Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046068 Camellia sinensis var. sinensis HOM05D007719 ORTHO05D009782 1.2e-236 822.8 420 100.0
Dinv05161 Davidia involucrata HOM05D007719 ORTHO05D009782 1.6e-196 689.5 418 83.0
Actinidia36679 Actinidia chinensis HOM05D007719 ORTHO05D009782 1.5e-189 666.4 419 80.9
vmacro10633 Vaccinium macrocarpon HOM05D007719 ORTHO05D009782 2.8e-188 662.1 418 81.1
Rhsim09G0099000 Rhododendron simsii HOM05D007719 ORTHO05D009782 1.7e-185 652.9 415 81.0
TAR629G1042 Trochodendron aralioides HOM05D007719 ORTHO05D009782 5.2e-179 631.3 408 78.2
QL01p001957 Quercus lobata HOM05D007719 ORTHO05D009782 6.4e-177 624.4 400 77.8
Potri.010G114100 Populus trichocarpa HOM05D007719 ORTHO05D009782 1.6e-175 619.8 394 78.4
Lalb_Chr17g0338681 Lupinus albus HOM05D007719 ORTHO05D009782 2.7e-175 619.0 378 80.4
ECA234G0976 Erigeron canadensis HOM05D007719 ORTHO05D009782 4.6e-175 618.2 387 78.8
Gorai.008G166400 Gossypium raimondii HOM05D007719 ORTHO05D009782 2.3e-174 615.9 410 75.1
CiPaw.05G248600 Carya illinoinensis HOM05D007719 ORTHO05D009782 3.0e-174 615.5 404 77.0
Atru.chr11.428 Acer truncatum HOM05D007719 ORTHO05D009782 6.6e-174 614.4 405 76.0
Gohir.A12G150300 Gossypium hirsutum HOM05D007719 ORTHO05D009782 6.6e-174 614.4 410 75.4
FAN12G3181 Fragaria x ananassa HOM05D007719 ORTHO05D009782 2.1e-172 609.4 407 74.2
Psat0s3407g0080 Pisum sativum HOM05D007719 ORTHO05D009782 3.6e-172 608.6 401 74.6
FAN22G2057 Fragaria x ananassa HOM05D007719 ORTHO05D009782 1.4e-171 606.7 407 73.7
Lsat_1_v5_gn_4_14941 Lactuca sativa HOM05D007719 ORTHO05D009782 1.4e-171 606.7 408 75.2
FvH4_4g32280 Fragaria vesca HOM05D007719 ORTHO05D009782 2.3e-171 605.9 401 74.6
HanXRQChr17g0566951 Helianthus annuus HOM05D007719 ORTHO05D009782 3.1e-171 605.5 417 73.4
FAN07G1524 Fragaria x ananassa HOM05D007719 ORTHO05D009782 4.0e-171 605.1 367 80.1
ClCG01G006100 Citrullus lanatus HOM05D007719 ORTHO05D009782 2.6e-170 602.4 408 74.3
VMungo1215G2618 Vigna mungo HOM05D007719 ORTHO05D009782 7.5e-170 600.9 377 78.2
Glyma.09G119300 Glycine max HOM05D007719 ORTHO05D009782 1.3e-169 600.1 417 74.1
TPR.G36961 Trifolium pratense HOM05D007719 ORTHO05D009782 3.7e-169 598.6 377 78.0
Medtr1g030640 Medicago truncatula HOM05D007719 ORTHO05D009782 6.4e-169 597.8 380 76.6
Hund24987 Selenicereus undatus HOM05D007719 ORTHO05D009782 6.4e-169 597.8 417 72.7
RcHm_v2.0_Chr4g0441071 Rosa chinensis HOM05D007719 ORTHO05D009782 8.3e-169 597.4 407 72.7
COL.COLO4_20469 Corchorus olitorius HOM05D007719 ORTHO05D009782 3.2e-168 595.5 434 70.7
MD16G1029600 Malus domestica HOM05D007719 ORTHO05D009782 3.2e-168 595.5 377 78.8
Phvul.003G022800 Phaseolus vulgaris HOM05D007719 ORTHO05D009782 3.2e-168 595.5 376 78.2
TWI75G0056 Tripterygium wilfordii HOM05D007719 ORTHO05D009782 4.1e-168 595.1 406 74.1
EL10Ac3g06304 Beta vulgaris HOM05D007719 ORTHO05D009782 7.0e-168 594.3 413 73.4
Sc11g0004120 Simmondsia chinensis HOM05D007719 ORTHO05D009782 9.2e-168 594.0 411 72.3
AUR62002606 Chenopodium quinoa HOM05D007719 ORTHO05D009782 2.0e-167 592.8 422 71.6
Ca_25710_v3 Cicer arietinum L. HOM05D007719 ORTHO05D009782 3.5e-167 592.0 402 74.1
CAN.G1334.8 Capsicum annuum HOM05D007719 ORTHO05D009782 6.0e-167 591.3 411 73.2
Sopen05g004110 Solanum pennellii HOM05D007719 ORTHO05D009782 6.0e-167 591.3 390 76.2
Cc11_g08840 Coffea canephora HOM05D007719 ORTHO05D009782 7.8e-167 590.9 411 73.7
Manes.15G114900 Manihot esculenta HOM05D007719 ORTHO05D009782 1.7e-166 589.7 359 79.7
AUR62030024 Chenopodium quinoa HOM05D007719 ORTHO05D009782 5.0e-166 588.2 414 71.7
Solyc05g008270.3 Solanum lycopersicum HOM05D007719 ORTHO05D009782 6.6e-166 587.8 390 75.6
Lj2g0007830 Lotus japonicus HOM05D007719 ORTHO05D009782 8.6e-166 587.4 368 78.0
PGR119G0428 Punica granatum HOM05D007719 ORTHO05D009782 8.6e-166 587.4 378 76.5
CsaV3_5G028560 Cucumis sativus L. HOM05D007719 ORTHO05D009782 1.1e-165 587.0 385 75.8
MSTRG.23215 Avicennia marina HOM05D007719 ORTHO05D009782 5.6e-165 584.7 399 74.4
Eucgr.G02196 Eucalyptus grandis HOM05D007719 ORTHO05D009782 5.6e-165 584.7 407 72.2
Oeu034423.3 Olea europaea HOM05D007719 ORTHO05D009782 1.2e-164 583.6 426 70.0
FAN17G2178 Fragaria x ananassa HOM05D007719 ORTHO05D009782 4.7e-164 581.6 360 78.6
Sed0008286 Sechium edule HOM05D007719 ORTHO05D009782 4.7e-164 581.6 410 72.2
Ah.07g204110 Amaranthus hybridus HOM05D007719 ORTHO05D009782 1.4e-163 580.1 399 72.9
DCAR_030215 Daucus carota HOM05D007719 ORTHO05D009782 3.1e-163 578.9 361 79.8
arahy.Tifrunner.gnm1.ann1.Y8VIVB Arachis hypogaea HOM05D007719 ORTHO05D009782 5.2e-163 578.2 370 75.7
PGSC0003DMG400030550 Solanum tuberosum HOM05D007719 ORTHO05D009782 1.3e-161 573.5 400 73.0
Sabra10G0084100 Salix brachista HOM05D007719 ORTHO05D009782 2.2e-161 572.8 408 71.1
ATR0686G226 Amborella trichopoda HOM05D007719 ORTHO05D009782 6.4e-161 571.2 387 72.1
SalBow5G1767 Salvia bowleyana HOM05D007719 ORTHO05D009782 6.4e-161 571.2 400 74.2
Nitab4.5_0004776g0060 Nicotiana tabacum HOM05D007719 ORTHO05D009782 6.0e-159 564.7 352 78.1
SGA_v2.0_scaffold25G10737 Striga asiatica HOM05D007719 ORTHO05D009782 2.3e-158 562.8 434 69.4
Migut.O00274 Erythranthe guttata HOM05D007719 ORTHO05D009782 1.8e-155 553.1 418 69.9
SEGI_18275 Sequoiadendron giganteum HOM05D007719 ORTHO05D009782 1.1e-152 543.9 391 68.8
Actinidia15254 Actinidia chinensis HOM05D007719 ORTHO05D009782 1.6e-151 540.0 412 70.4
arahy.Tifrunner.gnm1.ann1.L198GP Arachis hypogaea HOM05D007719 ORTHO05D009782 2.7e-151 539.3 370 72.7
Peaxi162Scf00205g00122 Petunia axillaris HOM05D007719 ORTHO05D009782 4.6e-151 538.5 389 71.7
Os01g0127400 Oryza sativa ssp. japonica HOM05D007719 ORTHO05D009782 1.3e-150 537.0 383 69.2
Prupe.1G323300 Prunus persica HOM05D007719 ORTHO05D009782 5.1e-150 535.0 367 74.9
HPP92_021852 Vanilla planifolia HOM05D007719 ORTHO05D009782 1.8e-147 526.6 371 69.0
unitig_61.g26194 Utricularia gibba HOM05D007719 ORTHO05D009782 4.0e-147 525.4 360 73.6
Mapoly0070s0076 Marchantia polymorpha HOM05D007719 ORTHO05D009782 7.3e-141 504.6 354 67.8
MELO3C005317.2 Cucumis melo HOM05D007719 ORTHO05D009782 4.5e-138 495.4 399 64.9
Pp3c1_3200 Physcomitrium patens HOM05D007719 ORTHO05D009782 7.6e-138 494.6 352 67.3
GSVIVG01011772001 Vitis vinifera HOM05D007719 ORTHO05D009782 5.1e-134 481.9 370 69.7
SMO236G0033 Selaginella moellendorffii HOM05D007719 ORTHO05D009782 7.4e-133 478.0 347 66.3
SMO236G0110 Selaginella moellendorffii HOM05D007719 ORTHO05D009782 7.4e-133 478.0 347 66.3
CDE04G3405 Ceratophyllum demersum HOM05D007719 ORTHO05D009782 1.1e-131 474.2 413 63.4
Zm00001eb125300 Zea mays HOM05D007719 ORTHO05D009782 1.7e-121 440.3 354 62.4
Thecc.02G280000 Theobroma cacao HOM05D007719 ORTHO05D009782 3.0e-110 402.9 245 78.8
Cpa.g.sc65.124 Carica papaya HOM05D007719 ORTHO05D009782 2.8e-108 396.4 276 72.8
Gohir.D12G153900 Gossypium hirsutum HOM05D007719 ORTHO05D009782 1.1e-107 394.4 275 72.4
SMO187G0003 Selaginella moellendorffii HOM05D007719 ORTHO05D009782 6.9e-107 391.7 347 57.3
Haze_11019 Corylus avellana HOM05D007719 ORTHO05D009782 3.8e-105 386.0 306 67.6
AagrBONN_evm.TU.Sc2ySwM_228.3777 Anthoceros agrestis HOM05D007719 ORTHO05D009782 5.5e-96 355.5 296 62.2
Cfa008596 Carpinus fangiana HOM05D007719 ORTHO05D009782 1.6e-90 337.4 248 69.8
SEGI_23314 Sequoiadendron giganteum HOM05D007719 ORTHO05D009782 1.4e-86 324.3 256 62.9
Nn4g24120 Nelumbo nucifera HOM05D007719 ORTHO05D009782 8.5e-81 305.1 174 84.5
CBR_g12440 Chara braunii HOM05D007719 ORTHO05D009782 3.0e-78 296.6 384 43.0
Duzib268G0649 Durio zibethinus HOM05D007719 ORTHO05D009782 3.7e-68 263.1 214 64.0
GSVIVG01011775001 Vitis vinifera HOM05D007719 ORTHO05D009782 6.1e-63 245.7 145 84.1
Cfa008597 Carpinus fangiana HOM05D007719 ORTHO05D009782 1.7e-52 211.1 135 76.3
Haze_11018 Corylus avellana HOM05D007719 ORTHO05D009782 6.4e-52 209.1 135 75.6
TPR.G29132 Trifolium pratense HOM05D007719 ORTHO05D009782 7.1e-11 72.8 77 54.5


User provided reference genes

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