Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045913 Camellia sinensis var. sinensis HOM05D005986 ORTHO05D007467 1.9e-56 222.2 107 100.0
vmacro15979 Vaccinium macrocarpon HOM05D005986 ORTHO05D007467 3.7e-12 75.1 58 77.6
Rhsim12G0090600 Rhododendron simsii HOM05D005986 ORTHO05D007467 5.8e-10 67.8 49 81.6
Cfa012833 Carpinus fangiana HOM05D005986 ORTHO05D007467 7.6e-10 67.4 37 91.9
GSVIVG01001142001 Vitis vinifera HOM05D005986 ORTHO05D007467 1.0e-09 67.0 36 97.2
Actinidia33985 Actinidia chinensis HOM05D005986 ORTHO05D007467 1.3e-09 66.6 36 94.4
Haze_12546 Corylus avellana HOM05D005986 ORTHO05D007467 1.3e-09 66.6 36 94.4
Migut.K01148 Erythranthe guttata HOM05D005986 ORTHO05D007467 3.8e-09 65.1 36 91.7
Thhalv10004270m.g Eutrema salsugineum HOM05D005986 ORTHO05D007467 3.8e-09 65.1 36 91.7
QL03p046965 Quercus lobata HOM05D005986 ORTHO05D007467 3.8e-09 65.1 36 88.9
Aa31LG3G14160 Aethionema arabicum HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 88.9
A06p39510 Brassica napus HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 88.9
C07p38760 Brassica napus HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 88.9
BolC7t44395H Brassica oleracea HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 88.9
BraA06t26866Z Brassica rapa HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 88.9
Carub.0008s0731 Capsella rubella HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 88.9
CARHR184430 Cardamine hirsuta HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 88.9
Dinv07612 Davidia involucrata HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 91.7
Nn4g22038 Nelumbo nucifera HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 88.9
PGR102G0450 Punica granatum HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 91.7
Sp2g18360 Schrenkiella parvula HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 88.9
Sc11g0000020 Simmondsia chinensis HOM05D005986 ORTHO05D007467 4.9e-09 64.7 36 88.9
AT5G47860 Arabidopsis thaliana HOM05D005986 ORTHO05D007467 6.5e-09 64.3 36 86.1
Cpa.g.sc102.15 Carica papaya HOM05D005986 ORTHO05D007467 6.5e-09 64.3 36 91.7
Ciclev10028467m.g Citrus clementina HOM05D005986 ORTHO05D007467 6.5e-09 64.3 36 91.7
Cc11_g14820 Coffea canephora HOM05D005986 ORTHO05D007467 8.4e-09 63.9 36 86.1
COL.COLO4_04222 Corchorus olitorius HOM05D005986 ORTHO05D007467 8.4e-09 63.9 36 86.1
COL.COLO4_06172 Corchorus olitorius HOM05D005986 ORTHO05D007467 8.4e-09 63.9 36 86.1
Hma1.2p1_1356F.1_g277880 Hydrangea macrophylla HOM05D005986 ORTHO05D007467 8.4e-09 63.9 36 86.1
Hma1.2p1_1356F.1_g277890 Hydrangea macrophylla HOM05D005986 ORTHO05D007467 8.4e-09 63.9 36 86.1
TWI36G0919 Tripterygium wilfordii HOM05D005986 ORTHO05D007467 8.4e-09 63.9 36 88.9
TAR371G0853 Trochodendron aralioides HOM05D005986 ORTHO05D007467 8.4e-09 63.9 36 86.1
unitig_747.g21105 Utricularia gibba HOM05D005986 ORTHO05D007467 8.4e-09 63.9 38 78.9
MSTRG.8073 Avicennia marina HOM05D005986 ORTHO05D007467 1.1e-08 63.5 36 88.9
CiPaw.05G096500 Carya illinoinensis HOM05D005986 ORTHO05D007467 1.1e-08 63.5 36 88.9
Manes.08G097800 Manihot esculenta HOM05D005986 ORTHO05D007467 1.1e-08 63.5 36 91.7
Thecc.01G233000 Theobroma cacao HOM05D005986 ORTHO05D007467 1.1e-08 63.5 36 86.1
Eucgr.B03577 Eucalyptus grandis HOM05D005986 ORTHO05D007467 1.4e-08 63.2 36 88.9
PSO017G0169 Papaver somniferum HOM05D005986 ORTHO05D007467 1.4e-08 63.2 36 86.1
PSO478G1012 Papaver somniferum HOM05D005986 ORTHO05D007467 1.4e-08 63.2 36 86.1
HanXRQChr17g0540591 Helianthus annuus HOM05D005986 ORTHO05D007467 1.9e-08 62.8 36 83.3
Potri.001G072400 Populus trichocarpa HOM05D005986 ORTHO05D007467 1.9e-08 62.8 36 88.9
THA.LOC104807194 Tarenaya hassleriana HOM05D005986 ORTHO05D007467 1.9e-08 62.8 36 88.9
Duzib147G0525 Durio zibethinus HOM05D005986 ORTHO05D007467 2.5e-08 62.4 36 83.3
ECA246G5024 Erigeron canadensis HOM05D005986 ORTHO05D007467 2.5e-08 62.4 36 80.6
ATR0582G342 Amborella trichopoda HOM05D005986 ORTHO05D007467 3.2e-08 62.0 36 83.3
Gohir.D12G085100 Gossypium hirsutum HOM05D005986 ORTHO05D007467 3.2e-08 62.0 36 83.3
Gorai.008G095500 Gossypium raimondii HOM05D005986 ORTHO05D007467 3.2e-08 62.0 36 83.3
AL8G19850 Arabidopsis lyrata HOM05D005986 ORTHO05D007467 4.2e-08 61.6 36 83.3
Gohir.A12G086500 Gossypium hirsutum HOM05D005986 ORTHO05D007467 4.2e-08 61.6 36 80.6
SGA_v2.0_scaffold258G45750 Striga asiatica HOM05D005986 ORTHO05D007467 4.2e-08 61.6 36 83.3
CANSAT56G1851 Cannabis sativa HOM05D005986 ORTHO05D007467 5.5e-08 61.2 35 88.6
ClCG10G013170 Citrullus lanatus HOM05D005986 ORTHO05D007467 5.5e-08 61.2 36 86.1
MELO3C026759.2 Cucumis melo HOM05D005986 ORTHO05D007467 5.5e-08 61.2 36 86.1
CsaV3_3G043440 Cucumis sativus L. HOM05D005986 ORTHO05D007467 5.5e-08 61.2 36 86.1
Migut.H01176 Erythranthe guttata HOM05D005986 ORTHO05D007467 5.5e-08 61.2 35 88.6
HPP92_001278 Vanilla planifolia HOM05D005986 ORTHO05D007467 5.5e-08 61.2 36 83.3
Atru.chr12.1489 Acer truncatum HOM05D005986 ORTHO05D007467 1.2e-07 60.1 36 86.1
FAN12G1445 Fragaria x ananassa HOM05D005986 ORTHO05D007467 1.2e-07 60.1 38 76.3
MD13G1135500 Malus domestica HOM05D005986 ORTHO05D007467 1.2e-07 60.1 36 83.3
Potri.003G158400 Populus trichocarpa HOM05D005986 ORTHO05D007467 1.2e-07 60.1 36 86.1
Sabra01G0051000 Salix brachista HOM05D005986 ORTHO05D007467 1.2e-07 60.1 36 86.1
Sabra03G0114800 Salix brachista HOM05D005986 ORTHO05D007467 1.2e-07 60.1 36 86.1
Oeu056144.2 Olea europaea HOM05D005986 ORTHO05D007467 1.6e-07 59.7 36 80.6
FAN07G2431 Fragaria x ananassa HOM05D005986 ORTHO05D007467 2.1e-07 59.3 38 76.3
Ca_22545_v3 Cicer arietinum L. HOM05D005986 ORTHO05D007467 2.7e-07 58.9 36 86.1
Lj4g0000342 Lotus japonicus HOM05D005986 ORTHO05D007467 3.5e-07 58.5 36 83.3
Aqoxy1G00505 Aquilegia oxysepala HOM05D005986 ORTHO05D007467 4.6e-07 58.2 36 77.8
CDE06G1414 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 4.6e-07 58.2 36 75.0
HanXRQChr06g0175331 Helianthus annuus HOM05D005986 ORTHO05D007467 4.6e-07 58.2 36 69.4
Os04g0405600 Oryza sativa ssp. japonica HOM05D005986 ORTHO05D007467 4.6e-07 58.2 36 75.0
Prupe.1G209800 Prunus persica HOM05D005986 ORTHO05D007467 4.6e-07 58.2 36 77.8
FvH4_4g21940 Fragaria vesca HOM05D005986 ORTHO05D007467 6.0e-07 57.8 36 77.8
Lalb_Chr16g0391881 Lupinus albus HOM05D005986 ORTHO05D007467 6.0e-07 57.8 36 80.6
CDE02G3075 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 7.9e-07 57.4 36 75.0
Lsat_1_v5_gn_3_33381 Lactuca sativa HOM05D005986 ORTHO05D007467 7.9e-07 57.4 36 72.2
Phvul.003G273800 Phaseolus vulgaris HOM05D005986 ORTHO05D007467 7.9e-07 57.4 36 77.8
SEGI_07632 Sequoiadendron giganteum HOM05D005986 ORTHO05D007467 7.9e-07 57.4 36 77.8
Gohir.D09G002900 Gossypium hirsutum HOM05D005986 ORTHO05D007467 1.0e-06 57.0 39 74.4
Sed0000271 Sechium edule HOM05D005986 ORTHO05D007467 1.0e-06 57.0 36 80.6
Solyc01g008070.3 Solanum lycopersicum HOM05D005986 ORTHO05D007467 1.0e-06 57.0 36 75.0
Sopen01g003630 Solanum pennellii HOM05D005986 ORTHO05D007467 1.0e-06 57.0 36 75.0
arahy.Tifrunner.gnm1.ann1.7WS5BD Arachis hypogaea HOM05D005986 ORTHO05D007467 1.3e-06 56.6 36 77.8
arahy.Tifrunner.gnm1.ann1.946FET Arachis hypogaea HOM05D005986 ORTHO05D007467 1.3e-06 56.6 36 77.8
Glyma.08G265400 Glycine max HOM05D005986 ORTHO05D007467 1.3e-06 56.6 36 77.8
Peaxi162Scf00097g01214 Petunia axillaris HOM05D005986 ORTHO05D007467 1.3e-06 56.6 36 77.8
VMungo0251G3786 Vigna mungo HOM05D005986 ORTHO05D007467 1.3e-06 56.6 36 77.8
DCAR_006993 Daucus carota HOM05D005986 ORTHO05D007467 1.8e-06 56.2 36 77.8
RcHm_v2.0_Chr4g0428161 Rosa chinensis HOM05D005986 ORTHO05D007467 1.8e-06 56.2 36 72.2
PGSC0003DMG401016404 Solanum tuberosum HOM05D005986 ORTHO05D007467 1.8e-06 56.2 36 75.0
TPR.G6140 Trifolium pratense HOM05D005986 ORTHO05D007467 1.8e-06 56.2 36 80.6
Gohir.A09G003100 Gossypium hirsutum HOM05D005986 ORTHO05D007467 2.3e-06 55.8 36 77.8
Gorai.006G003600 Gossypium raimondii HOM05D005986 ORTHO05D007467 2.3e-06 55.8 36 77.8
MD16G1131100 Malus domestica HOM05D005986 ORTHO05D007467 2.3e-06 55.8 36 72.2
Zm00001eb084350 Zea mays HOM05D005986 ORTHO05D007467 3.9e-06 55.1 36 72.2
CAN.G282.72 Capsicum annuum HOM05D005986 ORTHO05D007467 5.1e-06 54.7 36 72.2
Nitab4.5_0000069g0470 Nicotiana tabacum HOM05D005986 ORTHO05D007467 6.7e-06 54.3 36 72.2


User provided reference genes

Program Settings