Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 0.0e+00 1543.9 822 100.0
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 6.1e-309 1063.9 750 79.1
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 8.3e-306 1053.5 760 77.1
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.4e-305 1052.0 758 76.1
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.2e-299 1033.1 751 76.4
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 4.6e-296 1021.1 804 70.9
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.6e-293 1011.5 755 72.6
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 8.1e-293 1010.4 796 70.1
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.0e-279 965.3 679 78.9
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 8.1e-261 904.0 777 67.3
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 3.1e-260 902.1 777 67.3
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 7.4e-246 854.4 754 63.8
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.8e-245 852.4 688 69.3
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 3.6e-240 835.5 762 64.3
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 7.4e-238 827.8 762 63.5
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.7e-234 816.6 754 61.8
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.4e-233 813.5 752 62.1
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.5e-230 803.5 752 61.0
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 2.6e-230 802.7 766 62.7
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 7.4e-230 801.2 751 61.1
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.2e-229 799.7 760 61.8
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 8.2e-229 797.7 808 59.4
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 1.5e-227 793.5 752 61.7
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.8e-226 788.9 751 60.6
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 4.2e-225 785.4 751 62.7
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 5.2e-223 778.5 762 60.6
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 4.4e-222 775.4 764 58.8
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 4.4e-222 775.4 752 60.1
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.4e-220 770.4 762 61.2
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 3.2e-217 759.2 762 60.9
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 6.1e-216 755.0 752 59.6
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 6.1e-216 755.0 754 60.7
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.8e-215 753.4 763 58.5
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.5e-214 750.4 752 59.3
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.6e-214 749.6 752 57.7
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 9.7e-214 747.7 751 58.7
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 4.8e-213 745.3 785 57.6
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 5.3e-212 741.9 761 57.2
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 7.0e-212 741.5 762 58.5
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 2.2e-210 736.5 785 57.1
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 4.2e-209 732.3 719 58.6
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.2e-209 731.5 752 58.6
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.6e-208 730.3 777 55.6
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 4.7e-208 728.8 765 56.3
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 6.1e-208 728.4 758 56.5
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 1.4e-207 727.2 784 56.0
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.0e-206 723.4 752 58.2
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 2.8e-205 719.5 754 55.6
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 3.7e-205 719.2 757 56.3
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 5.9e-203 711.8 776 56.4
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 3.8e-202 709.1 760 56.3
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.3e-201 706.1 752 57.6
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.2e-200 704.1 781 53.9
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.0e-199 701.0 760 57.6
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 1.4e-199 700.7 687 60.1
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 3.0e-199 699.5 721 56.9
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 6.8e-199 698.4 758 56.2
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 8.9e-199 698.0 738 58.1
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.2e-198 697.6 757 55.4
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 1.3e-197 694.1 798 55.4
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 5.4e-196 688.7 754 56.8
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 3.8e-194 682.6 769 54.2
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 9.5e-193 677.9 764 55.6
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 6.1e-192 675.2 727 53.9
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 9.8e-190 667.9 757 53.2
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.3e-189 667.5 753 55.4
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.9e-189 666.4 776 54.5
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 2.9e-189 666.4 769 53.1
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-188 664.5 764 55.1
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 3.2e-188 662.9 778 51.0
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.6e-187 660.6 748 56.4
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.7e-187 659.8 765 54.8
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 1.7e-186 657.1 767 55.9
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.9e-186 656.0 760 52.5
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 6.6e-186 655.2 762 54.5
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.9e-185 653.7 754 55.0
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 2.3e-183 646.7 762 53.0
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 5.2e-183 645.6 739 53.3
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 8.9e-183 644.8 597 59.6
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 1.5e-182 644.0 749 53.8
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 9.8e-182 641.3 700 56.4
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 8.3e-181 638.3 757 54.2
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 8.6e-178 628.2 750 50.3
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 2.1e-176 623.6 756 51.9
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.8e-176 623.2 760 51.8
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.1e-175 619.8 761 53.5
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 5.2e-175 619.0 749 53.0
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 8.9e-175 618.2 761 53.5
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 4.4e-174 615.9 690 56.7
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 8.3e-173 611.7 688 53.1
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-172 611.3 761 53.1
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 3.2e-172 609.8 716 53.8
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 6.0e-171 605.5 751 52.7
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 6.0e-171 605.5 716 52.7
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 9.5e-169 598.2 727 51.2
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.1e-168 597.0 758 49.9
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 8.9e-167 591.7 723 51.2
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 3.5e-163 579.7 737 50.2
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 6.0e-163 578.9 755 49.9
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 3.3e-161 573.2 749 50.6
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.2e-160 571.2 759 50.3
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.8e-160 570.1 538 60.0
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 4.7e-160 569.3 748 49.3
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 4.7e-160 569.3 755 49.5
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.8e-159 567.4 708 51.8
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.1e-155 553.9 752 49.9
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 2.0e-150 537.3 677 51.7
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 2.6e-150 537.0 683 49.9
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 1.3e-149 534.6 631 51.2
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 8.4e-149 531.9 631 51.5
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.8e-146 524.2 807 44.5
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.9e-140 504.2 716 47.5
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.9e-129 467.6 773 42.7
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.5e-129 467.2 625 52.0
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 2.0e-126 457.6 760 43.7
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 3.4e-126 456.8 647 49.6
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 1.1e-124 451.8 627 50.1
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.6e-123 448.0 626 50.8
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 1.6e-123 448.0 629 50.2
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 2.4e-119 434.1 751 40.7
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 9.1e-119 432.2 753 41.7
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.3e-117 428.3 755 41.3
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 6.5e-117 426.0 625 49.3
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 4.7e-115 419.9 665 46.6
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.5e-113 414.8 685 45.7
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 6.3e-112 409.5 512 50.2
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 1.1e-111 408.7 633 47.2
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 1.4e-111 408.3 633 47.6
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 7.7e-110 402.5 755 38.9
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.2e-109 401.0 597 46.9
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 3.8e-109 400.2 597 47.2
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.2e-107 395.2 596 47.1
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 1.0e-106 392.1 596 46.5
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 6.1e-99 366.3 375 57.6
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 1.2e-97 362.1 596 44.6
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 6.6e-85 319.7 327 58.4
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-79 302.4 277 63.2
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-79 302.4 277 63.2
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 2.5e-76 291.2 593 38.4
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.4e-71 275.4 420 43.6
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 3.5e-70 270.8 915 31.3
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 6.4e-64 250.0 296 53.0
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 4.6e-62 243.8 718 34.4
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 6.4e-56 223.4 826 30.1
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.1e-55 222.6 629 34.0
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 1.7e-48 198.7 678 32.6
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 9.3e-47 193.0 531 32.8
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 9.9e-41 172.9 235 42.6
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 4.3e-36 157.5 121 71.9
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.4e-34 152.5 127 66.9
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 2.4e-34 151.8 157 58.6
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.2e-33 149.4 164 54.3
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 1.1e-31 142.9 119 64.7
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 9.6e-28 129.8 117 56.4
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 9.3e-23 113.2 189 40.7
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 2.1e-22 112.1 207 39.6
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 6.0e-22 110.5 133 55.6
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 1.6e-19 102.4 164 41.5
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 5.3e-18 97.4 77 64.9
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 2.9e-16 91.7 196 36.2
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 1.4e-15 89.4 94 53.2
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 1.6e-14 85.9 91 54.9
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 6.1e-14 84.0 106 50.0
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 3.0e-13 81.6 478 26.6
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 6.7e-13 80.5 412 27.7
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 1.5e-12 79.3 190 36.8
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.5e-12 79.3 106 51.9
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 2.4e-10 72.0 74 56.8
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 6.9e-10 70.5 60 58.3
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 9.0e-10 70.1 203 33.0
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 9.0e-10 70.1 60 58.3
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 3.4e-09 68.2 95 42.1
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 1.3e-08 66.2 66 53.0
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 3.8e-08 64.7 163 38.0
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 3.8e-08 64.7 34 88.2
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 4.2e-07 61.2 47 68.1
CAN.G300.4 Capsicum annuum HOM05D000541 ORTHO05D000137 9.4e-07 60.1 81 46.9


User provided reference genes

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