Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046123 Camellia sinensis var. sinensis HOM05D006395 ORTHO05D007894 4.2e-163 578.2 336 100.0
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 3.2e-86 322.8 235 72.3
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 3.6e-82 309.3 229 74.2
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 1.2e-80 304.3 227 72.2
Actinidia23216 Actinidia chinensis HOM05D006395 ORTHO05D007894 2.0e-80 303.5 232 72.8
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 2.9e-79 299.7 229 72.1
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 7.8e-77 291.6 240 63.3
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 4.0e-73 279.3 232 64.7
Duzib168G0704 Durio zibethinus HOM05D006395 ORTHO05D007894 8.9e-73 278.1 238 60.5
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 2.0e-72 276.9 235 63.8
MSTRG.21234 Avicennia marina HOM05D006395 ORTHO05D007894 1.4e-70 270.8 234 59.8
Hma1.2p1_0841F.1_g226810 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 2.4e-70 270.0 236 62.7
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 1.2e-69 267.7 229 63.3
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 7.8e-69 265.0 230 61.3
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 7.8e-69 265.0 226 61.9
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 1.3e-68 264.2 228 61.0
Potri.001G280500 Populus trichocarpa HOM05D006395 ORTHO05D007894 3.0e-68 263.1 239 56.9
Eucgr.B02227 Eucalyptus grandis HOM05D006395 ORTHO05D007894 8.7e-68 261.5 242 58.3
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 1.9e-67 260.4 223 63.2
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 1.9e-67 260.4 223 63.2
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 2.5e-67 260.0 238 60.5
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 2.5e-67 260.0 241 57.7
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 5.6e-67 258.8 234 59.4
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 1.3e-66 257.7 227 60.8
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 1.3e-66 257.7 241 58.1
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 6.2e-66 255.4 238 58.0
TWI31G1172 Tripterygium wilfordii HOM05D006395 ORTHO05D007894 8.1e-66 255.0 235 57.0
Thecc.09G354500 Theobroma cacao HOM05D006395 ORTHO05D007894 1.4e-65 254.2 233 56.7
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 2.4e-65 253.4 235 57.4
Prupe.6G052000 Prunus persica HOM05D006395 ORTHO05D007894 3.1e-65 253.1 240 56.7
Lj6g0016849 Lotus japonicus HOM05D006395 ORTHO05D007894 1.2e-64 251.1 235 54.9
FAN21G1642 Fragaria x ananassa HOM05D006395 ORTHO05D007894 2.0e-64 250.4 240 58.3
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 2.6e-64 250.0 237 56.5
PSO170G0213 Papaver somniferum HOM05D006395 ORTHO05D007894 2.2e-63 246.9 231 57.1
FvH4_3g39360 Fragaria vesca HOM05D006395 ORTHO05D007894 3.8e-63 246.1 239 57.3
FAN25G1635 Fragaria x ananassa HOM05D006395 ORTHO05D007894 3.8e-63 246.1 239 57.3
FAN11G3343 Fragaria x ananassa HOM05D006395 ORTHO05D007894 1.1e-62 244.6 239 56.9
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 1.9e-62 243.8 239 53.6
Cpa.g.sc2.390 Carica papaya HOM05D006395 ORTHO05D007894 4.2e-62 242.7 239 54.4
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 4.2e-62 242.7 229 55.0
Atru.chr3.4150 Acer truncatum HOM05D006395 ORTHO05D007894 7.1e-62 241.9 229 56.8
RcHm_v2.0_Chr5g0070801 Rosa chinensis HOM05D006395 ORTHO05D007894 7.1e-62 241.9 235 57.9
CDE12G0063 Ceratophyllum demersum HOM05D006395 ORTHO05D007894 2.7e-61 240.0 230 56.1
Phvul.006G072100 Phaseolus vulgaris HOM05D006395 ORTHO05D007894 1.0e-60 238.0 235 54.0
Glyma.18G059000 Glycine max HOM05D006395 ORTHO05D007894 1.7e-60 237.3 230 54.8
Psat5g157120 Pisum sativum HOM05D006395 ORTHO05D007894 1.7e-60 237.3 237 51.1
PSO017G1403 Papaver somniferum HOM05D006395 ORTHO05D007894 2.3e-60 236.9 234 54.7
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 3.9e-60 236.1 210 60.0
Lalb_Chr18g0051251 Lupinus albus HOM05D006395 ORTHO05D007894 3.9e-60 236.1 239 52.7
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 3.9e-60 236.1 215 60.0
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 1.5e-59 234.2 210 60.0
CiPaw.13G072800 Carya illinoinensis HOM05D006395 ORTHO05D007894 2.5e-59 233.4 226 55.3
Medtr3g465570 Medicago truncatula HOM05D006395 ORTHO05D007894 4.3e-59 232.6 236 51.7
BcaB06g28340 Brassica carinata HOM05D006395 ORTHO05D007894 9.6e-59 231.5 231 52.8
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 6.2e-58 228.8 233 54.1
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 6.2e-58 228.8 233 54.1
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 8.1e-58 228.4 225 55.1
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 1.8e-57 227.3 227 53.3
BcaC02g08052 Brassica carinata HOM05D006395 ORTHO05D007894 1.8e-57 227.3 228 54.4
BcaC02g08055 Brassica carinata HOM05D006395 ORTHO05D007894 1.8e-57 227.3 228 54.4
A04p22790 Brassica napus HOM05D006395 ORTHO05D007894 1.8e-57 227.3 228 54.4
C04p58990 Brassica napus HOM05D006395 ORTHO05D007894 1.8e-57 227.3 228 54.4
BraA04t17818Z Brassica rapa HOM05D006395 ORTHO05D007894 1.8e-57 227.3 228 53.9
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 2.4e-57 226.9 231 56.7
FAN16G1183 Fragaria x ananassa HOM05D006395 ORTHO05D007894 3.1e-57 226.5 240 54.6
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 4.0e-57 226.1 207 59.9
Sp4g12670 Schrenkiella parvula HOM05D006395 ORTHO05D007894 4.0e-57 226.1 230 53.5
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 5.3e-57 225.7 228 53.5
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 5.3e-57 225.7 228 53.9
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 1.2e-56 224.6 228 53.5
EL10Ac7g15889 Beta vulgaris HOM05D006395 ORTHO05D007894 2.0e-56 223.8 242 52.9
Aqoxy1G01323 Aquilegia oxysepala HOM05D006395 ORTHO05D007894 2.6e-56 223.4 211 58.3
HPP92_025106 Vanilla planifolia HOM05D006395 ORTHO05D007894 5.8e-56 222.2 240 51.2
Thhalv10016813m.g Eutrema salsugineum HOM05D006395 ORTHO05D007894 1.7e-55 220.7 227 52.4
BolC4t27411H Brassica oleracea HOM05D006395 ORTHO05D007894 4.9e-55 219.2 221 53.4
THA.LOC104800755 Tarenaya hassleriana HOM05D006395 ORTHO05D007894 8.4e-55 218.4 229 52.8
Migut.D00855 Erythranthe guttata HOM05D006395 ORTHO05D007894 2.4e-54 216.9 206 58.3
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 3.2e-54 216.5 214 52.3
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 1.6e-53 214.2 237 48.9
TPR.G32918 Trifolium pratense HOM05D006395 ORTHO05D007894 2.1e-53 213.8 217 53.5
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 1.8e-52 210.7 214 55.6
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 3.9e-52 209.5 232 47.8
Ciclev10028704m.g Citrus clementina HOM05D006395 ORTHO05D007894 1.5e-51 207.6 237 51.1
Aa31LG5G6570 Aethionema arabicum HOM05D006395 ORTHO05D007894 1.8e-49 200.7 208 53.4
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 3.1e-49 199.9 212 55.2
Lsat_1_v5_gn_8_111040 Lactuca sativa HOM05D006395 ORTHO05D007894 1.7e-47 194.1 187 57.2
arahy.Tifrunner.gnm1.ann1.775QX7 Arachis hypogaea HOM05D006395 ORTHO05D007894 1.1e-46 191.4 248 46.4
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 1.1e-46 191.4 186 54.8
arahy.Tifrunner.gnm1.ann1.P58CS4 Arachis hypogaea HOM05D006395 ORTHO05D007894 1.4e-46 191.0 248 46.0
MBI15_g36485_MAGBIO Magnolia biondii HOM05D006395 ORTHO05D007894 5.5e-46 189.1 249 46.2
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 9.3e-46 188.3 219 53.9
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 3.5e-45 186.4 190 52.1
ECA236G5129 Erigeron canadensis HOM05D006395 ORTHO05D007894 7.9e-45 185.3 226 50.4
AUR62036248 Chenopodium quinoa HOM05D006395 ORTHO05D007894 6.7e-44 182.2 242 43.8
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 1.6e-42 177.6 241 46.5
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 1.5e-40 171.0 237 42.6
AUR62009698 Chenopodium quinoa HOM05D006395 ORTHO05D007894 6.5e-39 165.6 231 42.4
HanXRQChr05g0130471 Helianthus annuus HOM05D006395 ORTHO05D007894 1.9e-38 164.1 228 43.9
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 3.2e-38 163.3 180 51.7
SEGI_13349 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 1.6e-37 161.0 192 46.9
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 1.1e-33 148.3 241 36.1
Pp3c8_15530 Physcomitrium patens HOM05D006395 ORTHO05D007894 5.0e-31 139.4 231 36.8
Hma1.2p1_0841F.1_g226820 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 6.5e-31 139.0 126 58.7
Glyma.11G166200 Glycine max HOM05D006395 ORTHO05D007894 1.1e-30 138.3 157 48.4
Os10g0456200 Oryza sativa ssp. japonica HOM05D006395 ORTHO05D007894 1.8e-28 131.0 135 54.8
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 1.5e-27 127.9 232 34.5
CAN.G241.12 Capsicum annuum HOM05D006395 ORTHO05D007894 1.9e-22 110.9 101 58.4
Duzib150G1550 Durio zibethinus HOM05D006395 ORTHO05D007894 4.2e-22 109.8 131 47.3
Nitab4.5_0000967g0090 Nicotiana tabacum HOM05D000734 ORTHO05D002223 1.2e-21 108.2 78 69.2
unitig_0.g1179 Utricularia gibba HOM05D006395 ORTHO05D007894 2.0e-19 100.9 228 34.2
Migut.D00856 Erythranthe guttata HOM05D006395 ORTHO05D007894 4.8e-18 96.3 77 61.0
Cre16.g684800 Chlamydomonas reinhardtii HOM05D006395 ORTHO05D007894 2.0e-16 90.9 288 27.8
MD11G1065800 Malus domestica HOM05D006395 ORTHO05D007894 2.3e-12 77.4 81 49.4
SEGI_33382 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 6.7e-12 75.9 73 50.7
CBR_g32352 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-10 71.6 116 31.0
Nitab4.5_0008731g0020 Nicotiana tabacum HOM05D000734 ORTHO05D002223 2.0e-08 64.3 47 63.8
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 3.5e-08 63.5 127 33.1
CSS0029786 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D002559 6.5e-07 59.3 150 34.0
RcHm_v2.0_Chr5g0070821 Rosa chinensis HOM05D006395 ORTHO05D007894 8.5e-07 58.9 53 58.5
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 1.1e-06 58.5 74 41.9
CAN.G137.49 Capsicum annuum HOM05D000101 ORTHO05D000089 1.9e-06 57.8 120 32.5
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 5.5e-06 56.2 76 36.8
Thecc.02G013700 Theobroma cacao HOM05D000101 ORTHO05D002559 5.5e-06 56.2 91 37.4
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 7.2e-06 55.8 82 35.4
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 9.4e-06 55.5 73 38.4
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 9.4e-06 55.5 79 35.4
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 9.4e-06 55.5 74 39.2


User provided reference genes

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