Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.2e-180 636.3 314 100.0
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.1e-173 613.2 315 97.1
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 2.8e-169 598.6 315 94.6
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 8.1e-169 597.0 315 94.0
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 9.0e-168 593.6 313 93.9
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.5e-167 592.8 315 93.3
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.5e-167 592.8 313 93.9
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.6e-167 592.0 330 90.9
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.1e-165 586.6 315 91.4
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 1.4e-165 586.3 315 91.4
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 2.4e-165 585.5 315 91.7
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 3.2e-165 585.1 315 90.8
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 4.2e-165 584.7 313 92.0
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 1.2e-164 583.2 315 91.1
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 4.6e-164 581.3 313 90.4
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 1.0e-163 580.1 315 91.1
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 3.0e-163 578.6 316 90.8
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 3.9e-163 578.2 313 91.1
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 5.1e-163 577.8 313 89.8
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 1.5e-162 576.2 316 89.9
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 1.5e-162 576.2 314 88.9
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 1.9e-162 575.9 315 91.1
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 4.3e-162 574.7 315 90.8
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 5.6e-162 574.3 338 85.8
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 5.6e-162 574.3 316 89.6
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 1.3e-161 573.2 315 88.6
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 1.3e-161 573.2 315 88.6
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 2.8e-161 572.0 313 88.8
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 2.8e-161 572.0 315 90.5
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 2.8e-161 572.0 316 90.2
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 4.8e-161 571.2 315 89.5
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 8.1e-161 570.5 315 90.5
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 8.1e-161 570.5 316 89.2
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 8.1e-161 570.5 315 89.5
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 1.1e-160 570.1 315 89.5
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 3.1e-160 568.5 315 88.3
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 3.1e-160 568.5 315 89.5
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 3.1e-160 568.5 315 89.2
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 4.0e-160 568.2 316 88.0
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 6.9e-160 567.4 316 89.6
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 6.9e-160 567.4 315 88.6
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 9.0e-160 567.0 315 87.6
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 9.0e-160 567.0 315 89.5
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.2e-159 566.6 316 89.6
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 1.2e-159 566.6 315 89.2
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.4e-159 565.1 309 90.9
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 5.8e-159 564.3 315 87.3
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 5.8e-159 564.3 315 87.3
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 5.8e-159 564.3 316 88.9
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 7.6e-159 563.9 315 87.3
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 7.6e-159 563.9 314 90.8
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 1.0e-158 563.5 315 87.9
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.0e-158 563.5 315 88.6
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 1.3e-158 563.1 313 88.8
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.9e-158 562.0 313 87.9
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.9e-158 562.0 315 87.3
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 3.8e-158 561.6 315 87.6
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 8.4e-158 560.5 315 87.3
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 1.9e-157 559.3 313 86.9
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.5e-157 558.9 315 87.6
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 3.2e-157 558.5 315 86.7
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 4.2e-157 558.1 316 86.7
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 5.5e-157 557.8 315 87.3
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 1.2e-156 556.6 315 87.0
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 2.1e-156 555.8 314 86.3
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 2.1e-156 555.8 315 86.7
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.1e-156 555.8 314 88.9
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 2.7e-156 555.4 315 86.7
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 4.6e-156 554.7 315 85.7
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 4.6e-156 554.7 315 85.4
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 6.0e-156 554.3 315 85.7
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 7.9e-156 553.9 316 87.0
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 7.9e-156 553.9 316 87.0
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 1.0e-155 553.5 313 87.9
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.0e-155 553.5 337 82.8
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.3e-155 553.1 314 86.9
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 3.0e-155 552.0 322 85.1
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 3.0e-155 552.0 315 85.1
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 5.1e-155 551.2 314 85.4
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 6.7e-155 550.8 314 85.0
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.1e-154 550.1 316 86.1
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 1.9e-154 549.3 314 85.7
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 3.3e-154 548.5 315 86.3
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 5.7e-154 547.7 319 84.3
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.3e-153 546.6 312 86.2
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.3e-153 546.6 315 85.4
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 2.1e-153 545.8 315 84.4
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.1e-152 543.5 315 84.4
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 1.4e-152 543.1 382 74.1
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 3.1e-152 542.0 315 84.1
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 3.4e-151 538.5 315 86.0
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 1.0e-150 537.0 305 85.2
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 2.2e-150 535.8 309 85.8
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 2.9e-150 535.4 316 83.2
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 6.5e-150 534.3 313 85.0
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.9e-149 532.7 316 82.9
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.9e-149 532.7 317 84.9
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 2.5e-149 532.3 317 85.2
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.5e-149 532.3 317 85.5
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.5e-149 532.3 317 85.5
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.2e-149 531.6 317 85.2
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.1e-149 530.8 317 84.9
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.1e-149 530.8 317 84.9
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 1.6e-148 529.6 314 85.4
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.0e-147 526.9 322 82.0
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 2.3e-147 525.8 315 84.8
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 2.5e-146 522.3 317 81.7
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 4.3e-146 521.5 309 84.8
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 5.7e-146 521.2 310 82.6
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 2.2e-145 519.2 318 82.1
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 6.3e-145 517.7 284 87.3
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 2.0e-143 512.7 294 84.4
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 3.8e-142 508.4 318 80.8
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 5.0e-142 508.1 287 85.7
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 2.5e-141 505.8 314 81.2
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 9.4e-141 503.8 282 87.9
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 7.9e-140 500.7 314 79.9
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.0e-139 500.4 312 81.1
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.4e-139 500.0 314 79.9
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.4e-139 500.0 325 78.5
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.4e-139 500.0 283 86.2
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 1.1e-138 496.9 317 77.3
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 7.4e-138 494.2 462 60.2
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 1.1e-136 490.3 315 78.4
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 3.1e-136 488.8 315 78.1
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 1.3e-134 483.4 309 77.3
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 1.6e-132 476.5 313 76.0
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.0e-126 454.9 240 92.9
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 7.2e-125 451.1 316 72.2
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 4.0e-123 445.3 311 67.8
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 1.4e-120 436.8 313 70.3
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.8e-120 436.4 262 82.8
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 5.3e-120 434.9 284 75.4
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.8e-100 369.4 213 84.5
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.1e-85 320.9 173 91.3
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 8.1e-84 314.7 182 85.7
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 1.8e-83 313.5 252 60.3
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 1.3e-78 297.4 192 78.6
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 1.5e-74 283.9 309 49.8
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 9.2e-72 274.6 310 46.8
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 6.6e-70 268.5 164 79.9
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 2.5e-69 266.5 272 53.3
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.1e-68 263.5 151 84.8
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.1e-68 263.5 151 84.8
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.7e-63 246.5 189 64.6
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 1.1e-61 241.1 184 70.7
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 3.4e-58 229.6 280 48.9
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 4.4e-58 229.2 299 43.8
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 7.6e-58 228.4 112 96.4
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 6.4e-57 225.3 307 42.3
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.3e-54 216.9 185 62.7
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.9e-49 199.9 149 71.8
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.9e-48 197.2 142 72.5
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 7.1e-48 195.3 300 44.0
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 2.3e-46 190.3 129 72.1
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 6.7e-46 188.7 113 77.9
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 2.5e-45 186.8 113 77.0
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 2.5e-45 186.8 113 77.0
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.6e-44 184.1 103 84.5
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.8e-44 182.6 179 59.2
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 1.2e-42 177.9 137 65.0
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 2.1e-39 167.2 169 54.4
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 4.3e-37 159.5 276 35.9
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.6e-37 158.3 116 72.4
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 5.5e-32 142.5 108 65.7
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 3.7e-28 129.8 114 61.4
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.0e-26 124.0 68 83.8
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 8.5e-25 118.6 80 72.5
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 8.5e-25 118.6 80 72.5
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 5.5e-24 115.9 60 88.3
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.6e-21 107.1 97 66.0
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 4.3e-21 106.3 72 68.1
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 2.4e-19 100.5 117 45.3
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 3.1e-19 100.1 53 86.8
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 1.7e-17 94.4 89 55.1
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 5.0e-17 92.8 102 57.8
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.1e-16 91.7 47 89.4
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 1.2e-15 88.2 52 80.8
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 2.2e-09 67.4 44 72.7
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 8.0e-07 58.9 37 64.9
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 3.0e-06 57.0 67 46.3
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 3.0e-06 57.0 67 46.3
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 3.0e-06 57.0 67 46.3
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 6.7e-06 55.8 37 62.2


User provided reference genes

Program Settings