Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045994 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 7.3e-118 427.2 206 100.0
Hma1.2p1_0514F.1_g169980 Hydrangea macrophylla HOM05D008129 ORTHO05D010232 3.2e-65 252.3 186 69.4
Dinv38993 Davidia involucrata HOM05D008129 ORTHO05D010232 6.1e-64 248.1 185 70.3
CSS0008314 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 1.3e-61 240.4 203 63.5
Rhsim07G0093300 Rhododendron simsii HOM05D008129 ORTHO05D010232 6.7e-55 218.0 191 62.3
TAR629G0329 Trochodendron aralioides HOM05D008129 ORTHO05D010232 2.9e-50 202.6 176 55.7
Lj2P194T38 Lonicera japonica HOM05D008129 ORTHO05D010232 3.2e-49 199.1 191 54.5
RcHm_v2.0_Chr7g0198961 Rosa chinensis HOM05D008129 ORTHO05D010232 1.6e-48 196.8 216 50.5
Ciclev10022388m.g Citrus clementina HOM05D008129 ORTHO05D010232 8.0e-48 194.5 171 57.3
Thecc.03G273100 Theobroma cacao HOM05D008129 ORTHO05D010232 1.0e-47 194.1 179 55.3
FvH4_5g01760 Fragaria vesca HOM05D008129 ORTHO05D010232 1.4e-47 193.7 195 55.4
FAN18G4443 Fragaria x ananassa HOM05D008129 ORTHO05D010232 1.4e-47 193.7 195 55.4
Cfa012120 Carpinus fangiana HOM05D008129 ORTHO05D010232 3.0e-47 192.6 179 54.2
Haze_08930 Corylus avellana HOM05D008129 ORTHO05D010232 3.0e-47 192.6 178 54.5
Prupe.5G093100 Prunus persica HOM05D008129 ORTHO05D010232 4.0e-47 192.2 210 49.5
Gohir.D03G153100 Gossypium hirsutum HOM05D008129 ORTHO05D010232 1.5e-46 190.3 174 55.7
FAN04G1130 Fragaria x ananassa HOM05D008129 ORTHO05D010232 7.5e-46 188.0 195 54.4
FAN13G1875 Fragaria x ananassa HOM05D008129 ORTHO05D010232 7.5e-46 188.0 195 53.8
FAN08G0538 Fragaria x ananassa HOM05D008129 ORTHO05D010232 1.7e-45 186.8 195 53.8
MD00G1110200 Malus domestica HOM05D008129 ORTHO05D010232 3.7e-45 185.7 194 52.1
MD04G1064800 Malus domestica HOM05D008129 ORTHO05D010232 3.7e-45 185.7 171 53.8
QL12p017600 Quercus lobata HOM05D008129 ORTHO05D010232 4.8e-45 185.3 190 53.7
QL12p017610 Quercus lobata HOM05D008129 ORTHO05D010232 6.3e-45 184.9 191 53.4
Oeu029783.1 Olea europaea HOM05D008129 ORTHO05D010232 1.1e-44 184.1 180 54.4
Gohir.A03G018500 Gossypium hirsutum HOM05D008129 ORTHO05D010232 1.4e-44 183.7 174 54.6
Sabra01G0081800 Salix brachista HOM05D008129 ORTHO05D010232 1.8e-44 183.3 172 54.7
Gorai.003G160700 Gossypium raimondii HOM05D008129 ORTHO05D010232 1.2e-43 180.6 142 60.6
CiPaw.12G097000 Carya illinoinensis HOM05D008129 ORTHO05D010232 2.0e-43 179.9 178 53.9
COL.COLO4_05253 Corchorus olitorius HOM05D008129 ORTHO05D010232 1.3e-42 177.2 173 54.3
Potri.001G108300 Populus trichocarpa HOM05D008129 ORTHO05D010232 3.8e-42 175.6 174 52.9
AUR62010633 Chenopodium quinoa HOM05D008129 ORTHO05D010232 5.0e-42 175.3 187 50.8
Manes.01G065300 Manihot esculenta HOM05D008129 ORTHO05D010232 1.5e-41 173.7 173 50.9
CiPaw.11G139400 Carya illinoinensis HOM05D008129 ORTHO05D010232 3.2e-41 172.6 179 52.0
SGA_v2.0_scaffold144G35967 Striga asiatica HOM05D008129 ORTHO05D010232 4.2e-41 172.2 179 51.4
ECA246G2221 Erigeron canadensis HOM05D008129 ORTHO05D010232 2.1e-40 169.9 206 47.1
Cc08_g14170 Coffea canephora HOM05D008129 ORTHO05D010232 4.0e-39 165.6 193 49.7
Nn6g34205 Nelumbo nucifera HOM05D008129 ORTHO05D010232 3.7e-37 159.1 194 46.4
EL10Ac5g12748 Beta vulgaris HOM05D008129 ORTHO05D010232 1.2e-35 154.1 188 46.8
Nitab4.5_0003924g0090 Nicotiana tabacum HOM05D008129 ORTHO05D010232 1.2e-35 154.1 180 46.1
PGSC0003DMG400003052 Solanum tuberosum HOM05D008129 ORTHO05D010232 1.0e-34 151.0 184 46.7
Migut.E01284 Erythranthe guttata HOM05D008129 ORTHO05D010232 4.2e-33 145.6 157 48.4
TAR375G1113 Trochodendron aralioides HOM05D008129 ORTHO05D010232 1.8e-31 140.2 121 55.4
Solyc08g080530.1 Solanum lycopersicum HOM05D008129 ORTHO05D010232 4.0e-31 139.0 186 41.9
Medtr8g096860 Medicago truncatula HOM05D008129 ORTHO05D010232 2.2e-29 133.3 171 47.4
SGA_v2.0_scaffold385G50459 Striga asiatica HOM05D008129 ORTHO05D010232 4.9e-29 132.1 118 54.2
TPR.G12796 Trifolium pratense HOM05D000268 ORTHO05D000261 2.0e-27 126.7 170 44.1
Lalb_Chr09g0333221 Lupinus albus HOM05D008129 ORTHO05D010232 4.5e-27 125.6 174 40.2
Psat7g036080 Pisum sativum HOM05D008129 ORTHO05D010232 1.5e-25 120.6 173 43.4
Glyma.11G025800 Glycine max HOM05D008129 ORTHO05D010232 7.3e-25 118.2 171 43.9
vmacro00355 Vaccinium macrocarpon HOM05D001075 ORTHO05D001779 1.2e-24 117.5 100 63.0
Eucgr.D01909 Eucalyptus grandis HOM05D008129 ORTHO05D010232 2.1e-24 116.7 157 39.5
Thecc.03G273000 Theobroma cacao HOM05D008129 ORTHO05D010232 2.1e-24 116.7 162 43.8
Eucgr.E00553 Eucalyptus grandis HOM05D008129 ORTHO05D010232 6.8e-23 111.7 154 39.6
MELO3C005638.2 Cucumis melo HOM05D008129 ORTHO05D010232 2.2e-21 106.7 174 41.4
CsaV3_5G003170 Cucumis sativus L. HOM05D008129 ORTHO05D010232 6.4e-21 105.1 176 41.5
COL.COLO4_05254 Corchorus olitorius HOM05D008129 ORTHO05D010232 5.4e-20 102.1 175 37.7
VMungo1215G1765 Vigna mungo HOM05D008129 ORTHO05D010232 1.6e-19 100.5 171 39.2
Gorai.003G160800 Gossypium raimondii HOM05D008129 ORTHO05D010232 3.5e-19 99.4 146 42.5
Phvul.002G155100 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 3.0e-18 96.3 171 38.0
Gohir.D03G153200 Gossypium hirsutum HOM05D008129 ORTHO05D010232 3.9e-18 95.9 145 41.4
Dinv37674 Davidia involucrata HOM05D008129 ORTHO05D010232 2.5e-17 93.2 63 73.0
Gohir.A03G018400 Gossypium hirsutum HOM05D008129 ORTHO05D010232 9.5e-17 91.3 147 39.5
Zm00001eb269500 Zea mays HOM05D041313 ORTHO05D010232 1.4e-15 87.4 196 32.1
Oeu062744.1 Olea europaea HOM05D008129 ORTHO05D010232 8.9e-15 84.7 87 54.0
Lj2g0000650 Lotus japonicus HOM05D008129 ORTHO05D010232 2.0e-14 83.6 173 38.2
Phvul.002G286400 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 2.6e-14 83.2 173 32.9
Os06g0128800 Oryza sativa ssp. japonica HOM05D041313 ORTHO05D010232 4.4e-14 82.4 170 32.9
AUR62017276 Chenopodium quinoa HOM05D008129 ORTHO05D010232 2.2e-13 80.1 83 51.8
Lsat_1_v5_gn_3_8420 Lactuca sativa HOM05D008129 ORTHO05D010232 2.9e-13 79.7 69 59.4
Carub.0005s2786 Capsella rubella HOM05D002113 ORTHO05D002124 1.6e-11 73.9 182 31.9
SEGI_31534 Sequoiadendron giganteum HOM05D001109 ORTHO05D002124 1.6e-11 73.9 141 31.9
ClCG01G003050 Citrullus lanatus HOM05D008129 ORTHO05D010232 2.0e-11 73.6 146 38.4
THA.LOC104817276 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 2.0e-11 73.6 176 29.5
Sopen08g028850 Solanum pennellii HOM05D008129 ORTHO05D010232 3.5e-11 72.8 78 48.7
PGR031G2634 Punica granatum HOM05D002113 ORTHO05D002124 4.6e-11 72.4 186 31.2
Aqoxy7G00401 Aquilegia oxysepala HOM05D002113 ORTHO05D002124 6.0e-11 72.0 142 32.4
THA.LOC104802020 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 6.0e-11 72.0 143 30.8
MD07G1126500 Malus domestica HOM05D002113 ORTHO05D002124 1.3e-10 70.9 179 33.5
BcaC07g40624 Brassica carinata HOM05D002113 ORTHO05D002124 2.3e-10 70.1 184 30.4
C08p36070 Brassica napus HOM05D002113 ORTHO05D002124 2.3e-10 70.1 184 30.4
BolC8t51187H Brassica oleracea HOM05D002113 ORTHO05D002124 2.3e-10 70.1 184 30.4
A09p53270 Brassica napus HOM05D002113 ORTHO05D002124 3.0e-10 69.7 184 30.4
BraA09t40751Z Brassica rapa HOM05D002113 ORTHO05D002124 3.0e-10 69.7 184 30.4
CAN.G981.9 Capsicum annuum HOM05D008129 ORTHO05D010232 8.6e-10 68.2 76 51.3
Duzib138G1209 Durio zibethinus HOM05D002113 ORTHO05D002124 8.6e-10 68.2 171 29.8
MD01G1049300 Malus domestica HOM05D002113 ORTHO05D002124 1.1e-09 67.8 164 32.3
MD01G1049600 Malus domestica HOM05D002113 ORTHO05D002124 1.1e-09 67.8 179 33.5
AL4G44960 Arabidopsis lyrata HOM05D002113 ORTHO05D002124 1.9e-09 67.0 142 31.7
COL.COLO4_12607 Corchorus olitorius HOM05D002113 ORTHO05D002124 2.5e-09 66.6 172 30.2
AT3G61190 Arabidopsis thaliana HOM05D002113 ORTHO05D002124 4.3e-09 65.9 185 30.3
C04p31520 Brassica napus HOM05D002113 ORTHO05D002124 4.3e-09 65.9 176 29.5
PSO832G1537 Papaver somniferum HOM05D000865 ORTHO05D000739 5.6e-09 65.5 182 25.3
Sp5g02180 Schrenkiella parvula HOM05D002113 ORTHO05D002124 5.6e-09 65.5 177 29.4
Carub.0004s2847 Capsella rubella HOM05D002113 ORTHO05D002124 1.2e-08 64.3 150 32.7
Prupe.2G157300 Prunus persica HOM05D002113 ORTHO05D002124 1.2e-08 64.3 176 31.8
PSO478G4233 Papaver somniferum HOM05D002113 ORTHO05D002124 1.6e-08 63.9 142 31.0
PSO591G0270 Papaver somniferum HOM05D000865 ORTHO05D000739 1.6e-08 63.9 182 25.3
BcaC02g12183 Brassica carinata HOM05D002113 ORTHO05D002124 2.1e-08 63.5 140 29.3
BcaC02g12184 Brassica carinata HOM05D002113 ORTHO05D002124 2.1e-08 63.5 140 29.3
Oeu058608.1 Olea europaea HOM05D002113 ORTHO05D002124 2.1e-08 63.5 144 31.9
C04p71820 Brassica napus HOM05D002113 ORTHO05D002124 2.8e-08 63.2 149 28.9
Prupe.2G157400 Prunus persica HOM05D002113 ORTHO05D002124 2.8e-08 63.2 184 31.5
C04p06690 Brassica napus HOM05D002113 ORTHO05D002124 3.6e-08 62.8 142 29.6
BolC4t22291H Brassica oleracea HOM05D002113 ORTHO05D002124 3.6e-08 62.8 142 29.6
BolC4t24700H Brassica oleracea HOM05D002113 ORTHO05D002124 3.6e-08 62.8 176 29.0
Sabra02G0123200 Salix brachista HOM05D002113 ORTHO05D002124 4.7e-08 62.4 175 27.4
A04p34010 Brassica napus HOM05D002113 ORTHO05D002124 6.2e-08 62.0 149 28.2
BraA04t18863Z Brassica rapa HOM05D002113 ORTHO05D002124 6.2e-08 62.0 149 28.2
AT2G45760 Arabidopsis thaliana HOM05D002113 ORTHO05D002124 8.1e-08 61.6 143 31.5
Cpa.g.sc2701.2 Carica papaya HOM05D002113 ORTHO05D002124 8.1e-08 61.6 142 28.2
Nitab4.5_0005213g0010 Nicotiana tabacum HOM05D008129 ORTHO05D010232 8.1e-08 61.6 71 49.3
PGR031G2954 Punica granatum HOM05D002113 ORTHO05D002124 1.1e-07 61.2 182 26.4
Sabra14G0056900 Salix brachista HOM05D002113 ORTHO05D002124 1.1e-07 61.2 175 29.7
Atru.chr5.424 Acer truncatum HOM05D002113 ORTHO05D002124 1.4e-07 60.8 142 31.7
AL5G43450 Arabidopsis lyrata HOM05D002113 ORTHO05D002124 1.8e-07 60.5 182 28.0
BcaB02g09009 Brassica carinata HOM05D002113 ORTHO05D002124 1.8e-07 60.5 142 28.9
BcaB02g09011 Brassica carinata HOM05D002113 ORTHO05D002124 1.8e-07 60.5 142 29.6
Thhalv10006244m.g Eutrema salsugineum HOM05D002113 ORTHO05D002124 1.8e-07 60.5 163 31.3
Potri.002G155300 Populus trichocarpa HOM05D002113 ORTHO05D002124 1.8e-07 60.5 174 27.6
A05p05760 Brassica napus HOM05D002113 ORTHO05D002124 2.3e-07 60.1 142 29.6
BraA05t19542Z Brassica rapa HOM05D002113 ORTHO05D002124 2.3e-07 60.1 142 28.9
Potri.014G078700 Populus trichocarpa HOM05D002113 ORTHO05D002124 2.3e-07 60.1 175 30.3
MD07G1126400 Malus domestica HOM05D002113 ORTHO05D002124 3.1e-07 59.7 144 33.3
SalBow3G1880 Salvia bowleyana HOM05D002113 ORTHO05D002124 3.1e-07 59.7 181 30.4
BolC4t28680H Brassica oleracea HOM05D002113 ORTHO05D002124 4.0e-07 59.3 149 27.5
Eucgr.E00195 Eucalyptus grandis HOM05D002113 ORTHO05D002124 4.0e-07 59.3 187 27.8
Sabra14G0056800 Salix brachista HOM05D002113 ORTHO05D002124 5.2e-07 58.9 174 29.9
Sp4g27840 Schrenkiella parvula HOM05D002113 ORTHO05D002124 6.8e-07 58.5 142 30.3
Thecc.04G283200 Theobroma cacao HOM05D000865 ORTHO05D000739 6.8e-07 58.5 174 25.9
CARHR141040 Cardamine hirsuta HOM05D002113 ORTHO05D002124 8.9e-07 58.2 187 28.3
Haze_11464 Corylus avellana HOM05D001109 ORTHO05D001051 8.9e-07 58.2 217 27.6
Cfa014787 Carpinus fangiana HOM05D001109 ORTHO05D001051 1.2e-06 57.8 175 29.7
CiPaw.01G177400 Carya illinoinensis HOM05D001109 ORTHO05D001051 1.2e-06 57.8 167 28.7
MBI04_g04725_MAGBIO Magnolia biondii HOM05D002113 ORTHO05D002124 1.5e-06 57.4 170 27.6
Eucgr.E00206 Eucalyptus grandis HOM05D002113 ORTHO05D002124 2.0e-06 57.0 184 27.7
BcaC02g10210 Brassica carinata HOM05D002113 ORTHO05D002124 2.6e-06 56.6 119 29.4
Lj2C45T9 Lonicera japonica HOM05D001109 ORTHO05D001051 2.6e-06 56.6 152 28.3
Manes.09G147300 Manihot esculenta HOM05D001109 ORTHO05D001051 2.6e-06 56.6 142 28.9
Aqoxy4G02273 Aquilegia oxysepala HOM05D002113 ORTHO05D002124 3.4e-06 56.2 145 27.6
Eucgr.E00199 Eucalyptus grandis HOM05D002113 ORTHO05D002124 3.4e-06 56.2 146 30.8
Thhalv10001640m.g Eutrema salsugineum HOM05D002113 ORTHO05D002124 3.4e-06 56.2 142 27.5
Eucgr.L01644 Eucalyptus grandis HOM05D002113 ORTHO05D002124 4.4e-06 55.8 145 31.0
Hma1.2p1_1336F.1_g276460 Hydrangea macrophylla HOM05D001109 ORTHO05D001051 4.4e-06 55.8 149 28.2
A03p25360 Brassica napus HOM05D002113 ORTHO05D002124 7.5e-06 55.1 140 27.9
Dinv29799 Davidia involucrata HOM05D001109 ORTHO05D001051 7.5e-06 55.1 172 25.6
BcaC01g05106 Brassica carinata HOM05D002113 ORTHO05D002124 9.9e-06 54.7 140 29.3
C03p30270 Brassica napus HOM05D002113 ORTHO05D002124 9.9e-06 54.7 140 29.3
BolC3t15376H Brassica oleracea HOM05D002113 ORTHO05D002124 9.9e-06 54.7 140 29.3
BraA03t11742Z Brassica rapa HOM05D002113 ORTHO05D002124 9.9e-06 54.7 140 29.3


User provided reference genes

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