Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046000 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D004872 5.7e-62 240.7 122 100.0
CSS0007871 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 1.3e-10 70.1 44 77.3
CSS0013537 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 1.3e-10 70.1 44 77.3
RcHm_v2.0_Chr7g0193701 Rosa chinensis HOM05D004077 ORTHO05D004872 3.3e-09 65.5 39 82.1
FvH4_5g05210 Fragaria vesca HOM05D004077 ORTHO05D004872 4.3e-09 65.1 39 79.5
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 4.3e-09 65.1 39 79.5
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 4.3e-09 65.1 39 79.5
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 9.6e-09 63.9 39 76.9
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 9.6e-09 63.9 43 74.4
PGSC0003DMG402005674 Solanum tuberosum HOM05D006919 ORTHO05D008705 9.6e-09 63.9 43 72.1
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 1.3e-08 63.5 40 82.5
ECA233G0189 Erigeron canadensis HOM05D006919 ORTHO05D008705 1.3e-08 63.5 43 74.4
Manes.14G066700 Manihot esculenta HOM05D004077 ORTHO05D004872 1.3e-08 63.5 40 82.5
Nitab4.5_0012026g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 1.3e-08 63.5 43 72.1
Nitab4.5_0013135g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 1.3e-08 63.5 43 72.1
Actinidia18895 Actinidia chinensis HOM05D006919 ORTHO05D008705 1.6e-08 63.2 43 72.1
FAN13G2227 Fragaria x ananassa HOM05D004077 ORTHO05D004872 1.6e-08 63.2 39 76.9
COL.COLO4_04912 Corchorus olitorius HOM05D006919 ORTHO05D008705 2.1e-08 62.8 43 69.8
Dinv08205 Davidia involucrata HOM05D006919 ORTHO05D008705 2.1e-08 62.8 43 72.1
Duzib205G1348 Durio zibethinus HOM05D006919 ORTHO05D008705 2.1e-08 62.8 43 67.4
Hma1.2p1_0176F.1_g077530 Hydrangea macrophylla HOM05D004077 ORTHO05D004872 2.1e-08 62.8 47 68.1
Sabra12G0056900 Salix brachista HOM05D004077 ORTHO05D004872 2.1e-08 62.8 41 78.0
Aa31LG4G16630 Aethionema arabicum HOM05D004077 ORTHO05D004872 2.8e-08 62.4 39 74.4
Oeu024688.1 Olea europaea HOM05D004077 ORTHO05D004872 2.8e-08 62.4 40 80.0
Potri.012G079600 Populus trichocarpa HOM05D004077 ORTHO05D004872 2.8e-08 62.4 40 80.0
Potri.015G074900 Populus trichocarpa HOM05D004077 ORTHO05D004872 2.8e-08 62.4 40 80.0
TAR371G1277 Trochodendron aralioides HOM05D004077 ORTHO05D004872 3.7e-08 62.0 40 80.0
Cc04_g13750 Coffea canephora HOM05D004077 ORTHO05D004872 4.8e-08 61.6 40 80.0
DCAR_031316 Daucus carota HOM05D004077 ORTHO05D004872 4.8e-08 61.6 40 80.0
Dinv09148 Davidia involucrata HOM05D004077 ORTHO05D004872 4.8e-08 61.6 40 80.0
Peaxi162Scf00314g00331 Petunia axillaris HOM05D006919 ORTHO05D008705 4.8e-08 61.6 43 69.8
PGR083G2191 Punica granatum HOM05D004077 ORTHO05D004872 4.8e-08 61.6 40 80.0
Solyc03g118660.3 Solanum lycopersicum HOM05D006919 ORTHO05D008705 4.8e-08 61.6 43 69.8
Sopen03g037620 Solanum pennellii HOM05D006919 ORTHO05D008705 4.8e-08 61.6 43 69.8
TAR629G0666 Trochodendron aralioides HOM05D004077 ORTHO05D004872 4.8e-08 61.6 40 77.5
HPP92_003097 Vanilla planifolia HOM05D004077 ORTHO05D004872 4.8e-08 61.6 39 71.8
GSVIVG01007765001 Vitis vinifera HOM05D004077 ORTHO05D004872 4.8e-08 61.6 40 80.0
EL10Ac4g07782 Beta vulgaris HOM05D006919 ORTHO05D008705 6.2e-08 61.2 40 77.5
CAN.G843.52 Capsicum annuum HOM05D006919 ORTHO05D008705 6.2e-08 61.2 43 69.8
CDE06G1420 Ceratophyllum demersum HOM05D004077 ORTHO05D004872 6.2e-08 61.2 40 80.0
Nn3g16881 Nelumbo nucifera HOM05D004077 ORTHO05D004872 6.2e-08 61.2 40 80.0
Nn4g22787 Nelumbo nucifera HOM05D004077 ORTHO05D004872 6.2e-08 61.2 40 80.0
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 6.2e-08 61.2 40 77.5
Atru.chr9.1714 Acer truncatum HOM05D006919 ORTHO05D008705 8.1e-08 60.8 40 67.5
Ah.11g051660 Amaranthus hybridus HOM05D004077 ORTHO05D004872 8.1e-08 60.8 41 75.6
CSS0015009 Camellia sinensis var. sinensis HOM05D004077 ORTHO05D004872 8.1e-08 60.8 39 74.4
Migut.D01538 Erythranthe guttata HOM05D006919 ORTHO05D008705 1.1e-07 60.5 43 69.8
MBI10_g10241_MAGBIO Magnolia biondii HOM05D004077 ORTHO05D004872 1.1e-07 60.5 40 75.0
Os05g0145000 Oryza sativa ssp. japonica HOM05D004077 ORTHO05D004872 1.1e-07 60.5 39 74.4
Sc12g0005380 Simmondsia chinensis HOM05D004077 ORTHO05D004872 1.1e-07 60.5 40 77.5
Actinidia19095 Actinidia chinensis HOM05D004077 ORTHO05D004872 1.4e-07 60.1 40 75.0
BolC1t03179H Brassica oleracea HOM05D004077 ORTHO05D004872 1.4e-07 60.1 53 60.4
Cpa.g.sc124.49 Carica papaya HOM05D004077 ORTHO05D004872 1.4e-07 60.1 40 77.5
Gohir.A07G060000 Gossypium hirsutum HOM05D006919 ORTHO05D008705 1.4e-07 60.1 43 69.8
MBI19_g25009_MAGBIO Magnolia biondii HOM05D002438 ORTHO05D002617 1.4e-07 60.1 40 77.5
Manes.06G104100 Manihot esculenta HOM05D004077 ORTHO05D004872 1.4e-07 60.1 40 75.0
Aqoxy3G02964 Aquilegia oxysepala HOM05D004077 ORTHO05D004872 1.8e-07 59.7 40 75.0
BraA01t02485Z Brassica rapa HOM05D004077 ORTHO05D004872 1.8e-07 59.7 47 66.0
Dinv20664 Davidia involucrata HOM05D004077 ORTHO05D004872 1.8e-07 59.7 40 75.0
Gohir.D07G064700 Gossypium hirsutum HOM05D006919 ORTHO05D008705 1.8e-07 59.7 43 67.4
Gorai.001G068200 Gossypium raimondii HOM05D006919 ORTHO05D008705 1.8e-07 59.7 43 67.4
MSTRG.9306 Avicennia marina HOM05D006919 ORTHO05D008705 2.4e-07 59.3 43 67.4
AUR62015799 Chenopodium quinoa HOM05D006919 ORTHO05D008705 2.4e-07 59.3 43 74.4
Ca_21911_v3 Cicer arietinum L. HOM05D004077 ORTHO05D004872 2.4e-07 59.3 40 77.5
Migut.D01529 Erythranthe guttata HOM05D006919 ORTHO05D008705 2.4e-07 59.3 43 67.4
Eucgr.B00369 Eucalyptus grandis HOM05D004077 ORTHO05D004872 2.4e-07 59.3 40 75.0
Glyma.04G182100 Glycine max HOM05D004077 ORTHO05D004872 2.4e-07 59.3 39 71.8
Lsat_1_v5_gn_8_720 Lactuca sativa HOM05D006919 ORTHO05D008705 2.4e-07 59.3 43 69.8
MD14G1182400 Malus domestica HOM05D004077 ORTHO05D004872 2.4e-07 59.3 40 77.5
Prupe.5G174900 Prunus persica HOM05D004077 ORTHO05D004872 2.4e-07 59.3 40 77.5
Glyma.06G183300 Glycine max HOM05D004077 ORTHO05D004872 3.1e-07 58.9 39 69.2
TPR.G37440 Trifolium pratense HOM05D004077 ORTHO05D004872 3.1e-07 58.9 40 75.0
vmacro16604 Vaccinium macrocarpon HOM05D004077 ORTHO05D004872 3.1e-07 58.9 50 62.0
Atru.chr9.1680 Acer truncatum HOM05D006919 ORTHO05D008705 4.0e-07 58.5 40 65.0
AL5G27310 Arabidopsis lyrata HOM05D004077 ORTHO05D004872 4.0e-07 58.5 40 72.5
AT3G47990 Arabidopsis thaliana HOM05D004077 ORTHO05D004872 4.0e-07 58.5 40 72.5
BcaB05g22899 Brassica carinata HOM05D004077 ORTHO05D004872 4.0e-07 58.5 40 72.5
BcaB08g36240 Brassica carinata HOM05D004077 ORTHO05D004872 4.0e-07 58.5 46 63.0
A01p25360 Brassica napus HOM05D004077 ORTHO05D004872 4.0e-07 58.5 44 68.2
C01p32380 Brassica napus HOM05D004077 ORTHO05D004872 4.0e-07 58.5 44 68.2
Carub.0005s1410 Capsella rubella HOM05D004077 ORTHO05D004872 4.0e-07 58.5 40 72.5
AUR62008220 Chenopodium quinoa HOM05D004077 ORTHO05D004872 4.0e-07 58.5 41 68.3
AUR62030973 Chenopodium quinoa HOM05D004077 ORTHO05D004872 4.0e-07 58.5 41 68.3
Cc04_g06200 Coffea canephora HOM05D006919 ORTHO05D008705 4.0e-07 58.5 43 69.8
Lj5C123T9 Lonicera japonica HOM05D004077 ORTHO05D004872 4.0e-07 58.5 40 75.0
Sp5g13990 Schrenkiella parvula HOM05D004077 ORTHO05D004872 4.0e-07 58.5 40 72.5
TWI15G0436 Tripterygium wilfordii HOM05D004077 ORTHO05D004872 4.0e-07 58.5 40 75.0
VMungo0464G0753 Vigna mungo HOM05D006919 ORTHO05D008705 4.0e-07 58.5 43 65.1
BcaC09g49837 Brassica carinata HOM05D004077 ORTHO05D004872 5.3e-07 58.2 41 70.7
Ciclev10010588m.g Citrus clementina HOM05D006919 ORTHO05D008705 5.3e-07 58.2 40 65.0
COL.COLO4_04600 Corchorus olitorius HOM05D004077 ORTHO05D004872 5.3e-07 58.2 40 72.5
Gohir.A03G096433 Gossypium hirsutum HOM05D004077 ORTHO05D004872 5.3e-07 58.2 40 75.0
Gohir.D02G117400 Gossypium hirsutum HOM05D004077 ORTHO05D004872 5.3e-07 58.2 40 75.0
Gorai.005G136200 Gossypium raimondii HOM05D004077 ORTHO05D004872 5.3e-07 58.2 40 75.0
Nitab4.5_0000852g0060 Nicotiana tabacum HOM05D004077 ORTHO05D004872 5.3e-07 58.2 40 75.0
Nitab4.5_0005862g0030 Nicotiana tabacum HOM05D004077 ORTHO05D004872 5.3e-07 58.2 40 75.0
Oeu026273.1 Olea europaea HOM05D006919 ORTHO05D008705 5.3e-07 58.2 43 69.8
Phvul.003G199700 Phaseolus vulgaris HOM05D004077 ORTHO05D004872 5.3e-07 58.2 40 75.0
Rhsim12G0164000 Rhododendron simsii HOM05D004077 ORTHO05D004872 5.3e-07 58.2 40 72.5
Thecc.03G010600 Theobroma cacao HOM05D004077 ORTHO05D004872 5.3e-07 58.2 40 72.5
VMungo1215G2971 Vigna mungo HOM05D004077 ORTHO05D004872 5.3e-07 58.2 40 75.0
BcaB01g00856 Brassica carinata HOM05D004077 ORTHO05D004872 6.9e-07 57.8 40 72.5
CARHR276610 Cardamine hirsuta HOM05D004077 ORTHO05D004872 6.9e-07 57.8 41 68.3
MD06G1175600 Malus domestica HOM05D004077 ORTHO05D004872 6.9e-07 57.8 40 75.0
Ciclev10020585m.g Citrus clementina HOM05D004077 ORTHO05D004872 9.0e-07 57.4 40 72.5
Haze_07458 Corylus avellana HOM05D004077 ORTHO05D004872 9.0e-07 57.4 40 75.0
Duzib068G0125 Durio zibethinus HOM05D004077 ORTHO05D004872 9.0e-07 57.4 40 72.5
Duzib084G0606 Durio zibethinus HOM05D004077 ORTHO05D004872 9.0e-07 57.4 40 70.0
Glyma.05G037000 Glycine max HOM05D004077 ORTHO05D004872 9.0e-07 57.4 40 75.0
Glyma.17G090200 Glycine max HOM05D004077 ORTHO05D004872 9.0e-07 57.4 40 75.0
HanXRQChr16g0517301 Helianthus annuus HOM05D004077 ORTHO05D004872 9.0e-07 57.4 40 72.5
Psat4g057720 Pisum sativum HOM05D004077 ORTHO05D004872 9.0e-07 57.4 40 75.0
MSTRG.23125 Avicennia marina HOM05D004077 ORTHO05D004872 1.2e-06 57.0 40 72.5
CARHR156710 Cardamine hirsuta HOM05D004077 ORTHO05D004872 1.2e-06 57.0 40 70.0
Cpa.g.sc3.392 Carica papaya HOM05D006919 ORTHO05D008705 1.2e-06 57.0 37 70.3
Lj4g0025722 Lotus japonicus HOM05D004077 ORTHO05D004872 1.2e-06 57.0 40 75.0
MD06G1227700 Malus domestica HOM05D006919 ORTHO05D008705 1.2e-06 57.0 43 62.8
Solyc03g114280.3 Solanum lycopersicum HOM05D004077 ORTHO05D004872 1.2e-06 57.0 40 72.5
Sopen03g033380 Solanum pennellii HOM05D004077 ORTHO05D004872 1.2e-06 57.0 40 72.5
PGSC0003DMG400024497 Solanum tuberosum HOM05D004077 ORTHO05D004872 1.2e-06 57.0 40 72.5
vmacro16410 Vaccinium macrocarpon HOM05D006919 ORTHO05D008705 1.2e-06 57.0 43 65.1
BcaB02g10676 Brassica carinata HOM05D004077 ORTHO05D004872 1.5e-06 56.6 40 70.0
BcaC07g39282 Brassica carinata HOM05D004077 ORTHO05D004872 1.5e-06 56.6 40 70.0
A06p19650 Brassica napus HOM05D004077 ORTHO05D004872 1.5e-06 56.6 40 70.0
C08p22910 Brassica napus HOM05D004077 ORTHO05D004872 1.5e-06 56.6 40 70.0
BolC8t49927H Brassica oleracea HOM05D004077 ORTHO05D004872 1.5e-06 56.6 40 70.0
BraA06t25045Z Brassica rapa HOM05D004077 ORTHO05D004872 1.5e-06 56.6 40 70.0
AUR62020416 Chenopodium quinoa HOM05D006919 ORTHO05D008705 1.5e-06 56.6 43 72.1
Thecc.03G055400 Theobroma cacao HOM05D006919 ORTHO05D008705 1.5e-06 56.6 43 62.8
TAR629G0573 Trochodendron aralioides HOM05D006919 ORTHO05D008705 1.5e-06 56.6 61 49.2
MSTRG.4378 Avicennia marina HOM05D004077 ORTHO05D004872 2.0e-06 56.2 40 70.0
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 2.0e-06 56.2 40 72.5
Duzib205G1726 Durio zibethinus HOM05D004077 ORTHO05D004872 2.0e-06 56.2 40 72.5
THA.LOC104818231 Tarenaya hassleriana HOM05D004077 ORTHO05D004872 2.0e-06 56.2 40 70.0
arahy.Tifrunner.gnm1.ann1.7S5VF9 Arachis hypogaea HOM05D004077 ORTHO05D004872 2.6e-06 55.8 40 72.5
arahy.Tifrunner.gnm1.ann1.TGZ6UB Arachis hypogaea HOM05D004077 ORTHO05D004872 2.6e-06 55.8 40 72.5
Migut.I00021 Erythranthe guttata HOM05D004077 ORTHO05D004872 2.6e-06 55.8 40 70.0
Thhalv10010583m.g Eutrema salsugineum HOM05D004077 ORTHO05D004872 2.6e-06 55.8 40 70.0
Medtr4g106960 Medicago truncatula HOM05D004077 ORTHO05D004872 2.6e-06 55.8 40 70.0
Phvul.004G149400 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 2.6e-06 55.8 43 62.8
Phvul.004G150300 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 2.6e-06 55.8 43 62.8
BraA06t23646Z Brassica rapa HOM05D006919 ORTHO05D008705 3.4e-06 55.5 44 56.8
CANSAT80G1493 Cannabis sativa HOM05D004077 ORTHO05D004872 3.4e-06 55.5 40 70.0
CARHR038160 Cardamine hirsuta HOM05D006919 ORTHO05D008705 3.4e-06 55.5 36 69.4
Prupe.5G234100 Prunus persica HOM05D006919 ORTHO05D008705 3.4e-06 55.5 43 60.5
QL10p030230 Quercus lobata HOM05D006919 ORTHO05D008705 3.4e-06 55.5 40 62.5
SGA_v2.0_scaffold90G27947 Striga asiatica HOM05D004077 ORTHO05D004872 3.4e-06 55.5 40 70.0
ATR0730G177 Amborella trichopoda HOM05D004077 ORTHO05D004872 4.5e-06 55.1 40 70.0
Ca_25336_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 4.5e-06 55.1 43 65.1
Ca_29640_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 4.5e-06 55.1 43 65.1
Nn4g24311 Nelumbo nucifera HOM05D006919 ORTHO05D008705 4.5e-06 55.1 43 62.8
Peaxi162Scf00689g00326 Petunia axillaris HOM05D004077 ORTHO05D004872 4.5e-06 55.1 40 70.0
Psat1g030800 Pisum sativum HOM05D006919 ORTHO05D008705 4.5e-06 55.1 43 65.1
Eucgr.B00878 Eucalyptus grandis HOM05D006919 ORTHO05D008705 5.8e-06 54.7 43 62.8
Eucgr.B00996 Eucalyptus grandis HOM05D006919 ORTHO05D008705 5.8e-06 54.7 43 62.8
Aqoxy3G04092 Aquilegia oxysepala HOM05D006919 ORTHO05D008705 7.6e-06 54.3 43 60.5
arahy.Tifrunner.gnm1.ann1.2R737Y Arachis hypogaea HOM05D006919 ORTHO05D008705 7.6e-06 54.3 43 62.8
arahy.Tifrunner.gnm1.ann1.54PB3V Arachis hypogaea HOM05D006919 ORTHO05D008705 7.6e-06 54.3 43 62.8
arahy.Tifrunner.gnm1.ann1.95HZXM Arachis hypogaea HOM05D006919 ORTHO05D008705 7.6e-06 54.3 43 62.8
arahy.Tifrunner.gnm1.ann1.CTKR59 Arachis hypogaea HOM05D006919 ORTHO05D008705 7.6e-06 54.3 43 62.8
ClCG06G016940 Citrullus lanatus HOM05D004077 ORTHO05D004872 7.6e-06 54.3 43 69.8
Haze_18872 Corylus avellana HOM05D006919 ORTHO05D008705 7.6e-06 54.3 43 53.5
HanXRQChr05g0142681 Helianthus annuus HOM05D006919 ORTHO05D008705 7.6e-06 54.3 43 72.1
CiPaw.11G027500 Carya illinoinensis HOM05D004077 ORTHO05D004872 1.0e-05 53.9 40 72.5
MELO3C017097.2 Cucumis melo HOM05D004077 ORTHO05D004872 1.0e-05 53.9 40 72.5
QL10p011905 Quercus lobata HOM05D004077 ORTHO05D004872 1.0e-05 53.9 40 70.0
Hund01978 Selenicereus undatus HOM05D006919 ORTHO05D008705 1.0e-05 53.9 43 65.1
THA.LOC104820349 Tarenaya hassleriana HOM05D006919 ORTHO05D008705 1.0e-05 53.9 43 60.5


User provided reference genes

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