Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.1e-113 413.3 206 100.0
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 3.8e-98 361.7 204 84.3
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 9.3e-97 357.1 204 85.3
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.2e-96 356.7 205 86.3
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 6.0e-96 354.4 206 88.8
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 6.0e-96 354.4 205 86.3
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.9e-95 351.7 204 83.3
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.3e-92 341.3 203 80.8
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.8e-87 326.2 204 78.9
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.9e-87 325.1 203 75.4
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 3.9e-87 325.1 205 75.6
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 8.7e-87 323.9 204 77.5
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.1e-86 323.6 203 75.4
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-86 323.6 203 75.4
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.1e-86 323.6 203 74.4
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.5e-86 323.2 203 75.9
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 5.6e-86 321.2 204 76.0
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.3e-85 320.1 204 76.5
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.3e-85 320.1 204 76.0
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 1.6e-85 319.7 204 76.0
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 2.1e-85 319.3 204 75.5
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.1e-85 319.3 203 74.4
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.8e-85 318.9 204 76.5
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 2.8e-85 318.9 203 75.4
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 3.7e-85 318.5 204 75.0
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 3.7e-85 318.5 202 74.8
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 3.7e-85 318.5 203 74.4
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.7e-85 318.5 204 75.0
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 4.8e-85 318.2 204 75.0
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.8e-85 318.2 205 78.0
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 8.2e-85 317.4 205 77.6
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 2.4e-84 315.8 204 75.0
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 5.3e-84 314.7 204 74.5
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 6.9e-84 314.3 203 75.9
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.9e-84 314.3 204 77.0
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 9.0e-84 313.9 206 75.7
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 9.0e-84 313.9 204 75.0
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.2e-83 313.5 205 76.6
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.5e-83 313.2 204 75.0
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.6e-83 312.4 204 77.5
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 3.4e-83 312.0 203 74.9
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.4e-83 312.0 206 74.8
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 4.5e-83 311.6 206 74.3
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.0e-82 310.5 205 75.1
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 1.7e-82 309.7 203 74.4
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 2.2e-82 309.3 204 72.5
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.9e-82 308.9 204 74.0
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 3.8e-82 308.5 204 74.0
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 3.8e-82 308.5 202 74.3
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 4.9e-82 308.1 206 75.2
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 4.9e-82 308.1 199 74.9
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 4.9e-82 308.1 205 76.1
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 6.5e-82 307.8 203 74.4
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.4e-81 306.6 227 68.7
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.4e-81 306.6 205 70.2
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 1.9e-81 306.2 203 72.4
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 2.5e-81 305.8 204 76.5
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 3.2e-81 305.4 204 73.0
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 5.5e-81 304.7 203 71.4
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 5.5e-81 304.7 203 71.4
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 7.1e-81 304.3 203 70.4
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 9.3e-81 303.9 205 69.8
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.6e-80 303.1 204 75.5
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 1.6e-80 303.1 201 74.6
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.6e-80 303.1 204 75.0
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.6e-80 303.1 204 76.0
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 2.1e-80 302.8 203 70.4
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 2.7e-80 302.4 201 73.1
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 3.5e-80 302.0 206 74.3
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 3.5e-80 302.0 203 72.4
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 4.6e-80 301.6 203 70.0
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 6.0e-80 301.2 198 75.3
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 7.9e-80 300.8 203 70.4
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 7.9e-80 300.8 205 73.7
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.0e-79 300.4 200 72.0
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 1.3e-79 300.1 202 70.8
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.8e-79 299.7 203 70.4
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.3e-79 299.3 203 70.4
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 2.3e-79 299.3 207 73.4
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 3.0e-79 298.9 203 70.4
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 3.0e-79 298.9 203 70.4
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 3.0e-79 298.9 203 70.0
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.9e-79 298.5 203 70.0
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 3.9e-79 298.5 205 70.7
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 8.7e-79 297.4 203 70.4
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 8.7e-79 297.4 203 68.5
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 8.7e-79 297.4 203 70.4
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 8.7e-79 297.4 203 70.4
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 8.7e-79 297.4 203 68.5
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 8.7e-79 297.4 203 73.9
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 1.1e-78 297.0 203 70.4
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.9e-78 296.2 201 71.6
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 3.3e-78 295.4 203 70.0
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 4.3e-78 295.0 203 70.0
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 9.7e-78 293.9 197 73.6
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 1.3e-77 293.5 203 69.5
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.3e-77 293.5 201 71.6
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.3e-77 293.5 201 70.6
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.6e-77 293.1 201 71.1
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 1.6e-77 293.1 202 70.8
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 2.1e-77 292.7 202 69.8
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 2.8e-77 292.4 194 73.7
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 3.7e-77 292.0 256 60.2
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 4.8e-77 291.6 203 69.5
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 4.8e-77 291.6 203 69.5
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 8.2e-77 290.8 202 70.8
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 2.4e-76 289.3 202 68.8
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 3.1e-76 288.9 202 68.3
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 4.1e-76 288.5 203 70.0
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.2e-75 287.0 213 65.3
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.5e-75 285.0 208 66.8
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 4.5e-75 285.0 202 68.8
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 7.6e-75 284.3 205 67.8
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.7e-74 283.1 204 69.1
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 3.7e-69 265.4 204 60.3
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 8.2e-69 264.2 194 67.0
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 2.0e-67 259.6 206 62.1
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 3.4e-67 258.8 209 60.3
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.3e-61 240.4 208 58.7
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.7e-61 238.8 145 82.1
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 5.3e-60 235.0 212 55.2
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.3e-58 230.3 209 56.9
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 2.2e-58 229.6 205 62.0
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.1e-57 227.3 208 55.3
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 8.8e-55 217.6 143 77.6
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.5e-54 216.9 141 75.2
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 6.3e-53 211.5 149 69.8
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.1e-52 210.7 147 70.7
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 9.4e-49 197.6 150 68.7
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 2.0e-46 189.9 205 47.8
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.1e-44 184.1 169 58.6
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.7e-43 179.5 129 69.0
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 5.2e-39 165.2 182 52.2
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.1e-28 131.0 199 37.2
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 3.5e-27 125.9 128 51.6
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 1.7e-26 123.6 196 40.3
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.6e-26 121.3 134 52.2
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 2.8e-24 116.3 201 37.8
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.7e-24 115.5 77 68.8
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.8e-23 113.6 100 59.0
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.7e-21 107.1 64 78.1
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.1e-20 104.4 71 74.6
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 9.2e-20 101.3 69 71.0
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 2.6e-14 83.2 64 64.1
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 4.4e-14 82.4 50 80.0
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.7e-10 70.5 51 66.7
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.7e-10 70.5 51 66.7
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 3.9e-10 69.3 46 69.6
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 6.6e-10 68.6 72 55.6
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.6e-10 68.6 67 50.7
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.1e-09 67.8 120 35.8
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 3.4e-06 56.2 82 34.1
Rhsim04G0170200 Rhododendron simsii HOM05D000866 ORTHO05D000673 9.9e-06 54.7 34 73.5


User provided reference genes

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