Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.9e-105 384.8 195 100.0
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 2.8e-103 378.6 195 97.4
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 6.3e-103 377.5 195 97.4
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 6.3e-103 377.5 195 96.4
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 8.2e-103 377.1 195 96.4
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 8.2e-103 377.1 195 96.9
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 1.1e-102 376.7 195 96.9
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 1.1e-102 376.7 195 96.9
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 2.4e-102 375.6 195 96.4
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 2.4e-102 375.6 195 96.4
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 3.1e-102 375.2 195 96.4
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 3.1e-102 375.2 195 96.4
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 3.1e-102 375.2 195 96.4
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 4.1e-102 374.8 193 96.9
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 4.1e-102 374.8 195 95.9
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 5.3e-102 374.4 195 95.4
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 5.3e-102 374.4 195 95.9
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 6.9e-102 374.0 195 95.9
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 6.9e-102 374.0 195 95.9
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 9.1e-102 373.6 195 95.9
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 9.1e-102 373.6 195 95.4
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 9.1e-102 373.6 195 96.4
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 1.2e-101 373.2 195 95.4
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 1.5e-101 372.9 195 95.4
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 2.0e-101 372.5 195 95.4
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 2.6e-101 372.1 195 95.4
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 3.4e-101 371.7 195 95.4
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 3.4e-101 371.7 195 95.9
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 3.4e-101 371.7 195 95.4
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 4.5e-101 371.3 195 94.9
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 4.5e-101 371.3 195 95.4
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 5.9e-101 370.9 195 95.4
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 7.7e-101 370.5 195 94.9
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 7.7e-101 370.5 195 94.9
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 94.9
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 94.4
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 1.3e-100 369.8 195 94.9
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.7e-100 369.4 189 97.9
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 94.9
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 94.9
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 92.8
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.9e-100 368.6 195 94.4
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 2.9e-100 368.6 195 94.9
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.9e-100 368.6 195 94.4
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 2.9e-100 368.6 195 93.3
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 3.8e-100 368.2 195 94.4
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 3.8e-100 368.2 195 93.8
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 3.8e-100 368.2 195 94.9
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.8e-100 368.2 195 94.4
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 93.8
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 94.4
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 94.4
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 6.5e-100 367.5 195 93.3
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 8.5e-100 367.1 195 93.8
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.1e-99 366.7 189 96.8
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 1.1e-99 366.7 195 92.8
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 93.8
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 93.3
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 2.5e-99 365.5 195 92.8
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 3.2e-99 365.2 193 93.8
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 3.2e-99 365.2 193 93.8
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 3.2e-99 365.2 193 93.8
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 3.2e-99 365.2 199 93.0
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.2e-99 364.8 195 93.3
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.2e-99 364.8 195 93.8
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.2e-99 364.8 195 93.3
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 5.5e-99 364.4 193 93.3
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 7.2e-99 364.0 193 93.3
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 7.2e-99 364.0 193 93.3
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 7.2e-99 364.0 193 93.3
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 9.4e-99 363.6 193 93.8
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 91.8
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 91.3
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 1.2e-98 363.2 193 92.7
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 1.6e-98 362.8 187 96.8
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 2.1e-98 362.5 195 92.3
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 2.1e-98 362.5 195 92.8
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 2.1e-98 362.5 195 92.8
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 3.6e-98 361.7 193 93.3
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 7.9e-98 360.5 187 95.2
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 7.9e-98 360.5 195 92.3
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 1.0e-97 360.1 186 96.2
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 1.4e-97 359.8 196 91.8
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 2.3e-97 359.0 185 96.2
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 3.0e-97 358.6 189 94.7
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 3.0e-97 358.6 185 96.2
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 3.0e-97 358.6 195 91.3
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 8.8e-97 357.1 185 95.7
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 1.1e-96 356.7 188 93.6
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.5e-96 356.3 185 94.6
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 2.0e-96 355.9 185 95.7
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 2.0e-96 355.9 186 94.6
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 4.4e-96 354.8 186 94.1
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 4.4e-96 354.8 195 89.7
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 9.7e-96 353.6 187 93.6
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 1.3e-95 353.2 185 94.1
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 1.3e-95 353.2 185 94.1
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 1.3e-95 353.2 185 94.1
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 1.3e-95 353.2 186 94.1
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 2.2e-95 352.4 186 93.0
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 3.7e-95 351.7 185 94.1
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 3.7e-95 351.7 185 94.1
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 6.3e-95 350.9 186 93.0
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 4.1e-94 348.2 218 82.6
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 2.0e-93 345.9 195 90.3
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 4.5e-93 344.7 195 86.7
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 3.8e-92 341.7 216 81.5
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 5.0e-92 341.3 195 88.7
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 6.5e-92 340.9 195 86.7
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 8.5e-92 340.5 226 78.8
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 2.1e-90 335.9 195 87.2
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 3.7e-87 325.1 195 85.1
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 6.3e-87 324.3 176 92.0
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 8.2e-87 323.9 194 79.9
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 8.2e-87 323.9 195 80.0
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 2.1e-82 309.3 195 83.6
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 1.4e-81 306.6 195 82.1
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.8e-81 306.2 195 82.1
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 4.0e-81 305.1 194 82.0
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 1.7e-79 299.7 195 80.5
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.0e-77 292.7 186 81.7
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.0e-77 292.7 186 81.7
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.3e-76 290.0 186 81.2
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 2.9e-76 288.9 150 97.3
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 8.6e-76 287.3 166 86.7
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 5.2e-73 278.1 195 73.3
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 6.6e-68 261.2 134 95.5
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 8.3e-63 244.2 181 66.3
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 1.1e-62 243.8 142 83.8
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 5.0e-60 235.0 124 94.4
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.9e-59 233.0 180 69.4
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.2e-55 219.5 128 89.1
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 2.9e-55 219.2 148 78.4
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.4e-54 216.1 123 87.8
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 2.0e-48 196.4 186 60.8
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 1.7e-47 193.4 188 52.7
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 2.3e-44 183.0 93 97.8
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 5.1e-44 181.8 173 53.8
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 7.6e-40 167.9 83 98.8
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.8e-39 165.6 123 72.4
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 8.6e-36 154.5 75 100.0
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.5e-35 152.9 75 98.7
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.4e-33 147.1 79 93.7
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 5.1e-28 128.6 70 92.9
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.1e-27 127.5 70 91.4
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 2.7e-21 106.3 58 86.2
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 4.6e-21 105.5 54 98.1
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 4.3e-19 99.0 109 54.1
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 2.1e-18 96.7 109 53.2
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.3e-15 87.4 47 89.4
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.1e-14 84.3 104 50.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.4e-14 84.0 42 95.2
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 4.2e-14 82.4 52 73.1
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 9.3e-14 81.3 90 53.3
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 2.3e-12 76.6 41 92.7
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.0e-12 76.3 57 68.4
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 1.1e-11 74.3 46 82.6
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 1.3e-10 70.9 42 81.0
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 1.3e-10 70.9 42 81.0
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 8.4e-07 58.2 39 74.4
MELO3C033919.2 Cucumis melo HOM05D004575 ORTHO05D168156 9.3e-06 54.7 69 43.5


User provided reference genes

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