Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 4.9e-185 651.0 327 100.0
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.9e-184 649.0 327 99.7
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.6e-149 532.3 324 81.8
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 5.3e-147 524.6 327 80.7
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 9.1e-147 523.9 324 80.6
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 6.1e-143 511.1 324 78.7
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.7e-140 503.1 324 77.2
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.4e-139 500.0 326 75.5
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 7.0e-139 497.7 326 75.5
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 4.5e-138 495.0 326 74.8
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 6.5e-137 491.1 323 74.9
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.5e-136 490.0 324 75.0
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.9e-136 489.6 326 73.3
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 7.2e-136 487.6 327 74.9
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 1.2e-135 486.9 325 73.5
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 1.6e-135 486.5 324 75.6
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.4e-134 483.4 319 74.0
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 2.3e-134 482.6 323 75.9
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.3e-134 482.6 326 74.2
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 5.2e-134 481.5 328 75.6
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 5.2e-134 481.5 320 75.6
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 2.0e-133 479.6 327 73.1
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 2.6e-133 479.2 320 75.9
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 4.4e-133 478.4 324 73.8
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 5.7e-133 478.0 333 72.7
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 7.5e-133 477.6 324 73.5
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 9.8e-133 477.2 320 74.7
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 9.8e-133 477.2 320 75.0
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 9.8e-133 477.2 361 68.4
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.3e-132 476.9 320 74.7
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 2.2e-132 476.1 326 72.7
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 2.2e-132 476.1 327 71.9
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 3.7e-132 475.3 322 73.6
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.8e-132 474.9 320 74.7
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 6.3e-132 474.6 319 75.2
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.4e-131 473.4 326 72.4
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.8e-131 473.0 325 74.8
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.1e-131 471.9 320 74.7
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 4.1e-131 471.9 326 70.9
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 5.4e-131 471.5 327 73.4
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 5.4e-131 471.5 325 74.5
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 2.7e-130 469.2 328 73.2
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 5.9e-130 468.0 326 72.7
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 5.9e-130 468.0 327 71.3
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.7e-129 466.5 325 74.5
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 2.3e-129 466.1 322 73.6
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 2.9e-129 465.7 323 73.1
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 5.0e-129 464.9 321 73.8
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 8.6e-129 464.2 327 71.3
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.5e-128 462.6 379 63.1
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 2.5e-128 462.6 324 71.3
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.3e-128 462.2 321 74.1
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 5.5e-128 461.5 319 69.3
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 7.2e-128 461.1 327 70.0
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 2.1e-127 459.5 320 70.3
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 2.1e-127 459.5 334 69.2
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 3.6e-127 458.8 324 69.8
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 4.7e-127 458.4 324 69.8
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 6.1e-127 458.0 327 69.7
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 6.1e-127 458.0 315 72.1
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 3.4e-125 452.2 325 70.2
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 3.4e-125 452.2 320 69.4
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 4.4e-125 451.8 321 70.1
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 9.8e-125 450.7 319 71.2
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 1.3e-124 450.3 328 71.6
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 4.9e-124 448.4 321 70.7
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.8e-123 446.4 321 70.4
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 2.4e-123 446.0 320 70.6
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 4.1e-123 445.3 327 67.6
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 7.0e-123 444.5 327 69.1
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 9.2e-123 444.1 321 68.2
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 2.7e-122 442.6 324 67.9
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 3.5e-122 442.2 327 68.8
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 5.9e-122 441.4 327 69.1
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 7.8e-122 441.0 327 68.5
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.3e-121 440.3 324 67.9
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.3e-121 440.3 323 68.4
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 1.3e-121 440.3 325 67.1
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 5.0e-121 438.3 322 69.3
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.5e-120 436.8 327 68.8
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 2.5e-120 436.0 322 67.4
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 3.3e-120 435.6 339 66.7
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 5.6e-120 434.9 316 67.7
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 9.5e-120 434.1 345 65.8
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 1.2e-119 433.7 349 64.8
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 3.6e-119 432.2 313 70.0
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 6.1e-119 431.4 332 68.1
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 8.0e-119 431.0 285 74.7
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 8.0e-119 431.0 287 74.2
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.0e-118 430.6 319 67.7
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 4.4e-117 425.2 320 66.6
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 2.2e-116 422.9 321 66.7
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.0e-113 414.1 284 71.8
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.9e-112 409.8 322 64.0
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 3.6e-111 405.6 260 77.7
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 8.9e-110 401.0 281 70.8
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 7.5e-109 397.9 303 66.7
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 9.2e-107 391.0 246 78.5
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 6.0e-106 388.3 324 62.0
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 3.4e-101 372.5 241 78.4
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 7.3e-96 354.8 239 72.8
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 9.6e-96 354.4 230 77.8
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.8e-95 352.8 203 85.7
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 1.1e-91 340.9 316 56.3
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 1.1e-91 340.9 238 71.0
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 1.4e-91 340.5 324 52.8
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 2.5e-88 329.7 238 71.4
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.9e-83 313.5 246 64.6
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 3.9e-81 305.8 238 64.3
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 4.3e-80 302.4 320 51.9
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.6e-77 293.1 241 67.6
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 4.5e-77 292.4 238 65.5
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 1.5e-69 267.3 195 68.7
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 4.6e-66 255.8 197 66.0
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.3e-65 254.2 309 45.3
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 2.7e-58 229.9 183 65.0
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 2.0e-53 213.8 131 78.6
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.9e-51 207.2 322 42.5
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 2.8e-47 193.4 325 39.7
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 1.8e-41 174.1 117 75.2
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 3.7e-39 166.4 325 37.8
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 3.5e-37 159.8 111 69.4
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 3.5e-37 159.8 111 69.4
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 3.5e-37 159.8 111 69.4
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 5.9e-37 159.1 130 60.8
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-35 154.5 107 73.8
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 2.5e-35 153.7 111 69.4
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 6.7e-33 145.6 125 56.0
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 8.5e-28 128.6 90 68.9
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.5e-27 127.1 98 63.3
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.6e-26 124.4 81 76.5
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 2.2e-23 114.0 81 75.3
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-20 104.8 81 64.2
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.7e-20 104.4 85 62.4
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 9.8e-16 88.6 53 77.4
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 4.1e-14 83.2 57 64.9
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-13 80.1 66 62.1
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-13 80.1 66 62.1
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 8.3e-07 58.9 43 65.1
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 2.4e-06 57.4 47 63.8


User provided reference genes

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