Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.0e-174 616.7 322 100.0
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.2e-81 306.6 341 55.1
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 3.1e-75 286.2 394 47.2
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 6.6e-73 278.5 393 47.1
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 1.8e-70 270.4 346 52.3
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.0e-70 269.2 366 47.5
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 2.7e-66 256.5 356 46.1
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.5e-66 256.1 362 47.0
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 5.9e-66 255.4 361 47.4
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 3.9e-65 252.7 397 46.3
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 5.0e-65 252.3 363 48.5
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 6.6e-65 251.9 387 43.4
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 9.5e-64 248.1 420 42.4
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 9.5e-64 248.1 394 43.7
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 4.7e-63 245.7 382 43.2
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 6.2e-63 245.4 350 46.9
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 3.1e-62 243.0 395 41.0
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 3.1e-62 243.0 395 41.0
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 3.1e-62 243.0 372 42.2
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 4.0e-62 242.7 404 41.6
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.2e-61 241.1 351 46.7
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.5e-61 240.7 384 45.1
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 2.2e-60 236.9 396 41.4
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 3.7e-60 236.1 418 40.7
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.9e-60 235.7 352 44.6
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 8.3e-60 235.0 344 48.0
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 1.1e-59 234.6 392 42.9
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.1e-59 232.6 363 42.7
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 7.0e-59 231.9 391 40.7
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 7.0e-59 231.9 380 46.6
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 7.0e-59 231.9 409 42.8
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 9.2e-59 231.5 368 41.8
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 3.5e-58 229.6 363 40.8
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.3e-57 227.6 380 40.5
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 1.7e-57 227.3 374 45.2
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 2.3e-57 226.9 215 60.0
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.1e-56 224.6 384 39.3
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.1e-56 224.6 384 39.3
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.5e-56 224.2 404 41.1
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.5e-56 224.2 385 41.6
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.9e-56 223.8 384 45.1
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 3.3e-56 223.0 366 45.1
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.3e-56 222.6 362 42.0
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 5.6e-56 222.2 390 39.7
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 2.8e-55 219.9 360 48.9
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 8.1e-55 218.4 400 39.8
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.1e-54 218.0 349 42.7
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 3.1e-54 216.5 289 51.6
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 8.9e-54 214.9 368 43.2
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 4.4e-53 212.6 390 39.0
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 9.8e-53 211.5 394 39.3
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 9.8e-53 211.5 411 41.6
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 9.8e-53 211.5 344 41.9
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 2.2e-52 210.3 363 44.9
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.1e-51 206.1 339 42.8
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 7.1e-51 205.3 403 39.0
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 9.2e-51 204.9 411 39.2
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.2e-50 204.5 410 38.0
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.6e-50 204.1 252 51.2
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 3.5e-50 203.0 411 38.7
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.6e-50 202.6 410 38.3
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 6.0e-50 202.2 377 38.7
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 6.0e-50 202.2 411 38.2
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.9e-49 199.5 325 41.5
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.9e-49 199.5 325 41.5
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.9e-48 197.2 396 38.4
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 2.5e-48 196.8 332 43.7
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 4.3e-48 196.1 397 38.3
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.8e-47 193.4 383 39.4
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.8e-47 193.4 383 39.4
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.6e-47 193.0 398 37.9
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.4e-46 191.0 355 43.4
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 6.8e-46 188.7 332 41.3
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 1.5e-45 187.6 329 42.9
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.6e-45 186.8 360 36.9
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.6e-45 186.8 360 36.9
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 2.6e-45 186.8 346 41.0
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.9e-45 184.9 327 40.1
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.7e-44 184.1 357 37.0
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.9e-43 180.6 357 39.8
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.9e-43 180.6 327 39.4
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 2.7e-42 176.8 332 39.5
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 4.6e-42 176.0 347 40.9
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 4.6e-42 176.0 330 40.3
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 1.3e-41 174.5 396 39.9
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 6.6e-41 172.2 389 37.3
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.9e-40 170.6 409 38.4
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 3.3e-40 169.9 335 39.4
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 4.3e-40 169.5 385 36.6
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 5.6e-40 169.1 410 34.1
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.6e-39 167.5 341 37.0
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 2.8e-39 166.8 371 38.8
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 4.0e-38 162.9 347 39.8
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 4.0e-38 162.9 347 39.8
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 6.9e-38 162.2 354 38.7
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 6.9e-38 162.2 354 38.7
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 2.2e-36 157.1 438 33.1
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.8e-36 156.4 383 35.8
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 8.4e-36 155.2 366 37.7
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 1.4e-35 154.5 347 37.2
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.4e-35 154.5 358 34.1
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 7.1e-35 152.1 407 33.7
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.7e-33 147.5 114 68.4
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 3.0e-33 146.7 369 37.1
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.1e-32 144.8 360 33.9
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.5e-32 144.4 385 34.5
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 3.3e-32 143.3 361 35.7
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.1e-31 140.6 400 30.8
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 2.1e-31 140.6 347 32.6
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.8e-30 137.5 209 44.5
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 3.1e-30 136.7 331 36.6
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 4.0e-30 136.3 374 32.1
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 4.0e-30 136.3 226 44.7
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 5.3e-30 136.0 228 38.6
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 6.9e-30 135.6 211 43.6
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 9.0e-30 135.2 197 45.2
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 9.0e-30 135.2 197 45.2
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 9.0e-30 135.2 197 45.2
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 2.0e-29 134.0 205 44.4
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 2.9e-28 130.2 331 35.3
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 3.8e-28 129.8 186 45.2
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 3.8e-28 129.8 331 35.3
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.4e-27 127.9 354 32.5
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-27 127.9 219 42.5
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 1.4e-27 127.9 203 46.3
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.4e-27 127.9 230 42.6
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 7.1e-27 125.6 286 38.8
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 9.3e-27 125.2 279 36.2
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.5e-26 123.2 432 31.0
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 1.8e-25 120.9 236 36.9
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.1e-24 118.2 274 33.2
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 2.5e-24 117.1 178 43.3
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.3e-23 114.8 464 29.5
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 4.8e-23 112.8 212 40.1
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 4.5e-21 106.3 220 39.1
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 4.5e-21 106.3 231 36.8
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 5.8e-21 105.9 226 38.9
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 2.2e-20 104.0 220 38.6
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-19 100.9 222 36.9
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.9e-19 100.9 222 36.9
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 9.3e-19 98.6 390 27.7
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.7e-18 97.1 108 50.9
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.0e-17 95.1 213 37.1
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 5.1e-17 92.8 266 35.0
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 6.7e-17 92.4 242 35.1
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 1.8e-14 84.3 185 36.8
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 2.4e-14 84.0 99 47.5
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 9.0e-14 82.0 220 36.8
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 2.0e-13 80.9 202 33.7
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 5.8e-13 79.3 129 36.4
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.0e-12 78.6 238 34.0
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.1e-11 75.1 160 34.4
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 1.9e-11 74.3 260 30.8
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.8e-09 67.8 101 42.6
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 3.3e-08 63.5 52 59.6
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.3e-07 59.3 150 30.7
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.3e-07 59.3 150 30.7
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 8.2e-07 58.9 107 38.3
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.4e-06 58.2 178 29.2
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.4e-06 58.2 112 37.5
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.1e-06 57.0 148 35.1
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 6.9e-06 55.8 92 44.6
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 9.0e-06 55.5 144 29.9


User provided reference genes

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