 65 55.4
Duzib248G1363 Durio zibethinus HOM05D000790 ORTHO05D000769 1.1e-10 69.7 60 53.3
Gohir.D12G012700 Gossypium hirsutum HOM05D000790 ORTHO05D000769 1.4e-10 69.3 61 52.5
Gorai.008G012900 Gossypium raimondii HOM05D000790 ORTHO05D000769 1.4e-10 69.3 61 52.5
QL11p056935 Quercus lobata HOM05D000790 ORTHO05D000769 1.8e-10 68.9 74 44.6
Thecc.02G149000 Theobroma cacao HOM05D000790 ORTHO05D000769 1.8e-10 68.9 60 53.3
arahy.Tifrunner.gnm1.ann1.5CL3WB Arachis hypogaea HOM05D000790 ORTHO05D000769 2.4e-10 68.6 60 58.3
FvH4_2g17140 Fragaria vesca HOM05D000790 ORTHO05D000769 2.4e-10 68.6 71 46.5
FAN24G0258 Fragaria x ananassa HOM05D000790 ORTHO05D000769 2.4e-10 68.6 71 46.5
Prupe.8G182900 Prunus persica HOM05D000790 ORTHO05D000769 2.4e-10 68.6 73 47.9
CiPaw.05G095600 Carya illinoinensis HOM05D000790 ORTHO05D000769 3.1e-10 68.2 75 49.3
Psat7g205880 Pisum sativum HOM05D000790 ORTHO05D000769 3.1e-10 68.2 66 54.5
Potri.009G170201 Populus trichocarpa HOM05D000790 ORTHO05D000769 3.1e-10 68.2 61 54.1
CANSAT25G2677 Cannabis sativa HOM05D000790 ORTHO05D000769 4.1e-10 67.8 72 47.2
Ca_12486_v3 Cicer arietinum L. HOM05D000790 ORTHO05D000769 4.1e-10 67.8 62 56.5
MBI01_g31991_MAGBIO Magnolia biondii HOM05D000790 ORTHO05D000769 5.3e-10 67.4 57 54.4
MD10G1144600 Malus domestica HOM05D000790 ORTHO05D000769 5.3e-10 67.4 72 45.8
Medtr1g034390 Medicago truncatula HOM05D000790 ORTHO05D000769 7.0e-10 67.0 62 54.8
EL10Ac9g21567 Beta vulgaris HOM05D000790 ORTHO05D000769 9.1e-10 66.6 62 53.2
EL10Ac9g21776 Beta vulgaris HOM05D000790 ORTHO05D000769 9.1e-10 66.6 61 55.7
CANSAT25G0773 Cannabis sativa HOM05D000790 ORTHO05D000769 9.1e-10 66.6 72 45.8
MD05G1144800 Malus domestica HOM05D000790 ORTHO05D000769 9.1e-10 66.6 61 50.8
Psat6g097280 Pisum sativum HOM05D000790 ORTHO05D000769 9.1e-10 66.6 62 56.5
Lalb_Chr10g0095351 Lupinus albus HOM05D000790 ORTHO05D000769 1.2e-09 66.2 57 56.1
Potri.004G209200 Populus trichocarpa HOM05D000790 ORTHO05D000769 1.2e-09 66.2 61 52.5
Lj5P169T87 Lonicera japonica HOM05D000790 ORTHO05D000769 1.6e-09 65.9 64 53.1
ATR0605G171 Amborella trichopoda HOM05D000790 ORTHO05D000769 2.0e-09 65.5 60 48.3
Ah.01g019730 Amaranthus hybridus HOM05D000790 ORTHO05D000769 2.7e-09 65.1 74 48.6
PGR142G3601 Punica granatum HOM05D000790 ORTHO05D000769 3.5e-09 64.7 60 50.0
FAN27G1479 Fragaria x ananassa HOM05D000790 ORTHO05D000769 5.9e-09 63.9 51 54.9
TPR.G18589 Trifolium pratense HOM05D000790 ORTHO05D000769 1.0e-08 63.2 62 54.8
COL.COLO4_04810 Corchorus olitorius HOM05D000790 ORTHO05D000769 1.7e-08 62.4 60 50.0
AUR62011383 Chenopodium quinoa HOM05D000790 ORTHO05D000769 2.2e-08 62.0 82 48.8
Gohir.A12G012300 Gossypium hirsutum HOM05D000790 ORTHO05D000769 2.2e-08 62.0 60 48.3
unitig_0.g73 Utricularia gibba HOM05D000790 ORTHO05D000769 2.2e-08 62.0 61 47.5
Sabra04G0141100 Salix brachista HOM05D000790 ORTHO05D000769 2.9e-08 61.6 56 53.6
Sed0018258 Sechium edule HOM05D000790 ORTHO05D000769 2.9e-08 61.6 59 54.2
AUR62016676 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.8e-08 61.2 61 55.7
MELO3C015687.2 Cucumis melo HOM05D000790 ORTHO05D000769 3.8e-08 61.2 59 54.2
CsaV3_7G002220 Cucumis sativus L. HOM05D000790 ORTHO05D000769 6.5e-08 60.5 58 55.2
AUR62013211 Chenopodium quinoa HOM05D000790 ORTHO05D000769 8.5e-08 60.1 67 49.3
CSS0029274 Camellia sinensis var. sinensis HOM05D000790 ORTHO05D000769 1.1e-07 59.7 64 51.6
Glyma.07G161800 Glycine max HOM05D000790 ORTHO05D000769 2.5e-07 58.5 57 50.9
Aqoxy5G00944 Aquilegia oxysepala HOM05D000790 ORTHO05D000769 3.2e-07 58.2 70 41.4
VMungo1215G0576 Vigna mungo HOM05D000790 ORTHO05D000769 3.2e-07 58.2 46 63.0
unitig_60.g25448 Utricularia gibba HOM05D000790 ORTHO05D000769 4.2e-07 57.8 64 48.4
Duzib052G0073 Durio zibethinus HOM05D000790 ORTHO05D000769 5.5e-07 57.4 60 48.3
MBI04_g22020_MAGBIO Magnolia biondii HOM05D000790 ORTHO05D000769 5.5e-07 57.4 59 45.8
Phvul.003G010500 Phaseolus vulgaris HOM05D000790 ORTHO05D000769 5.5e-07 57.4 46 63.0
AUR62010215 Chenopodium quinoa HOM05D000790 ORTHO05D000769 7.2e-07 57.0 64 46.9
RcHm_v2.0_Chr6g0271941 Rosa chinensis HOM05D000790 ORTHO05D000769 1.6e-06 55.8 55 49.1
Sed0018399 Sechium edule HOM05D000790 ORTHO05D000769 1.6e-06 55.8 70 41.4
TAR381G1025 Trochodendron aralioides HOM05D000790 ORTHO05D000769 1.6e-06 55.8 61 45.9
TAR381G1234 Trochodendron aralioides HOM05D000790 ORTHO05D000769 1.6e-06 55.8 61 45.9
CsaV3_6G009970 Cucumis sativus L. HOM05D000790 ORTHO05D000769 2.1e-06 55.5 71 42.3
ClCG02G010740 Citrullus lanatus HOM05D000790 ORTHO05D000769 2.7e-06 55.1 71 40.8
MELO3C013478.2 Cucumis melo HOM05D000790 ORTHO05D000769 3.6e-06 54.7 71 42.3
arahy.Tifrunner.gnm1.ann1.338KFG Arachis hypogaea HOM05D000790 ORTHO05D000769 4.7e-06 54.3 53 52.8
PGR031G1828 Punica granatum HOM05D000790 ORTHO05D000769 4.7e-06 54.3 62 51.6


User provided reference genes

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