Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046058 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.1e-90 336.7 170 100.0
CSS0043490 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 5.4e-50 201.4 125 81.6
CSS0008944 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 6.8e-37 157.9 135 62.2
CSS0037655 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 4.9e-35 151.8 135 60.7
CSS0020228 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 5.1e-32 141.7 124 64.5
Actinidia03928 Actinidia chinensis HOM05D002156 ORTHO05D002328 6.0e-25 118.2 133 50.4
vmacro07661 Vaccinium macrocarpon HOM05D002156 ORTHO05D002328 3.9e-24 115.5 122 52.5
Rhsim03G0050200 Rhododendron simsii HOM05D002156 ORTHO05D002328 2.5e-23 112.8 119 55.5
CSS0038488 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 4.3e-23 112.1 122 54.1
Hma1.2p1_1039F.1_g250900 Hydrangea macrophylla HOM05D002156 ORTHO05D002328 9.6e-23 110.9 140 46.4
ECA248G3031 Erigeron canadensis HOM05D002156 ORTHO05D002328 1.4e-21 107.1 134 44.0
Cpa.g.sc161.28 Carica papaya HOM05D002156 ORTHO05D002328 6.9e-21 104.8 138 41.3
COL.COLO4_28629 Corchorus olitorius HOM05D002156 ORTHO05D002328 6.9e-21 104.8 124 46.8
PGR042G0405 Punica granatum HOM05D002156 ORTHO05D002328 6.9e-21 104.8 120 44.2
TWI32G0999 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 8.9e-21 104.4 92 59.8
TWI34G0345 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 8.9e-21 104.4 82 61.0
Manes.08G153900 Manihot esculenta HOM05D002156 ORTHO05D002328 2.0e-20 103.2 122 45.1
Thecc.05G243200 Theobroma cacao HOM05D002156 ORTHO05D002328 2.6e-20 102.8 138 41.3
MD12G1009900 Malus domestica HOM05D002156 ORTHO05D002328 4.4e-20 102.1 122 46.7
TAR623G0551 Trochodendron aralioides HOM05D002156 ORTHO05D002328 4.4e-20 102.1 121 46.3
Cc06_g17240 Coffea canephora HOM05D002156 ORTHO05D002328 5.8e-20 101.7 137 42.3
MD12G1009700 Malus domestica HOM05D002156 ORTHO05D002328 7.6e-20 101.3 97 54.6
Potri.019G039300 Populus trichocarpa HOM05D002156 ORTHO05D002328 9.9e-20 100.9 134 41.8
GSVIVG01025814001 Vitis vinifera HOM05D002156 ORTHO05D002328 9.9e-20 100.9 136 43.4
DCAR_020655 Daucus carota HOM05D002156 ORTHO05D002328 1.3e-19 100.5 121 44.6
arahy.Tifrunner.gnm1.ann1.7VP81J Arachis hypogaea HOM05D002156 ORTHO05D002328 1.7e-19 100.1 136 40.4
arahy.Tifrunner.gnm1.ann1.M0VUV2 Arachis hypogaea HOM05D002156 ORTHO05D002328 1.7e-19 100.1 136 40.4
HanXRQChr11g0348131 Helianthus annuus HOM05D002156 ORTHO05D002328 2.2e-19 99.8 134 40.3
Duzib106G2010 Durio zibethinus HOM05D002156 ORTHO05D002328 2.9e-19 99.4 122 43.4
Lsat_1_v5_gn_1_55260 Lactuca sativa HOM05D002156 ORTHO05D002328 2.9e-19 99.4 138 40.6
Atru.chr2.1496 Acer truncatum HOM05D002156 ORTHO05D002328 4.9e-19 98.6 100 52.0
Haze_20432 Corylus avellana HOM05D002156 ORTHO05D002328 4.9e-19 98.6 124 44.4
CiPaw.09G168300 Carya illinoinensis HOM05D002156 ORTHO05D002328 6.4e-19 98.2 124 48.4
Prupe.7G011900 Prunus persica HOM05D002156 ORTHO05D002328 6.4e-19 98.2 122 45.1
Ciclev10019878m.g Citrus clementina HOM05D002156 ORTHO05D002328 8.4e-19 97.8 137 41.6
Cfa017704 Carpinus fangiana HOM05D002156 ORTHO05D002328 1.1e-18 97.4 124 45.2
CsaV3_4G011990 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.4e-18 97.1 123 43.9
PSO384G2429 Papaver somniferum HOM05D002156 ORTHO05D002328 1.4e-18 97.1 119 42.9
Lj1A1067G36 Lonicera japonica HOM05D002156 ORTHO05D002328 2.4e-18 96.3 175 38.3
Lalb_Chr14g0364791 Lupinus albus HOM05D002156 ORTHO05D002328 2.4e-18 96.3 83 51.8
Sabra13G0056700 Salix brachista HOM05D002156 ORTHO05D002328 3.2e-18 95.9 134 40.3
ClCG04G004550 Citrullus lanatus HOM05D002156 ORTHO05D002328 4.2e-18 95.5 123 43.9
Lj1g0011130 Lotus japonicus HOM05D002156 ORTHO05D002328 5.4e-18 95.1 83 51.8
Gohir.D11G241900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 7.1e-18 94.7 121 42.1
Gorai.007G256200 Gossypium raimondii HOM05D002156 ORTHO05D002328 7.1e-18 94.7 121 42.1
EL10Ac5g11718 Beta vulgaris HOM05D002156 ORTHO05D002328 9.3e-18 94.4 136 38.2
MELO3C008849.2 Cucumis melo HOM05D002156 ORTHO05D002328 9.3e-18 94.4 123 42.3
Eucgr.A02134 Eucalyptus grandis HOM05D002156 ORTHO05D002328 9.3e-18 94.4 120 43.3
Lsat_1_v5_gn_2_103620 Lactuca sativa HOM05D002156 ORTHO05D002328 9.3e-18 94.4 133 40.6
CSS0001756 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.2e-17 94.0 124 50.0
Gohir.D13G166800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.2e-17 94.0 124 41.9
QL07p017931 Quercus lobata HOM05D002156 ORTHO05D002328 1.2e-17 94.0 122 44.3
THA.LOC104800404 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.2e-17 94.0 136 40.4
CDE05G3656 Ceratophyllum demersum HOM05D002156 ORTHO05D002328 1.6e-17 93.6 120 43.3
THA.LOC104800077 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.6e-17 93.6 136 39.7
RcHm_v2.0_Chr3g0496221 Rosa chinensis HOM05D002156 ORTHO05D002328 2.1e-17 93.2 120 39.2
Sed0023631 Sechium edule HOM05D002156 ORTHO05D002328 2.1e-17 93.2 125 44.0
Duzib128G0733 Durio zibethinus HOM05D002156 ORTHO05D002328 3.5e-17 92.4 124 41.1
Nitab4.5_0001720g0020 Nicotiana tabacum HOM05D002156 ORTHO05D002328 3.5e-17 92.4 135 37.8
THA.LOC104821409 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 3.5e-17 92.4 173 37.0
Potri.013G064800 Populus trichocarpa HOM05D002156 ORTHO05D002328 4.6e-17 92.0 134 38.8
Ca_08306_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 6.0e-17 91.7 103 44.7
Gohir.A11G230100 Gossypium hirsutum HOM05D002156 ORTHO05D002328 6.0e-17 91.7 121 42.1
HanXRQChr01g0026721 Helianthus annuus HOM05D002156 ORTHO05D029280 6.0e-17 91.7 107 46.7
MD14G1007100 Malus domestica HOM05D002156 ORTHO05D002328 6.0e-17 91.7 155 40.6
Nn2g14545 Nelumbo nucifera HOM05D002156 ORTHO05D002328 6.0e-17 91.7 119 44.5
Psat3g087320 Pisum sativum HOM05D002156 ORTHO05D002328 6.0e-17 91.7 138 38.4
VMungo1383G3546 Vigna mungo HOM05D002156 ORTHO05D002328 6.0e-17 91.7 134 38.8
Glyma.19G116100 Glycine max HOM05D002156 ORTHO05D002328 7.8e-17 91.3 136 37.5
Gorai.013G195700 Gossypium raimondii HOM05D002156 ORTHO05D002328 7.8e-17 91.3 124 41.1
Peaxi162Scf01344g00018 Petunia axillaris HOM05D002156 ORTHO05D002328 7.8e-17 91.3 136 36.0
Gohir.A13G163900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.0e-16 90.9 113 44.2
Medtr7g086460 Medicago truncatula HOM05D002156 ORTHO05D002328 1.0e-16 90.9 124 41.9
Sed0005796 Sechium edule HOM05D002156 ORTHO05D002328 1.3e-16 90.5 123 40.7
Glyma.16G037000 Glycine max HOM05D002156 ORTHO05D002328 1.7e-16 90.1 116 43.1
SalBow1G7226 Salvia bowleyana HOM05D002156 ORTHO05D002328 2.3e-16 89.7 121 41.3
Hund22589 Selenicereus undatus HOM05D002156 ORTHO05D002328 2.3e-16 89.7 132 38.6
Sc07g0007830 Simmondsia chinensis HOM05D002156 ORTHO05D002328 2.3e-16 89.7 122 40.2
FvH4_1g28540 Fragaria vesca HOM05D002156 ORTHO05D002328 3.0e-16 89.4 134 35.8
Phvul.001G115500 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 3.0e-16 89.4 134 38.8
Sopen01g021430 Solanum pennellii HOM05D002156 ORTHO05D002328 3.9e-16 89.0 136 36.0
TPR.G17860 Trifolium pratense HOM05D002156 ORTHO05D002328 3.9e-16 89.0 66 57.6
FAN19G2483 Fragaria x ananassa HOM05D002156 ORTHO05D002328 5.1e-16 88.6 134 35.8
MD09G1231100 Malus domestica HOM05D002156 ORTHO05D002328 5.1e-16 88.6 167 38.3
Solyc01g057090.4 Solanum lycopersicum HOM05D002156 ORTHO05D002328 5.1e-16 88.6 136 36.0
BcaB03g15489 Brassica carinata HOM05D002156 ORTHO05D002328 6.6e-16 88.2 142 37.3
Aa31LG2G1840 Aethionema arabicum HOM05D002156 ORTHO05D002328 8.7e-16 87.8 177 36.7
AUR62036257 Chenopodium quinoa HOM05D002156 ORTHO05D002328 8.7e-16 87.8 133 38.3
Aqoxy1G00521 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 1.5e-15 87.0 121 42.1
Nitab4.5_0000098g0160 Nicotiana tabacum HOM05D002156 ORTHO05D002328 1.5e-15 87.0 135 35.6
HanXRQChr07g0197191 Helianthus annuus HOM05D002156 ORTHO05D002328 1.9e-15 86.7 90 47.8
FAN23G2882 Fragaria x ananassa HOM05D002156 ORTHO05D002328 2.5e-15 86.3 134 35.8
Thhalv10018456m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 3.3e-15 85.9 142 35.9
CAN.G752.1 Capsicum annuum HOM05D002156 ORTHO05D002328 4.3e-15 85.5 171 35.1
ECA232G4690 Erigeron canadensis HOM05D000927 ORTHO05D029280 4.3e-15 85.5 122 37.7
SGA_v2.0_scaffold17G07976 Striga asiatica HOM05D002156 ORTHO05D002328 4.3e-15 85.5 135 37.0
BolC6t38783H Brassica oleracea HOM05D002156 ORTHO05D002328 5.6e-15 85.1 134 38.8
PGSC0003DMG400013066 Solanum tuberosum HOM05D002156 ORTHO05D002328 5.6e-15 85.1 136 34.6
C06p36730 Brassica napus HOM05D002156 ORTHO05D002328 9.6e-15 84.3 142 36.6
ATR0618G027 Amborella trichopoda HOM05D002156 ORTHO05D002328 1.3e-14 84.0 138 34.8
BcaC08g45876 Brassica carinata HOM05D002156 ORTHO05D002328 1.6e-14 83.6 134 38.8
MSTRG.10750 Avicennia marina HOM05D002156 ORTHO05D002328 2.1e-14 83.2 135 37.8
Oeu032944.1 Olea europaea HOM05D002156 ORTHO05D002328 2.1e-14 83.2 140 38.6
AUR62038448 Chenopodium quinoa HOM05D002156 ORTHO05D002328 2.8e-14 82.8 135 36.3
A07p31440 Brassica napus HOM05D002156 ORTHO05D002328 4.8e-14 82.0 138 35.5
Sp5g24790 Schrenkiella parvula HOM05D002156 ORTHO05D002328 4.8e-14 82.0 142 35.2
Aqoxy2G00573 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 6.2e-14 81.6 121 40.5
BraA07t30779Z Brassica rapa HOM05D002156 ORTHO05D002328 6.2e-14 81.6 142 35.2
arahy.Tifrunner.gnm1.ann1.4I7PBY Arachis hypogaea HOM05D002156 ORTHO05D002328 1.1e-13 80.9 118 37.3
Oeu056497.3 Olea europaea HOM05D002156 ORTHO05D002328 1.1e-13 80.9 140 36.4
arahy.Tifrunner.gnm1.ann1.0R4MPN Arachis hypogaea HOM05D002156 ORTHO05D002328 2.4e-13 79.7 67 49.3
ECA232G3899 Erigeron canadensis HOM05D002156 ORTHO05D029280 2.4e-13 79.7 122 36.1
Migut.K00223 Erythranthe guttata HOM05D002156 ORTHO05D002328 3.1e-13 79.3 135 35.6
HPP92_012146 Vanilla planifolia HOM05D002156 ORTHO05D002328 5.3e-13 78.6 122 35.2
unitig_0.g2673 Utricularia gibba HOM05D002156 ORTHO05D002328 1.2e-12 77.4 133 33.8
AL1G42570 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 3.4e-12 75.9 76 47.4
Os03g0654500 Oryza sativa ssp. japonica HOM05D002156 ORTHO05D002328 3.4e-12 75.9 120 36.7
arahy.Tifrunner.gnm1.ann1.A9N3QV Arachis hypogaea HOM05D002156 ORTHO05D002328 4.5e-12 75.5 82 41.5
Carub.0001s2716 Capsella rubella HOM05D002156 ORTHO05D002328 7.6e-12 74.7 76 47.4
CARHR028160 Cardamine hirsuta HOM05D002156 ORTHO05D002328 8.4e-11 71.2 76 40.8
HanXRQChr01g0026731 Helianthus annuus HOM05D002156 ORTHO05D029280 1.4e-10 70.5 93 39.8
arahy.Tifrunner.gnm1.ann1.ZF4CS3 Arachis hypogaea HOM05D002156 ORTHO05D002328 3.2e-10 69.3 83 39.8
Zm00001eb052850 Zea mays HOM05D002156 ORTHO05D002328 3.2e-10 69.3 136 33.1
Atru.chr8.2310 Acer truncatum HOM05D002156 ORTHO05D002328 4.2e-10 68.9 71 52.1
AT1G28760 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 4.6e-09 65.5 143 34.3


User provided reference genes

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