Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 1.9e-34 149.1 102 100.0
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 7.5e-23 110.5 72 86.1
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 2.3e-19 99.0 74 75.7
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 1.5e-18 96.3 74 68.9
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 1.9e-18 95.9 72 72.2
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 7.3e-18 94.0 72 70.8
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 1.6e-17 92.8 69 71.0
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 2.8e-17 92.0 69 71.0
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 8.0e-17 90.5 72 69.4
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 2.3e-16 89.0 68 67.6
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 3.0e-16 88.6 68 67.6
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 3.0e-16 88.6 66 68.2
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 3.0e-16 88.6 72 66.7
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 4.0e-16 88.2 69 65.2
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 6.8e-16 87.4 67 65.7
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 1.5e-15 86.3 75 64.0
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 1.5e-15 86.3 69 66.7
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 2.0e-15 85.9 70 62.9
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 2.6e-15 85.5 69 68.1
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 2.6e-15 85.5 69 68.1
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 2.6e-15 85.5 68 66.2
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 3.4e-15 85.1 69 58.0
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 7.5e-15 84.0 72 62.5
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 1.7e-14 82.8 69 62.3
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 3.7e-14 81.6 73 56.2
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 3.7e-14 81.6 73 57.5
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 4.9e-14 81.3 68 66.2
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 1.1e-13 80.1 73 56.2
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 1.1e-13 80.1 70 58.6
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 1.4e-13 79.7 73 54.8
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 1.4e-13 79.7 73 54.8
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 1.4e-13 79.7 101 48.5
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 1.8e-13 79.3 73 56.2
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 1.8e-13 79.3 73 54.8
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.8e-13 79.3 67 59.7
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 1.8e-13 79.3 67 59.7
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 2.4e-13 79.0 73 54.8
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 3.2e-13 78.6 73 53.4
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 3.2e-13 78.6 65 63.1
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.2e-13 78.6 98 51.0
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.2e-13 78.6 98 51.0
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 4.1e-13 78.2 73 54.8
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 4.1e-13 78.2 73 56.2
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 7.0e-13 77.4 70 57.1
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 9.2e-13 77.0 67 62.7
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 1.2e-12 76.6 73 54.8
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 1.6e-12 76.3 62 61.3
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 1.6e-12 76.3 66 59.1
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.6e-12 76.3 66 63.6
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 2.0e-12 75.9 62 64.5
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 2.7e-12 75.5 70 54.3
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 3.5e-12 75.1 72 62.5
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 3.5e-12 75.1 65 58.5
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 3.5e-12 75.1 72 58.3
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 4.6e-12 74.7 68 58.8
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 6.0e-12 74.3 70 54.3
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 6.0e-12 74.3 69 55.1
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 7.8e-12 73.9 72 56.9
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 1.0e-11 73.6 73 54.8
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.3e-11 73.2 72 52.8
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 1.7e-11 72.8 69 53.6
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.3e-11 72.4 69 56.5
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 2.3e-11 72.4 71 53.5
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 3.0e-11 72.0 69 58.0
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 3.9e-11 71.6 70 51.4
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 5.0e-11 71.2 67 55.2
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 8.6e-11 70.5 70 51.4
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 1.5e-10 69.7 68 58.8
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 1.9e-10 69.3 67 55.2
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 3.3e-10 68.6 72 52.8
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 7.3e-10 67.4 66 59.1
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 1.2e-09 66.6 70 48.6
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 1.6e-09 66.2 69 53.6
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 3.6e-09 65.1 70 50.0
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 2.3e-08 62.4 69 46.4
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 2.3e-08 62.4 70 48.6
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 4.0e-08 61.6 69 50.7
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 6.8e-08 60.8 69 50.7
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 1.5e-07 59.7 105 39.0
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 1.5e-07 59.7 69 43.5
Os06g0651200 Oryza sativa ssp. japonica HOM05D007802 ORTHO05D009879 2.6e-07 58.9 67 49.3
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 9.8e-07 57.0 70 45.7
Zm00001eb388760 Zea mays HOM05D007802 ORTHO05D009879 9.8e-07 57.0 57 56.1
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 2.9e-06 55.5 70 45.7
EL10Ac1g00486 Beta vulgaris HOM05D007802 ORTHO05D009879 3.7e-06 55.1 38 73.7
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 6.4e-06 54.3 44 61.4


User provided reference genes

Program Settings