Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045829 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D028406 3.5e-83 311.6 161 100.0
CSS0043025 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 7.6e-62 240.7 124 100.0
CSS0034707 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D004019 2.8e-40 169.1 125 71.2
vmacro08153 Vaccinium macrocarpon HOM05D000639 ORTHO05D004019 1.8e-39 166.4 122 69.7
Rhsim04G0222300 Rhododendron simsii HOM05D000639 ORTHO05D004019 1.0e-37 160.6 122 66.4
Actinidia14303 Actinidia chinensis HOM05D000639 ORTHO05D004019 3.8e-37 158.7 120 66.7
Hma1.2p1_0078F.1_g040530 Hydrangea macrophylla HOM05D000639 ORTHO05D004019 3.5e-35 152.1 145 58.6
Cfa015385 Carpinus fangiana HOM05D000639 ORTHO05D004019 3.0e-34 149.1 120 62.5
Oeu029702.2 Olea europaea HOM05D000639 ORTHO05D004019 3.9e-34 148.7 123 64.2
Actinidia01464 Actinidia chinensis HOM05D000639 ORTHO05D004019 1.1e-33 147.1 125 64.0
QL06p008928 Quercus lobata HOM05D000639 ORTHO05D004019 1.9e-33 146.4 121 62.0
Actinidia40256 Actinidia chinensis HOM05D000639 ORTHO05D004019 5.7e-33 144.8 125 62.4
Haze_01200 Corylus avellana HOM05D000639 ORTHO05D004019 7.4e-33 144.4 121 62.8
Cpa.g.sc16.172 Carica papaya HOM05D000639 ORTHO05D004019 2.8e-32 142.5 131 59.5
Dinv44380 Davidia involucrata HOM05D000639 ORTHO05D004019 6.3e-32 141.4 104 68.3
COL.COLO4_13868 Corchorus olitorius HOM05D000639 ORTHO05D004019 1.1e-31 140.6 117 63.2
EL10Ac3g06602 Beta vulgaris HOM05D000639 ORTHO05D004019 1.4e-31 140.2 119 59.7
Gorai.006G262700 Gossypium raimondii HOM05D000639 ORTHO05D004019 1.4e-31 140.2 122 59.0
Atru.chr4.2839 Acer truncatum HOM05D000639 ORTHO05D004019 1.8e-31 139.8 129 57.4
MD13G1168500 Malus domestica HOM05D000639 ORTHO05D004019 1.8e-31 139.8 119 58.0
Lj6C676T4 Lonicera japonica HOM05D000639 ORTHO05D004019 3.1e-31 139.0 123 58.5
Nn4g25839 Nelumbo nucifera HOM05D000639 ORTHO05D004019 6.9e-31 137.9 122 56.6
Gohir.D09G239900 Gossypium hirsutum HOM05D000639 ORTHO05D004019 2.0e-30 136.3 122 57.4
Duzib151G0063 Durio zibethinus HOM05D000639 ORTHO05D004019 3.4e-30 135.6 122 55.7
Thecc.04G284900 Theobroma cacao HOM05D000639 ORTHO05D004019 7.6e-30 134.4 124 58.9
Gohir.A09G239000 Gossypium hirsutum HOM05D000639 ORTHO05D004019 1.0e-29 134.0 122 55.7
Duzib212G0808 Durio zibethinus HOM05D000639 ORTHO05D004019 1.7e-29 133.3 122 56.6
Sopen03g027930 Solanum pennellii HOM05D000639 ORTHO05D028406 2.2e-29 132.9 122 57.4
CiPaw.02G082800 Carya illinoinensis HOM05D000639 ORTHO05D004019 2.9e-29 132.5 115 55.7
CANSAT78G0502 Cannabis sativa HOM05D000639 ORTHO05D004019 3.8e-29 132.1 122 55.7
Solyc12g099560.2 Solanum lycopersicum HOM05D000639 ORTHO05D004019 6.5e-29 131.3 122 55.7
Ciclev10004703m.g Citrus clementina HOM05D000639 ORTHO05D004019 8.5e-29 131.0 117 62.4
Dinv29742 Davidia involucrata HOM05D000714 ORTHO05D000544 8.5e-29 131.0 104 61.5
Potri.008G222700 Populus trichocarpa HOM05D000639 ORTHO05D004019 8.5e-29 131.0 130 56.2
Gohir.A09G062500 Gossypium hirsutum HOM05D000639 ORTHO05D004019 1.1e-28 130.6 111 59.5
Prupe.1G136600 Prunus persica HOM05D000639 ORTHO05D004019 1.1e-28 130.6 122 54.1
TAR362G0702 Trochodendron aralioides HOM05D000639 ORTHO05D004019 1.1e-28 130.6 125 56.8
MD16G1168900 Malus domestica HOM05D000639 ORTHO05D004019 4.2e-28 128.6 117 55.6
Gorai.011G190400 Gossypium raimondii HOM05D000639 ORTHO05D004019 5.5e-28 128.3 115 56.5
Potri.010G014600 Populus trichocarpa HOM05D000639 ORTHO05D004019 5.5e-28 128.3 130 53.8
Hma1.2p1_2670F.1_g326610 Hydrangea macrophylla HOM05D000639 ORTHO05D004019 7.2e-28 127.9 125 53.6
GSVIVG01017761001 Vitis vinifera HOM05D000639 ORTHO05D004019 1.6e-27 126.7 123 55.3
RcHm_v2.0_Chr4g0422261 Rosa chinensis HOM05D000639 ORTHO05D004019 2.1e-27 126.3 117 56.4
TWI73G0330 Tripterygium wilfordii HOM05D000639 ORTHO05D004019 2.1e-27 126.3 132 54.5
CAN.G449.33 Capsicum annuum HOM05D000639 ORTHO05D004019 3.6e-27 125.6 125 51.2
FAN17G3001 Fragaria x ananassa HOM05D000639 ORTHO05D004019 4.6e-27 125.2 117 60.7
TAR365G0782 Trochodendron aralioides HOM05D000639 ORTHO05D004019 6.1e-27 124.8 149 48.3
Gohir.D10G170500 Gossypium hirsutum HOM05D000639 ORTHO05D004019 7.9e-27 124.4 114 56.1
Gohir.A10G164200 Gossypium hirsutum HOM05D000639 ORTHO05D004019 6.7e-26 121.3 114 55.3
FAN12G1449 Fragaria x ananassa HOM05D000639 ORTHO05D004019 8.8e-26 120.9 117 59.0
PGSC0003DMG400004710 Solanum tuberosum HOM05D000639 ORTHO05D004019 8.8e-26 120.9 120 53.3
SalBow2G1467 Salvia bowleyana HOM05D000639 ORTHO05D004019 1.1e-25 120.6 113 55.8
FvH4_4g18050 Fragaria vesca HOM05D000639 ORTHO05D004019 1.9e-25 119.8 117 59.0
PSO210G5853 Papaver somniferum HOM05D000639 ORTHO05D004019 2.5e-25 119.4 123 48.8
Hund24894 Selenicereus undatus HOM05D000639 ORTHO05D004019 3.3e-25 119.0 125 53.6
CAN.G484.33 Capsicum annuum HOM05D000639 ORTHO05D004019 4.3e-25 118.6 117 51.3
THA.LOC104818926 Tarenaya hassleriana HOM05D000639 ORTHO05D004019 4.3e-25 118.6 122 50.8
Nitab4.5_0000570g0130 Nicotiana tabacum HOM05D000639 ORTHO05D004019 5.7e-25 118.2 143 49.0
Peaxi162Scf00086g00431 Petunia axillaris HOM05D000639 ORTHO05D004019 5.7e-25 118.2 138 47.1
Sed0022843 Sechium edule HOM05D000639 ORTHO05D004019 5.7e-25 118.2 126 53.2
Sc19g0005320 Simmondsia chinensis HOM05D000639 ORTHO05D004019 5.7e-25 118.2 122 49.2
MSTRG.3915 Avicennia marina HOM05D000639 ORTHO05D004019 1.3e-24 117.1 113 56.6
Gohir.D09G061400 Gossypium hirsutum HOM05D000639 ORTHO05D004019 1.3e-24 117.1 112 55.4
Sopen05g032730 Solanum pennellii HOM05D000639 ORTHO05D004019 1.3e-24 117.1 124 50.8
FAN07G2352 Fragaria x ananassa HOM05D000639 ORTHO05D005322 1.7e-24 116.7 117 57.3
Gorai.006G076000 Gossypium raimondii HOM05D000639 ORTHO05D004019 1.7e-24 116.7 88 60.2
Solyc05g054240.3 Solanum lycopersicum HOM05D000639 ORTHO05D004019 1.7e-24 116.7 124 50.8
PGR031G2129 Punica granatum HOM05D000639 ORTHO05D004019 3.7e-24 115.5 121 49.6
TWI09G1119 Tripterygium wilfordii HOM05D000639 ORTHO05D004019 4.8e-24 115.2 130 54.6
Nn3g21443 Nelumbo nucifera HOM05D000639 ORTHO05D004019 8.2e-24 114.4 121 50.4
Nitab4.5_0003466g0120 Nicotiana tabacum HOM05D000639 ORTHO05D004019 8.2e-24 114.4 143 49.7
CsaV3_6G017170 Cucumis sativus L. HOM05D000639 ORTHO05D004019 1.1e-23 114.0 124 52.4
PSO302G0100 Papaver somniferum HOM05D000639 ORTHO05D004019 1.1e-23 114.0 123 46.3
ClCG06G005130 Citrullus lanatus HOM05D000639 ORTHO05D004019 1.8e-23 113.2 124 51.6
Migut.G00162 Erythranthe guttata HOM05D000639 ORTHO05D004019 2.4e-23 112.8 113 54.0
arahy.Tifrunner.gnm1.ann1.KA48HN Arachis hypogaea HOM05D000639 ORTHO05D004019 3.1e-23 112.5 123 52.0
Lsat_1_v5_gn_5_53081 Lactuca sativa HOM05D000639 ORTHO05D004019 3.1e-23 112.5 111 47.7
Sp2g19400 Schrenkiella parvula HOM05D000639 ORTHO05D004019 3.1e-23 112.5 120 50.8
MSTRG.10095 Avicennia marina HOM05D000639 ORTHO05D004019 4.1e-23 112.1 113 54.0
MELO3C021330.2 Cucumis melo HOM05D000639 ORTHO05D004019 5.3e-23 111.7 124 51.6
ECA240G4511 Erigeron canadensis HOM05D000639 ORTHO05D004019 9.1e-23 110.9 111 45.9
DCAR_027075 Daucus carota HOM05D000639 ORTHO05D004019 1.2e-22 110.5 122 53.3
arahy.Tifrunner.gnm1.ann1.LR2V9P Arachis hypogaea HOM05D000639 ORTHO05D004019 1.5e-22 110.2 123 50.4
Thhalv10003986m.g Eutrema salsugineum HOM05D000639 ORTHO05D004019 2.6e-22 109.4 120 48.3
Lalb_Chr15g0083501 Lupinus albus HOM05D000639 ORTHO05D004019 4.5e-22 108.6 119 49.6
DCAR_023284 Daucus carota HOM05D000639 ORTHO05D004019 5.9e-22 108.2 125 52.8
Glyma.17G026500 Glycine max HOM05D000639 ORTHO05D004019 5.9e-22 108.2 122 51.6
Aqoxy2G02982 Aquilegia oxysepala HOM05D000639 ORTHO05D004019 7.7e-22 107.8 119 48.7
Lj4g0016454 Lotus japonicus HOM05D000639 ORTHO05D004019 1.0e-21 107.5 122 51.6
VMungo1215G1558 Vigna mungo HOM05D000639 ORTHO05D004019 1.0e-21 107.5 122 50.8
THA.LOC104802688 Tarenaya hassleriana HOM05D000639 ORTHO05D004019 1.3e-21 107.1 122 48.4
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 1.7e-21 106.7 65 75.4
AT3G06930 Arabidopsis thaliana HOM05D000639 ORTHO05D004019 3.8e-21 105.5 122 45.1
Lj3C817G11 Lonicera japonica HOM05D000639 ORTHO05D004019 3.8e-21 105.5 114 55.3
Lj3C819G5 Lonicera japonica HOM05D000639 ORTHO05D004019 3.8e-21 105.5 114 55.3
HanXRQChr03g0080961 Helianthus annuus HOM05D000639 ORTHO05D004019 6.5e-21 104.8 123 42.3
MBI19_g29220_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D004019 8.5e-21 104.4 131 48.1
Glyma.07G247300 Glycine max HOM05D000639 ORTHO05D004019 1.1e-20 104.0 122 50.8
HanXRQChr13g0411281 Helianthus annuus HOM05D000639 ORTHO05D004019 2.5e-20 102.8 109 46.8
Lj6C675G15 Lonicera japonica HOM05D000639 ORTHO05D004019 4.2e-20 102.1 123 51.2
Nitab4.5_0001233g0100 Nicotiana tabacum HOM05D000639 ORTHO05D004019 5.5e-20 101.7 122 46.7
Nitab4.5_0001904g0120 Nicotiana tabacum HOM05D000639 ORTHO05D004019 7.2e-20 101.3 122 47.5
Eucgr.B01318 Eucalyptus grandis HOM05D000639 ORTHO05D004019 1.2e-19 100.5 125 48.0
C07p39650 Brassica napus HOM05D000639 ORTHO05D004019 2.1e-19 99.8 122 45.1
SGA_v2.0_scaffold147G36295 Striga asiatica HOM05D000639 ORTHO05D004019 2.1e-19 99.8 113 49.6
Carub.0003s0645 Capsella rubella HOM05D000639 ORTHO05D004019 3.6e-19 99.0 122 44.3
TPR.G13846 Trifolium pratense HOM05D000639 ORTHO05D004019 3.6e-19 99.0 122 46.7
BolC7t44488H Brassica oleracea HOM05D000639 ORTHO05D004019 4.7e-19 98.6 122 45.1
Glyma.15G148200 Glycine max HOM05D000639 ORTHO05D004019 4.7e-19 98.6 122 47.5
CARHR081540 Cardamine hirsuta HOM05D000639 ORTHO05D004019 6.1e-19 98.2 122 44.3
Phvul.003G105500 Phaseolus vulgaris HOM05D000639 ORTHO05D004019 6.1e-19 98.2 122 47.5
Lalb_Chr13g0303571 Lupinus albus HOM05D000639 ORTHO05D004019 1.8e-18 96.7 120 49.2
VMungo1309G0809 Vigna mungo HOM05D000639 ORTHO05D004019 1.8e-18 96.7 118 48.3
Ca_28415_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 2.3e-18 96.3 122 45.9
Medtr2g436780 Medicago truncatula HOM05D000639 ORTHO05D004019 3.9e-18 95.5 119 49.6
Ca_21493_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 5.1e-18 95.1 122 49.2
Aa31LG5G17500 Aethionema arabicum HOM05D000639 ORTHO05D004019 6.7e-18 94.7 122 40.2
BcaB07g34210 Brassica carinata HOM05D000639 ORTHO05D004019 8.8e-18 94.4 108 48.1
Sp3g05880 Schrenkiella parvula HOM05D000639 ORTHO05D004019 2.0e-17 93.2 122 42.6
unitig_748.g8732 Utricularia gibba HOM05D000639 ORTHO05D004019 2.6e-17 92.8 115 46.1
AL8G22390 Arabidopsis lyrata HOM05D000639 ORTHO05D004019 3.3e-17 92.4 115 45.2
Lalb_Chr12g0196591 Lupinus albus HOM05D000639 ORTHO05D004019 3.3e-17 92.4 120 46.7
AT5G49020 Arabidopsis thaliana HOM05D000639 ORTHO05D004019 4.4e-17 92.0 116 43.1
Thhalv10020486m.g Eutrema salsugineum HOM05D000639 ORTHO05D004019 4.4e-17 92.0 122 41.8
Psat0s3456g0080 Pisum sativum HOM05D000639 ORTHO05D004019 5.7e-17 91.7 122 46.7
Medtr4g119900 Medicago truncatula HOM05D000639 ORTHO05D004019 7.4e-17 91.3 122 47.5
AL3G18100 Arabidopsis lyrata HOM05D000639 ORTHO05D004019 1.3e-16 90.5 122 41.8
Glyma.09G044700 Glycine max HOM05D000639 ORTHO05D004019 1.3e-16 90.5 122 44.3
CARHR286220 Cardamine hirsuta HOM05D000639 ORTHO05D004019 2.2e-16 89.7 104 45.2
A06p38610 Brassica napus HOM05D000639 ORTHO05D004019 3.7e-16 89.0 119 44.5
BraA06t26776Z Brassica rapa HOM05D000639 ORTHO05D004019 3.7e-16 89.0 119 44.5
BraA02t08766Z Brassica rapa HOM05D000639 ORTHO05D004019 6.3e-16 88.2 109 44.0
C02p57000 Brassica napus HOM05D000639 ORTHO05D004019 8.2e-16 87.8 109 45.0
BolC2t11770H Brassica oleracea HOM05D000639 ORTHO05D004019 8.2e-16 87.8 109 45.0
TPR.G3204 Trifolium pratense HOM05D000639 ORTHO05D004019 1.1e-15 87.4 122 43.4
Carub.0008s0884 Capsella rubella HOM05D000639 ORTHO05D004019 1.4e-15 87.0 112 43.8
BcaC03g17691 Brassica carinata HOM05D000639 ORTHO05D004019 2.4e-15 86.3 109 43.1
BcaC05g29823 Brassica carinata HOM05D000639 ORTHO05D004019 4.1e-15 85.5 121 40.5
BolC5t34700H Brassica oleracea HOM05D000639 ORTHO05D004019 4.1e-15 85.5 121 40.5
A05p41240 Brassica napus HOM05D000639 ORTHO05D004019 6.9e-15 84.7 112 41.1
A02p37840 Brassica napus HOM05D000639 ORTHO05D004019 9.1e-15 84.3 112 42.0
C05p60460 Brassica napus HOM05D000639 ORTHO05D004019 5.9e-14 81.6 121 38.8
CDE08G1566 Ceratophyllum demersum HOM05D000639 ORTHO05D004019 7.7e-14 81.3 129 39.5
Lj6g0003576 Lotus japonicus HOM05D000639 ORTHO05D004019 1.7e-13 80.1 112 40.2
BcaC05g29770 Brassica carinata HOM05D000639 ORTHO05D004019 1.9e-12 76.6 112 40.2
CDE02G3502 Ceratophyllum demersum HOM05D000639 ORTHO05D004019 3.2e-12 75.9 128 37.5
Cc03_g01920 Coffea canephora HOM05D000639 ORTHO05D004019 4.2e-12 75.5 69 56.5
HanXRQChr09g0240301 Helianthus annuus HOM05D000639 ORTHO05D028406 1.6e-11 73.6 56 57.1
Peaxi162Scf00576g00012 Petunia axillaris HOM05D000639 ORTHO05D028406 2.1e-11 73.2 74 47.3
BraA05t22847Z Brassica rapa HOM05D000639 ORTHO05D004019 3.9e-10 68.9 108 38.0
C06p30940 Brassica napus HOM05D000517 ORTHO05D019904 8.8e-10 67.8 123 35.0
Os07g0671700 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D004019 2.0e-09 66.6 101 39.6
Zm00001eb330380 Zea mays HOM05D000639 ORTHO05D004019 9.7e-09 64.3 70 45.7
Oeu027725.1 Olea europaea HOM05D000639 ORTHO05D004019 1.3e-08 63.9 37 78.4
Zm00001eb111180 Zea mays HOM05D000639 ORTHO05D004019 1.8e-07 60.1 111 34.2


User provided reference genes

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