Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 2.5e-53 211.8 107 100.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 4.3e-29 131.3 106 68.9
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 1.5e-26 122.9 109 65.1
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.5e-26 122.9 105 64.8
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 7.6e-26 120.6 105 63.8
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 4.9e-25 117.9 112 61.6
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 3.5e-23 111.7 111 59.5
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 4.6e-23 111.3 107 58.9
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 6.7e-22 107.5 108 59.3
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 1.9e-21 105.9 120 55.0
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 4.3e-21 104.8 107 57.9
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 4.3e-21 104.8 104 57.7
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.3e-20 103.2 108 52.8
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 2.1e-20 102.4 108 55.6
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 8.1e-20 100.5 103 58.3
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 5.3e-19 97.8 106 55.7
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 6.9e-19 97.4 115 51.3
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 9.0e-19 97.1 111 51.4
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 9.0e-19 97.1 104 52.9
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.2e-18 96.7 107 54.2
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 2.0e-18 95.9 107 52.3
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 3.4e-18 95.1 110 53.6
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 3.4e-18 95.1 107 52.3
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 1.7e-17 92.8 105 55.2
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 1.7e-17 92.8 88 63.6
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.9e-17 92.0 112 50.0
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 2.9e-17 92.0 108 50.9
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 3.8e-17 91.7 111 52.3
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 4.9e-17 91.3 112 50.9
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 6.4e-17 90.9 107 51.4
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 6.4e-17 90.9 114 49.1
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 8.4e-17 90.5 108 52.8
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 1.4e-16 89.7 110 51.8
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 1.9e-16 89.4 111 53.2
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 1.9e-16 89.4 114 50.9
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 2.4e-16 89.0 114 55.3
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 2.4e-16 89.0 108 52.8
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 4.2e-16 88.2 111 50.5
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 4.2e-16 88.2 105 49.5
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 4.2e-16 88.2 105 49.5
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.5e-16 87.8 112 49.1
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.5e-16 87.8 114 50.0
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 9.3e-16 87.0 112 49.1
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 1.6e-15 86.3 117 46.2
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 2.1e-15 85.9 105 52.4
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 2.1e-15 85.9 105 52.4
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 7.9e-15 84.0 98 54.1
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.8e-14 82.8 105 47.6
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.8e-14 82.8 105 47.6
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 1.8e-14 82.8 103 50.5
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 2.3e-14 82.4 115 48.7
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 3.0e-14 82.0 110 47.3
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 5.1e-14 81.3 115 45.2
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 5.1e-14 81.3 106 50.9
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 8.7e-14 80.5 81 56.8
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 8.7e-14 80.5 108 49.1
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 8.7e-14 80.5 107 43.9
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 7.4e-13 77.4 61 59.0
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 1.6e-12 76.3 69 59.4
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 2.1e-12 75.9 100 46.0
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 2.8e-12 75.5 62 64.5
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 4.8e-12 74.7 68 54.4
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 4.8e-12 74.7 73 57.5
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 1.4e-11 73.2 101 43.6
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 1.4e-11 73.2 100 47.0
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 1.8e-11 72.8 113 46.0
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 5.3e-11 71.2 72 56.9
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 5.3e-11 71.2 107 43.0
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 6.9e-11 70.9 131 42.0
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 6.9e-11 70.9 106 41.5
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 9.0e-11 70.5 71 54.9
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 1.5e-10 69.7 117 41.9
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 2.0e-10 69.3 128 37.5
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 2.0e-10 69.3 136 41.9
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 2.0e-10 69.3 111 45.0
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 5.8e-10 67.8 103 45.6
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 7.6e-10 67.4 105 44.8
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 1.0e-09 67.0 105 45.7
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.3e-09 66.6 103 40.8
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.3e-09 66.6 103 40.8
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 1.3e-09 66.6 103 41.7
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 1.3e-09 66.6 111 44.1
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 1.7e-09 66.2 110 42.7
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.7e-09 66.2 103 44.7
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.7e-09 66.2 103 44.7
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 6.5e-09 64.3 116 39.7
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 6.5e-09 64.3 116 39.7
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.1e-08 63.5 104 40.4
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 1.4e-08 63.2 115 39.1
Zm00001eb204270 Zea mays HOM05D021977 ORTHO05D007875 1.9e-08 62.8 69 50.7
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 2.5e-08 62.4 106 44.3
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 3.2e-08 62.0 115 39.1
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 3.2e-08 62.0 69 53.6
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 9.3e-08 60.5 119 37.8
PGR031G2453 Punica granatum HOM05D007590 ORTHO05D007875 9.3e-08 60.5 135 39.3
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 1.2e-07 60.1 115 38.3
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.1e-07 59.3 99 39.4
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 4.6e-07 58.2 119 37.0
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 6.0e-07 57.8 121 38.0
HPP92_008631 Vanilla planifolia HOM05D026338 ORTHO05D007875 6.0e-07 57.8 84 36.9
Zm00001eb383160 Zea mays HOM05D021977 ORTHO05D007875 1.0e-06 57.0 92 41.3
Carub.0002s0036 Capsella rubella HOM05D010600 ORTHO05D007875 1.3e-06 56.6 124 33.9
Gohir.A02G100100 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.3e-06 56.6 58 56.9
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 3.0e-06 55.5 100 42.0
HPP92_000619 Vanilla planifolia HOM05D026338 ORTHO05D007875 3.0e-06 55.5 84 42.9
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 3.9e-06 55.1 100 42.0
Sp2g00320 Schrenkiella parvula HOM05D010600 ORTHO05D007875 3.9e-06 55.1 122 34.4
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 5.1e-06 54.7 122 35.2
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 8.7e-06 53.9 120 34.2


User provided reference genes

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