Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 5.5e-210 734.2 407 100.0
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.6e-209 732.6 407 99.5
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 2.8e-153 545.8 359 75.2
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 7.1e-141 504.6 359 67.4
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 2.7e-140 502.7 359 69.9
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 5.6e-138 495.0 359 67.4
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 2.8e-137 492.7 359 67.1
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 3.7e-137 492.3 361 68.4
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 8.1e-137 491.1 359 67.4
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.4e-136 490.3 365 67.9
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 2.4e-136 489.6 360 68.3
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 4.5e-135 485.3 360 65.6
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.7e-134 483.4 359 68.0
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.7e-134 483.4 379 64.4
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 3.0e-131 472.6 419 58.9
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 6.7e-131 471.5 359 63.8
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.9e-130 469.9 359 63.2
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 2.5e-130 469.5 361 63.7
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 4.8e-129 465.3 359 64.3
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 1.1e-128 464.2 361 65.7
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 1.8e-128 463.4 331 65.9
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.0e-126 457.6 359 64.1
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.2e-126 456.4 359 63.0
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.9e-126 456.1 361 62.9
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 3.2e-125 452.6 359 61.0
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 7.1e-125 451.4 365 62.2
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 7.1e-125 451.4 362 63.3
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.1e-124 449.9 420 58.6
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 6.0e-124 448.4 362 62.2
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.3e-123 447.2 337 65.3
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.7e-122 441.8 361 60.9
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.6e-121 440.3 368 60.6
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 4.8e-121 438.7 362 61.0
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.8e-120 436.8 361 61.5
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 2.9e-118 429.5 359 59.9
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 1.2e-116 424.1 362 59.9
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 7.9e-116 421.4 361 59.6
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 7.4e-114 414.8 359 56.3
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 8.2e-113 411.4 284 72.5
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 1.4e-112 410.6 257 82.5
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 5.3e-112 408.7 384 53.6
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 9.1e-112 407.9 359 59.1
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.9e-110 402.9 345 59.7
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 3.8e-110 402.5 353 59.5
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 7.2e-109 398.3 356 53.9
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.6e-108 397.1 360 52.2
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.8e-107 393.7 368 53.3
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.8e-107 393.7 360 57.5
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.0e-107 392.9 424 50.2
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 1.1e-106 391.0 458 49.1
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 3.3e-106 389.4 342 58.8
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.2e-105 386.7 367 52.3
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.2e-105 386.7 362 56.1
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 9.1e-104 381.3 356 56.7
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.5e-103 380.6 358 52.8
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 5.0e-102 375.6 370 51.6
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 4.2e-101 372.5 355 51.3
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.2e-100 370.9 360 51.1
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 3.0e-99 366.3 380 53.2
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.0e-99 366.3 360 54.4
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.2e-97 360.1 213 83.6
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 3.7e-97 359.4 257 73.5
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 6.3e-97 358.6 295 60.0
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.1e-96 356.3 340 51.5
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 7.0e-96 355.1 381 52.2
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 5.0e-94 349.0 345 49.9
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 3.6e-92 342.8 368 51.1
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 5.2e-91 339.0 341 50.7
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 8.8e-91 338.2 342 49.4
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 8.8e-91 338.2 342 49.4
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 2.6e-90 336.7 368 51.1
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.7e-89 334.0 338 49.1
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 5.5e-85 318.9 266 62.4
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 7.2e-85 318.5 356 45.5
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.4e-80 304.3 364 46.2
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 7.0e-80 302.0 385 43.9
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 3.5e-79 299.7 256 59.0
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 5.9e-79 298.9 361 46.0
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 5.0e-78 295.8 289 56.7
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 6.6e-78 295.4 340 49.7
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.5e-77 294.3 255 59.6
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 1.2e-74 284.6 257 58.4
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.5e-74 284.3 242 63.6
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 7.5e-74 282.0 215 65.6
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 8.6e-70 268.5 260 55.0
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 9.5e-69 265.0 264 49.2
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 3.6e-68 263.1 270 51.5
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.8e-67 260.8 239 57.7
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 5.2e-67 259.2 349 43.6
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.2e-65 253.8 195 63.6
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.1e-64 249.6 216 62.5
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 9.2e-64 248.4 216 62.0
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.2e-63 248.1 232 58.2
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.6e-63 247.7 264 47.0
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 2.0e-63 247.3 212 58.5
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.0e-62 245.0 227 61.7
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 3.6e-60 236.5 243 53.9
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 5.2e-59 232.6 229 56.8
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 3.7e-57 226.5 219 59.8
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 3.5e-55 219.9 268 47.8
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.0e-54 216.9 216 57.4
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 8.6e-54 215.3 195 60.5
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 1.5e-53 214.5 216 56.0
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 9.5e-53 211.8 206 55.3
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 2.8e-52 210.3 184 57.6
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.2e-50 204.9 225 52.0
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.0e-50 204.1 225 51.6
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 5.8e-50 202.6 226 52.7
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.7e-49 201.1 225 50.7
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 2.2e-49 200.7 225 51.6
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.4e-48 198.0 214 54.2
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.9e-48 197.6 225 50.2
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.9e-48 197.6 234 49.1
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.4e-48 197.2 225 51.1
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 1.2e-47 194.9 225 49.8
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.3e-46 190.7 141 67.4
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 2.3e-46 190.7 225 49.3
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.3e-46 190.7 180 56.1
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 3.0e-46 190.3 268 44.0
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.9e-46 189.9 189 56.1
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 5.1e-46 189.5 188 55.3
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 8.6e-46 188.7 179 59.2
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.1e-45 188.3 188 55.3
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 3.3e-45 186.8 141 66.0
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 7.3e-45 185.7 128 74.2
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 6.2e-44 182.6 143 62.2
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.8e-43 181.0 193 54.4
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 5.2e-43 179.5 127 69.3
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 5.2e-43 179.5 141 66.0
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 4.4e-42 176.4 184 53.3
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.9e-40 171.0 184 51.6
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 8.1e-36 155.6 203 39.9
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 3.8e-33 146.7 186 44.6
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 2.4e-32 144.1 216 38.0
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 1.6e-31 141.4 72 80.6
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.3e-30 138.3 126 56.3
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 5.6e-29 132.9 159 50.9
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.1e-28 131.0 136 49.3
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 2.4e-27 127.5 63 79.4
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.4e-24 117.5 154 39.6
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 7.9e-23 112.5 65 84.6
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 2.2e-17 94.4 124 44.4
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 3.2e-16 90.5 109 45.9
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 2.8e-12 77.4 137 35.8
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 6.2e-12 76.3 178 34.8
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 4.1e-11 73.6 67 58.2
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 4.1e-11 73.6 77 48.1
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.5e-10 71.6 77 46.8
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 1.7e-09 68.2 128 34.4
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 5.0e-09 66.6 83 44.6


User provided reference genes

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