Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.4e-86 321.2 160 100.0
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.4e-86 321.2 160 100.0
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.2e-75 286.6 160 88.1
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 5.9e-75 284.3 157 90.4
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 8.6e-74 280.4 160 85.6
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 4.3e-73 278.1 155 87.1
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 4.3e-73 278.1 160 86.2
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 5.6e-73 277.7 157 86.6
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 5.6e-73 277.7 157 86.6
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 5.6e-73 277.7 157 86.6
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 5.6e-73 277.7 156 85.9
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 7.3e-73 277.3 161 85.7
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 1.6e-72 276.2 160 84.4
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.6e-72 276.2 156 85.9
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 4.7e-72 274.6 160 83.1
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 4.7e-72 274.6 156 84.6
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 6.1e-72 274.2 160 84.4
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 8.0e-72 273.9 160 83.8
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 1.0e-71 273.5 160 83.1
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 1.4e-71 273.1 160 82.5
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 1.8e-71 272.7 161 83.2
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 2.3e-71 272.3 160 80.0
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 2.3e-71 272.3 157 82.2
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.1e-71 271.9 156 85.3
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.1e-71 271.9 156 85.3
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 3.1e-71 271.9 156 85.3
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 5.2e-71 271.2 160 83.8
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 8.9e-71 270.4 160 80.6
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 8.9e-71 270.4 156 84.6
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 8.9e-71 270.4 159 82.4
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.5e-70 269.6 160 83.1
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.5e-70 269.6 160 83.1
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 2.0e-70 269.2 160 78.8
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 3.4e-70 268.5 160 83.1
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 4.4e-70 268.1 160 85.0
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 5.8e-70 267.7 157 82.2
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 5.8e-70 267.7 160 81.9
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 7.5e-70 267.3 160 80.6
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 9.8e-70 266.9 156 84.0
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 1.3e-69 266.5 160 77.5
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 1.7e-69 266.2 155 83.9
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 1.7e-69 266.2 160 81.2
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 2.2e-69 265.8 160 78.1
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 2.2e-69 265.8 160 81.2
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 2.9e-69 265.4 161 82.6
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.9e-69 265.4 156 84.6
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.7e-69 265.0 156 84.0
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.7e-69 265.0 156 84.6
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 1.4e-68 263.1 155 81.3
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 1.4e-68 263.1 155 81.3
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 1.9e-68 262.7 154 83.8
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.9e-68 262.7 156 80.8
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 2.4e-68 262.3 156 82.7
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 2.4e-68 262.3 160 80.0
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 3.2e-68 261.9 155 80.6
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 3.2e-68 261.9 153 81.7
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 4.1e-68 261.5 154 81.8
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 4.1e-68 261.5 153 83.7
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 5.4e-68 261.2 153 82.4
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 5.4e-68 261.2 161 76.4
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.2e-67 260.0 160 81.2
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 4.6e-67 258.1 155 78.7
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 6.0e-67 257.7 160 77.5
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.0e-66 256.9 157 77.7
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 1.0e-66 256.9 160 81.9
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 1.3e-66 256.5 157 79.0
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.7e-66 256.1 159 81.8
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 2.3e-66 255.8 180 72.8
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.3e-66 255.8 141 88.7
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 2.3e-66 255.8 159 79.2
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 2.3e-66 255.8 160 75.0
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 6.6e-66 254.2 154 79.9
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 1.1e-65 253.4 157 77.1
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 1.9e-65 252.7 162 79.6
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 3.3e-65 251.9 161 77.6
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 3.3e-65 251.9 153 78.4
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 5.6e-65 251.1 160 76.2
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 5.6e-65 251.1 161 72.7
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 5.6e-65 251.1 160 80.0
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 5.6e-65 251.1 153 77.8
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 7.3e-65 250.8 159 78.6
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 7.3e-65 250.8 160 76.2
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 9.5e-65 250.4 179 71.5
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 9.5e-65 250.4 155 76.8
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 1.6e-64 249.6 158 78.5
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 1.6e-64 249.6 160 76.2
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 8.0e-64 247.3 153 78.4
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 1.1e-63 246.9 142 83.8
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 1.1e-63 246.9 141 85.1
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 1.8e-63 246.1 147 78.9
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 4.0e-63 245.0 155 75.5
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 4.0e-63 245.0 153 78.4
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.2e-62 243.4 141 83.0
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 2.6e-62 242.3 160 73.1
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 2.6e-62 242.3 176 68.8
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 4.4e-62 241.5 158 75.9
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 4.4e-62 241.5 143 78.3
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 1.7e-61 239.6 160 76.9
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 1.9e-60 236.1 149 75.8
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 5.4e-60 234.6 141 79.4
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 7.8e-59 230.7 157 70.7
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 1.0e-58 230.3 157 72.0
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 2.3e-58 229.2 157 71.3
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 6.6e-58 227.6 157 70.7
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 5.6e-57 224.6 157 69.4
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 5.6e-57 224.6 157 70.1
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 5.6e-57 224.6 157 70.1
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 2.1e-56 222.6 143 74.8
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.1e-55 220.3 157 68.8
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.1e-55 220.3 157 68.8
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 1.4e-55 219.9 157 69.4
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.4e-55 219.9 157 68.8
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.4e-55 219.9 157 68.8
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 1.8e-55 219.5 141 75.2
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 4.0e-55 218.4 141 74.5
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.4e-54 215.3 146 73.3
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 7.5e-54 214.2 157 66.9
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 1.3e-53 213.4 157 68.2
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 8.3e-53 210.7 201 55.7
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 9.2e-52 207.2 127 77.2
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 1.2e-51 206.8 154 64.3
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 4.3e-49 198.4 156 67.9
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 3.8e-45 185.3 113 77.0
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 6.0e-43 177.9 128 65.6
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 1.1e-39 167.2 120 68.3
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 2.0e-38 162.9 93 83.9
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 7.1e-36 154.5 93 78.5
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 4.6e-35 151.8 154 53.2
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 7.8e-35 151.0 153 49.0
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 1.4e-31 140.2 87 77.0
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 5.8e-30 134.8 98 67.3
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 1.4e-28 130.2 158 45.6
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 2.4e-28 129.4 78 78.2
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 3.4e-22 109.0 125 46.4
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 7.1e-20 101.3 125 43.2
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 9.0e-15 84.3 50 84.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.4e-14 82.4 48 79.2


User provided reference genes

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