Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.6e-225 785.8 398 100.0
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.6e-225 785.8 398 100.0
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 6.2e-198 694.1 398 87.4
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 7.6e-196 687.2 398 87.4
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 3.0e-192 675.2 398 85.7
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 3.3e-191 671.8 398 85.4
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 9.0e-189 663.7 399 83.7
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 1.5e-188 662.9 387 87.9
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 1.5e-188 662.9 399 83.7
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.1e-183 646.7 396 82.3
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 1.9e-183 646.0 398 81.4
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 9.6e-183 643.7 397 81.1
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 1.6e-182 642.9 398 80.4
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 6.2e-182 641.0 398 80.2
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 1.1e-181 640.2 398 80.2
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.4e-181 639.0 398 81.9
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 3.1e-181 638.6 419 78.8
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.6e-180 635.6 398 81.7
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 4.5e-180 634.8 396 79.8
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 4.2e-178 628.2 399 80.2
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 9.3e-178 627.1 408 78.7
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 9.3e-178 627.1 396 79.5
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 3.5e-177 625.2 398 80.4
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 6.0e-177 624.4 398 80.7
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 3.0e-176 622.1 398 78.4
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 5.1e-176 621.3 398 80.7
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 8.7e-176 620.5 401 80.0
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 1.1e-175 620.2 398 78.9
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.5e-175 619.8 398 79.6
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 4.3e-175 618.2 400 79.8
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 4.3e-175 618.2 401 79.3
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 9.6e-175 617.1 398 79.4
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 9.6e-175 617.1 399 79.2
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 3.7e-174 615.1 400 78.8
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 8.1e-174 614.0 398 78.9
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.4e-173 613.2 398 78.4
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.8e-173 612.8 398 79.1
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 5.3e-173 611.3 398 78.6
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.3e-173 611.3 398 78.6
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 5.3e-173 611.3 399 78.9
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 6.9e-173 610.9 398 77.9
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.5e-172 609.8 398 77.6
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 1.5e-172 609.8 402 75.9
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.4e-172 608.6 398 77.9
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 1.3e-171 606.7 398 77.1
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 1.3e-171 606.7 399 78.4
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.7e-171 606.3 403 76.9
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.7e-171 606.3 383 80.2
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.1e-170 603.6 403 76.9
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.1e-170 603.6 405 78.0
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 1.1e-170 603.6 401 76.3
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.9e-170 602.8 398 76.9
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 4.2e-170 601.7 398 77.1
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 5.5e-170 601.3 405 78.3
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 3.0e-168 595.5 402 74.9
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 3.9e-168 595.1 398 76.9
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 6.7e-168 594.3 399 75.9
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 1.1e-167 593.6 406 74.4
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.9e-167 592.8 408 75.0
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 2.8e-166 589.0 406 73.9
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 3.7e-166 588.6 340 85.9
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 6.9e-165 584.3 399 74.9
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 7.6e-164 580.9 402 74.4
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.7e-163 579.7 404 74.0
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 2.2e-163 579.3 406 74.1
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 2.9e-163 578.9 398 74.9
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 4.9e-163 578.2 401 75.1
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 6.5e-163 577.8 399 74.2
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.1e-162 577.0 398 74.4
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.4e-162 576.6 405 75.1
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 1.9e-162 576.2 399 74.7
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 2.5e-162 575.9 404 73.5
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 5.5e-162 574.7 398 74.4
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 6.1e-161 571.2 402 73.9
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 3.9e-160 568.5 362 78.7
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 1.3e-158 563.5 362 77.1
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 1.6e-158 563.1 407 70.3
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 2.2e-158 562.8 405 71.6
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 3.7e-158 562.0 408 71.3
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 8.2e-158 560.8 408 70.3
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 1.1e-157 560.5 409 71.1
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 1.1e-157 560.5 409 70.9
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 2.4e-157 559.3 364 77.5
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 5.3e-157 558.1 509 61.9
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 6.9e-157 557.8 408 70.8
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 2.6e-156 555.8 409 70.2
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 5.9e-156 554.7 406 69.5
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 5.9e-156 554.7 412 70.1
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 7.7e-156 554.3 409 69.9
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 2.2e-155 552.7 401 72.8
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.7e-153 545.8 398 69.8
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 6.1e-153 544.7 428 66.4
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 2.8e-150 535.8 367 75.7
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 2.8e-150 535.8 402 70.9
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 3.4e-148 528.9 403 70.5
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 1.8e-144 516.5 404 67.6
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 5.1e-144 515.0 399 66.2
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 7.0e-141 504.6 404 66.8
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 1.1e-135 487.3 398 63.3
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 2.0e-135 486.5 345 68.4
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 2.6e-135 486.1 283 83.0
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 5.5e-130 468.4 452 58.6
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 1.8e-128 463.4 372 64.8
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 4.9e-110 402.1 339 58.4
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 9.6e-82 308.1 348 54.0
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 4.4e-79 299.3 267 62.2
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 9.9e-79 298.1 245 66.1
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.1e-72 278.1 160 83.1
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 9.9e-71 271.6 191 69.6
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.4e-69 266.9 214 66.4
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 2.5e-66 256.9 203 60.1
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 1.3e-65 254.6 227 63.0
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 8.4e-62 241.9 323 47.4
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 3.2e-61 240.0 260 54.6
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 8.4e-54 215.3 173 70.5
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.1e-50 204.9 205 55.6
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 1.2e-44 184.9 110 79.1
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 1.0e-43 181.8 110 80.0
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.9e-42 177.6 142 65.5
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 7.4e-42 175.6 369 35.5
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.3e-41 174.9 110 76.4
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 3.1e-40 170.2 100 81.0
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.0e-38 165.2 145 64.1
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 2.9e-38 163.7 349 32.7
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 4.2e-37 159.8 287 34.8
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 4.8e-33 146.4 285 32.3
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.5e-31 141.4 166 50.0
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.5e-31 141.4 166 50.0
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 3.5e-23 113.6 257 30.4
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 4.2e-21 106.7 78 69.2
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 5.5e-21 106.3 62 83.9
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 4.7e-20 103.2 83 66.3
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 8.0e-20 102.4 207 31.4
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 3.3e-18 97.1 68 70.6
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 6.3e-17 92.8 129 42.6
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.1e-16 92.0 49 85.7
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 1.4e-16 91.7 51 80.4
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.8e-16 91.3 60 73.3
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 7.0e-16 89.4 51 86.3
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 9.1e-16 89.0 50 88.0
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 1.2e-15 88.6 80 62.5
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 1.2e-15 88.6 80 62.5
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.2e-15 88.6 69 63.8
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 1.3e-14 85.1 194 30.9
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 8.5e-14 82.4 62 62.9
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 1.9e-13 81.3 85 52.9
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.9e-13 81.3 53 73.6
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 2.5e-13 80.9 55 70.9
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 5.5e-13 79.7 52 73.1
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.4e-11 75.1 90 45.6
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 4.0e-11 73.6 48 72.9
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 4.0e-11 73.6 48 72.9
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 1.5e-10 71.6 40 90.0
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 9.8e-10 68.9 40 85.0
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 1.3e-06 58.5 78 47.4
MCO07G268 Micromonas commoda HOM05D019552 ORTHO05D021310 8.5e-06 55.8 133 25.6


User provided reference genes

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