Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 1.2e-124 449.9 230 100.0
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 8.5e-99 364.0 231 80.5
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 1.1e-93 347.1 231 77.1
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 4.7e-89 331.6 232 74.1
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 3.0e-88 328.9 231 71.4
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 8.8e-88 327.4 231 72.7
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 1.3e-86 323.6 231 70.6
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 7.7e-84 314.3 224 76.3
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.3e-83 313.5 281 64.4
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 1.7e-83 313.2 232 69.8
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 6.5e-83 311.2 230 67.0
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 1.9e-82 309.7 234 68.8
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 4.2e-82 308.5 232 69.0
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 4.2e-82 308.5 231 67.5
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 7.2e-82 307.8 231 67.1
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 1.2e-81 307.0 231 67.1
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 2.7e-81 305.8 231 67.5
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.7e-81 305.8 231 68.0
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 3.6e-81 305.4 231 68.4
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 4.7e-81 305.1 230 66.5
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 1.0e-80 303.9 230 65.7
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 1.0e-80 303.9 231 67.5
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 2.3e-80 302.8 231 71.4
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 4.0e-80 302.0 231 67.1
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 5.2e-80 301.6 231 68.8
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 5.2e-80 301.6 231 68.8
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 6.7e-80 301.2 230 65.2
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 1.2e-79 300.4 233 67.4
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 2.0e-79 299.7 230 67.0
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 2.6e-79 299.3 231 65.8
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 7.5e-79 297.7 230 67.0
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 7.5e-79 297.7 230 67.0
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 2.2e-78 296.2 233 66.5
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 2.2e-78 296.2 231 67.1
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 3.7e-78 295.4 232 67.2
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 4.8e-78 295.0 231 66.2
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 6.3e-78 294.7 227 66.1
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 1.4e-77 293.5 232 66.4
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 2.4e-77 292.7 232 66.8
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 4.1e-77 292.0 231 68.0
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 4.1e-77 292.0 225 68.0
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 5.3e-77 291.6 230 64.3
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 5.3e-77 291.6 227 67.8
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 7.0e-77 291.2 230 69.1
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 1.2e-76 290.4 231 66.2
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 1.6e-76 290.0 234 65.4
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 1.6e-76 290.0 231 65.4
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 4.5e-76 288.5 230 67.8
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 7.7e-76 287.7 232 66.4
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 1.7e-75 286.6 224 65.2
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 5.0e-75 285.0 226 65.5
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 1.1e-74 283.9 230 63.9
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.5e-74 283.5 230 67.4
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 1.5e-74 283.5 230 63.9
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 1.9e-74 283.1 224 64.7
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 2.5e-74 282.7 230 63.0
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 4.2e-74 282.0 232 64.7
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 9.4e-74 280.8 230 64.3
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 9.4e-74 280.8 234 62.8
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 2.7e-73 279.3 242 62.4
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 6.1e-73 278.1 223 63.2
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 1.4e-72 276.9 230 63.0
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 1.8e-72 276.6 230 61.3
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 4.0e-72 275.4 230 61.3
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 6.8e-72 274.6 230 60.9
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 2.6e-71 272.7 223 66.8
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 2.6e-71 272.7 231 61.5
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 1.3e-70 270.4 230 62.2
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 1.3e-70 270.4 224 63.8
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 1.3e-70 270.4 230 61.3
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 4.8e-70 268.5 223 64.1
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 8.3e-70 267.7 235 60.4
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 3.1e-69 265.8 223 61.4
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 4.1e-69 265.4 223 65.0
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 1.2e-68 263.8 223 61.9
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 1.6e-68 263.5 231 59.3
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 2.0e-68 263.1 230 58.7
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 1.7e-67 260.0 211 63.0
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 3.8e-67 258.8 216 62.5
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 2.5e-66 256.1 229 59.8
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.2e-65 253.8 206 68.0
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.8e-65 252.7 236 59.3
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 3.6e-65 252.3 237 57.8
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 4.7e-65 251.9 166 81.3
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 6.1e-65 251.5 230 57.8
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 2.3e-64 249.6 229 58.1
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 2.3e-64 249.6 230 57.4
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 1.2e-63 247.3 252 58.3
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 1.2e-63 247.3 224 58.5
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 1.7e-62 243.4 230 54.3
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 1.8e-61 240.0 230 53.5
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 9.2e-61 237.7 165 75.2
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 1.2e-60 237.3 232 55.2
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 1.5e-58 230.3 230 53.5
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 7.3e-58 228.0 223 57.0
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 1.0e-56 224.2 256 50.0
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.0e-56 224.2 223 54.7
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 1.5e-55 220.3 233 49.4
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 4.9e-54 215.3 230 52.2
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 4.9e-54 215.3 230 51.3
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 5.4e-53 211.8 237 48.5
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.2e-52 210.7 231 54.5
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 1.2e-52 210.7 211 53.6
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 3.5e-52 209.1 235 47.2
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 6.0e-52 208.4 224 51.8
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 1.4e-48 197.2 161 62.7
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 1.8e-48 196.8 223 45.7
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 3.1e-48 196.1 164 64.6
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 9.2e-45 184.5 217 48.4
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-33 145.2 262 34.0
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 8.9e-32 141.4 97 71.1
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 2.6e-31 139.8 104 69.2
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 3.4e-31 139.4 144 58.3
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.2e-30 136.7 192 47.4
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 1.9e-29 133.7 74 91.9
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 4.6e-28 129.0 120 61.7
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 1.3e-27 127.5 224 34.8
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 5.1e-27 125.6 105 61.9
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 4.3e-26 122.5 89 65.2
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 9.9e-23 111.3 74 75.7
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 1.3e-22 110.9 274 29.6
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 9.3e-21 104.8 167 44.3
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 9.3e-21 104.8 167 44.3
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 9.3e-21 104.8 196 36.2
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 2.3e-19 100.1 89 56.2
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 3.0e-19 99.8 89 55.1
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 5.1e-19 99.0 63 74.6
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 6.6e-19 98.6 89 55.1
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 9.6e-18 94.7 89 53.9
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 4.0e-16 89.4 92 62.0
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.4e-13 80.9 73 61.6
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 1.9e-13 80.5 53 77.4
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 1.2e-12 77.8 77 49.4
Sc08g0005650 Simmondsia chinensis HOM05D005809 ORTHO05D007259 3.8e-06 56.2 50 58.0


User provided reference genes

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