Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.3e-140 502.7 342 100.0
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.3e-140 502.7 342 100.0
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 7.4e-99 364.8 335 76.4
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 2.6e-96 356.3 317 76.0
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 1.3e-95 354.0 339 73.5
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.7e-95 353.6 331 70.7
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 2.9e-95 352.8 339 73.5
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 1.4e-94 350.5 321 68.8
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 3.2e-94 349.4 321 75.4
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.2e-93 347.4 334 65.9
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 4.6e-93 345.5 323 74.0
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 7.9e-93 344.7 340 70.6
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 7.9e-93 344.7 330 78.2
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 3.9e-92 342.4 335 72.2
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 1.5e-91 340.5 329 71.7
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.7e-90 337.0 321 74.1
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.7e-90 337.0 332 73.5
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 8.2e-90 334.7 333 76.3
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 1.1e-89 334.3 342 72.8
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.4e-89 333.2 342 71.6
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 2.6e-88 329.7 320 73.8
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 5.9e-88 328.6 342 69.6
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 5.9e-88 328.6 342 71.9
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.0e-87 327.8 321 68.8
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 1.4e-86 323.9 314 67.8
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 1.9e-86 323.6 332 66.9
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 9.4e-86 321.2 330 65.2
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 1.2e-85 320.9 318 67.0
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.1e-85 320.1 338 71.0
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 3.6e-85 319.3 339 72.3
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.9e-85 318.2 342 69.3
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 1.0e-84 317.8 321 67.0
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 3.9e-84 315.8 342 69.6
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 5.1e-84 315.5 329 69.6
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 5.1e-84 315.5 344 63.4
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 1.5e-83 313.9 339 65.8
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 2.6e-83 313.2 339 64.3
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 3.3e-83 312.8 342 66.7
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.7e-83 312.0 342 68.7
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 2.2e-82 310.1 325 70.2
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 2.8e-82 309.7 315 72.7
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 4.8e-82 308.9 319 67.7
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.3e-82 308.5 342 68.1
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.3e-82 308.5 342 68.1
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 6.3e-82 308.5 342 67.8
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 6.3e-82 308.5 329 71.1
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 1.4e-81 307.4 317 71.3
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.4e-81 307.4 342 68.4
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 2.4e-81 306.6 342 66.7
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 9.1e-81 304.7 342 69.0
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.2e-80 304.3 342 65.8
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 1.2e-80 304.3 366 54.6
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 5.9e-80 302.0 320 64.1
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 5.9e-80 302.0 314 64.0
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.3e-79 300.8 338 68.0
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 2.9e-79 299.7 333 69.1
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 8.5e-79 298.1 324 62.3
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 8.5e-79 298.1 324 62.3
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 1.4e-78 297.4 342 65.5
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 1.4e-78 297.4 342 67.8
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 3.2e-78 296.2 342 67.5
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 4.2e-78 295.8 334 66.2
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 2.7e-77 293.1 303 66.0
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 2.7e-77 293.1 325 68.0
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 3.6e-77 292.7 323 62.5
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 3.6e-77 292.7 341 61.0
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 3.6e-77 292.7 327 66.4
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 4.7e-77 292.4 329 66.0
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 4.7e-77 292.4 336 66.7
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 8.0e-77 291.6 340 67.1
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-76 290.8 314 67.5
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-76 290.8 361 58.7
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 1.8e-76 290.4 327 59.3
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 5.2e-76 288.9 318 61.6
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 5.2e-76 288.9 335 63.6
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 6.7e-76 288.5 314 66.9
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 6.7e-76 288.5 314 66.9
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 6.7e-76 288.5 327 60.9
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 1.5e-75 287.3 319 61.1
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.5e-75 287.3 332 67.5
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 2.0e-75 287.0 332 59.3
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 2.0e-75 287.0 329 65.3
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 4.4e-75 285.8 332 59.3
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 4.4e-75 285.8 332 64.5
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 5.7e-75 285.4 333 67.0
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 5.7e-75 285.4 244 73.8
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 9.7e-75 284.6 332 59.3
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 1.7e-74 283.9 328 63.1
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.4e-73 280.8 319 59.9
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 1.8e-73 280.4 339 64.9
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 7.0e-73 278.5 328 65.9
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 2.6e-72 276.6 332 58.1
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-72 276.6 332 58.1
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.6e-72 276.6 292 72.6
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 3.5e-72 276.2 319 65.2
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 3.5e-72 276.2 349 56.4
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.7e-71 273.9 340 65.0
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.9e-70 270.4 309 68.6
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 7.2e-70 268.5 333 55.9
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 1.0e-68 264.6 310 65.2
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 1.4e-68 264.2 317 68.1
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 5.2e-68 262.3 206 72.3
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 8.8e-68 261.5 296 64.9
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.6e-67 260.0 311 67.8
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 5.7e-67 258.8 333 63.7
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.8e-65 253.8 317 65.3
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 4.1e-65 252.7 316 66.8
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 1.2e-64 251.1 306 58.8
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.0e-64 250.4 315 66.0
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.7e-63 247.3 318 57.9
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 1.5e-62 244.2 328 56.4
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 1.9e-62 243.8 222 58.6
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 3.0e-60 236.5 220 56.8
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 4.0e-60 236.1 325 57.5
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.2e-59 234.6 165 75.8
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 6.3e-58 228.8 319 54.9
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 2.7e-56 223.4 204 65.2
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.0e-55 221.5 308 57.8
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 6.6e-55 218.8 175 73.1
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.1e-54 218.0 297 57.9
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 7.2e-54 215.3 206 64.6
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 4.7e-53 212.6 177 60.5
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 6.1e-53 212.2 177 59.3
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-50 203.0 177 65.5
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.7e-48 196.8 144 76.4
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 7.8e-48 195.3 297 54.2
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 4.3e-46 189.5 139 69.1
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 1.8e-44 184.1 313 49.8
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 3.0e-44 183.3 333 47.4
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 4.0e-44 183.0 332 47.0
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 1.2e-43 181.4 308 54.2
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 3.4e-43 179.9 174 55.7
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.3e-42 177.9 181 56.9
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 8.3e-42 175.3 174 62.1
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.4e-41 173.7 121 72.7
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.2e-41 173.3 207 78.7
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 7.0e-41 172.2 157 56.7
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 7.0e-41 172.2 151 64.9
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 2.0e-40 170.6 323 45.8
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 4.6e-40 169.5 209 47.8
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 7.8e-40 168.7 113 72.6
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 3.0e-39 166.8 146 70.5
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 2.5e-38 163.7 212 71.2
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 7.3e-38 162.2 174 51.7
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 2.1e-37 160.6 141 59.6
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 4.7e-37 159.5 308 49.4
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 4.0e-36 156.4 140 73.6
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 3.4e-35 153.3 159 56.0
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 6.6e-31 139.0 183 73.2
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 5.6e-30 136.0 165 53.9
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.7e-24 117.1 88 70.5
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.1e-23 112.8 96 66.7
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.1e-23 112.8 96 66.7
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.6e-21 107.8 81 70.4
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.4e-20 104.8 146 44.5
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 3.4e-19 100.1 329 35.0
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.4e-18 95.5 94 58.5
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 1.6e-16 91.3 67 71.6
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.6e-16 91.3 101 57.4
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 6.6e-15 85.9 131 38.2
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 5.8e-11 72.8 41 75.6
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.7e-10 71.2 61 59.0
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 2.2e-10 70.9 49 61.2
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 2.2e-10 70.9 49 61.2
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.2e-10 70.9 159 42.1
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.8e-10 70.1 62 61.3
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.2e-08 65.1 97 43.3
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 8.7e-07 58.9 83 45.8


User provided reference genes

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