Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 9.4e-47 189.9 99 100.0
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 2.9e-19 98.6 86 62.8
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 1.5e-15 86.3 108 49.1
Rhsim13G0113700 Rhododendron simsii HOM05D004022 ORTHO05D004090 9.5e-15 83.6 89 57.3
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 9.5e-15 83.6 107 46.7
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 3.6e-14 81.6 86 53.5
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 6.2e-14 80.9 113 45.1
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 1.4e-13 79.7 119 47.1
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 1.8e-13 79.3 113 41.6
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 4.0e-13 78.2 112 46.4
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 4.0e-13 78.2 118 44.9
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.9e-13 77.0 118 41.5
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 2.6e-12 75.5 109 42.2
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.4e-12 75.1 107 43.0
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 7.5e-12 73.9 114 42.1
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 7.5e-12 73.9 118 39.8
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 7.5e-12 73.9 99 45.5
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 7.5e-12 73.9 118 39.8
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 9.9e-12 73.6 93 50.5
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.3e-11 73.2 87 52.9
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 2.2e-11 72.4 94 46.8
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.2e-11 72.4 99 44.4
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 2.9e-11 72.0 98 45.9
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 2.9e-11 72.0 102 45.1
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 1.1e-10 70.1 91 47.3
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 1.4e-10 69.7 87 50.6
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 1.9e-10 69.3 84 44.0
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 3.2e-10 68.6 91 47.3
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 4.1e-10 68.2 87 49.4
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 4.1e-10 68.2 88 47.7
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 5.4e-10 67.8 88 48.9
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 7.1e-10 67.4 95 44.2
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.2e-09 66.6 93 46.2
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.2e-09 66.6 91 47.3
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 1.6e-09 66.2 114 38.6
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 2.1e-09 65.9 94 44.7
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.7e-09 65.5 127 38.6
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 2.7e-09 65.5 84 47.6
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 3.5e-09 65.1 96 46.9
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 4.6e-09 64.7 99 46.5
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 4.6e-09 64.7 95 44.2
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 4.6e-09 64.7 94 43.6
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 6.0e-09 64.3 100 42.0
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 6.0e-09 64.3 85 51.8
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 7.8e-09 63.9 103 41.7
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 7.8e-09 63.9 86 46.5
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 7.8e-09 63.9 90 43.3
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 1.0e-08 63.5 100 43.0
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 1.0e-08 63.5 86 45.3
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 1.0e-08 63.5 89 46.1
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 1.0e-08 63.5 85 50.6
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 1.3e-08 63.2 100 41.0
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.3e-08 63.2 99 43.4
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.7e-08 62.8 102 46.1
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 1.7e-08 62.8 100 43.0
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 1.7e-08 62.8 100 43.0
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.7e-08 62.8 84 51.2
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 1.7e-08 62.8 113 42.5
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.7e-08 62.8 103 42.7
CsaV3_6G051770 Cucumis sativus L. HOM05D024889 ORTHO05D004090 1.7e-08 62.8 102 38.2
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 2.3e-08 62.4 85 43.5
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 2.3e-08 62.4 82 47.6
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 3.0e-08 62.0 93 41.9
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.9e-08 61.6 102 41.2
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 3.9e-08 61.6 85 44.7
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 3.9e-08 61.6 102 43.1
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 6.6e-08 60.8 100 41.0
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 6.6e-08 60.8 93 40.9
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.6e-08 60.8 100 42.0
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 6.6e-08 60.8 100 42.0
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.6e-08 60.8 107 39.3
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 6.6e-08 60.8 105 42.9
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 6.6e-08 60.8 84 46.4
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 8.6e-08 60.5 89 47.2
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 8.6e-08 60.5 89 47.2
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 8.6e-08 60.5 89 47.2
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 1.1e-07 60.1 102 38.2
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-07 60.1 93 44.1
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-07 60.1 94 43.6
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 1.1e-07 60.1 93 44.1
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.1e-07 60.1 105 43.8
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 1.5e-07 59.7 106 42.5
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 1.9e-07 59.3 93 43.0
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 1.9e-07 59.3 96 43.8
MELO3C007129.2 Cucumis melo HOM05D024889 ORTHO05D004090 1.9e-07 59.3 94 43.6
PGR083G2833 Punica granatum HOM05D004022 ORTHO05D336655 1.9e-07 59.3 73 49.3
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.9e-07 59.3 94 42.6
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.5e-07 58.9 92 41.3
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 3.3e-07 58.5 100 41.0
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 3.3e-07 58.5 100 40.0
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 3.3e-07 58.5 96 41.7
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 3.3e-07 58.5 89 44.9
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 3.3e-07 58.5 87 46.0
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 3.3e-07 58.5 87 46.0
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 3.3e-07 58.5 98 39.8
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 4.3e-07 58.2 90 43.3
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 4.3e-07 58.2 90 43.3
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 4.3e-07 58.2 83 44.6
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 4.3e-07 58.2 86 43.0
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 5.6e-07 57.8 90 42.2
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 5.6e-07 57.8 90 42.2
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 5.6e-07 57.8 90 47.8
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 5.6e-07 57.8 100 40.0
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 7.3e-07 57.4 128 34.4
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.3e-07 57.4 89 42.7
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 7.3e-07 57.4 103 39.8
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 9.5e-07 57.0 100 40.0
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 1.2e-06 56.6 113 36.3
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.2e-06 56.6 83 43.4
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 1.6e-06 56.2 60 50.0
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.6e-06 56.2 99 42.4
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.6e-06 56.2 83 45.8
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 2.1e-06 55.8 98 39.8
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 2.1e-06 55.8 93 44.1
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 2.1e-06 55.8 101 36.6
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 2.1e-06 55.8 52 55.8
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.8e-06 55.5 98 37.8
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 2.8e-06 55.5 90 41.1
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 2.8e-06 55.5 95 40.0
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 3.6e-06 55.1 88 42.0
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 3.6e-06 55.1 96 39.6
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 3.6e-06 55.1 89 42.7
Lj4g0014771 Lotus japonicus HOM05D012904 ORTHO05D004090 3.6e-06 55.1 102 41.2
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 3.6e-06 55.1 83 43.4
Sed0018028 Sechium edule HOM05D024889 ORTHO05D004090 3.6e-06 55.1 102 43.1
Actinidia33696 Actinidia chinensis HOM05D004022 ORTHO05D004090 4.7e-06 54.7 38 76.3
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 4.7e-06 54.7 98 38.8
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 4.7e-06 54.7 95 40.0
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 4.7e-06 54.7 90 43.3
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 4.7e-06 54.7 95 40.0
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 4.7e-06 54.7 90 40.0
Nn3g20788 Nelumbo nucifera HOM05D004022 ORTHO05D004090 6.2e-06 54.3 87 44.8
arahy.Tifrunner.gnm1.ann1.SH745U Arachis hypogaea HOM05D012904 ORTHO05D004090 8.1e-06 53.9 108 36.1
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 8.1e-06 53.9 113 37.2
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 8.1e-06 53.9 109 35.8
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 8.1e-06 53.9 68 45.6


User provided reference genes

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