Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045706 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 2.0e-16 88.6 67 100.0
CSS0047860 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 2.0e-16 88.6 67 100.0
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 2.1e-13 78.6 67 80.6
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 1.8e-12 75.5 67 79.1
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 5.1e-12 73.9 67 74.6
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 5.1e-12 73.9 67 71.6
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 5.1e-12 73.9 67 62.7
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 5.1e-12 73.9 67 71.6
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 1.1e-11 72.8 67 70.1
Peaxi162Scf01056g00020 Petunia axillaris HOM05D002873 ORTHO05D002978 1.1e-11 72.8 67 85.1
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 3.3e-11 71.2 67 61.2
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 3.3e-11 71.2 67 74.6
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 4.3e-11 70.9 67 74.6
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 3.7e-10 67.8 67 76.1
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 4.8e-10 67.4 67 79.1
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 4.8e-10 67.4 67 73.1
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.1e-09 66.2 66 65.2
Oeu049338.1 Olea europaea HOM05D002873 ORTHO05D002978 1.1e-09 66.2 67 82.1
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 1.1e-09 66.2 67 58.2
Hma1.2p1_0588F.1_g184500 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 1.4e-09 65.9 67 79.1
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 65.2
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 1.8e-09 65.5 63 60.3
Solyc02g089580.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.8e-09 65.5 67 80.6
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 3.1e-09 64.7 66 57.6
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 3.1e-09 64.7 66 57.6
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 3.1e-09 64.7 66 57.6
CAN.G497.26 Capsicum annuum HOM05D002873 ORTHO05D002978 4.0e-09 64.3 67 80.6
CAN.G497.27 Capsicum annuum HOM05D002873 ORTHO05D002978 4.0e-09 64.3 67 80.6
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 4.0e-09 64.3 66 57.6
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 4.0e-09 64.3 67 55.2
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 5.3e-09 63.9 67 76.1
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 5.3e-09 63.9 67 76.1
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 6.9e-09 63.5 67 55.2
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 6.9e-09 63.5 67 71.6
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 9.0e-09 63.2 67 76.1
Peaxi162Scf00019g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 9.0e-09 63.2 38 86.8
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.2e-08 62.8 63 61.9
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 1.2e-08 62.8 66 56.1
Actinidia36291 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.5e-08 62.4 67 74.6
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.5e-08 62.4 67 70.1
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 1.5e-08 62.4 66 56.1
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 2.0e-08 62.0 67 53.7
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 2.0e-08 62.0 67 68.7
Cc07_g04790 Coffea canephora HOM05D002873 ORTHO05D002978 3.4e-08 61.2 67 79.1
PGSC0003DMG400010052 Solanum tuberosum HOM05D002873 ORTHO05D002978 3.4e-08 61.2 67 77.6
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 3.4e-08 61.2 66 54.5
Rhsim08G0081300 Rhododendron simsii HOM05D002873 ORTHO05D002978 4.5e-08 60.8 38 84.2
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 5.8e-08 60.5 62 56.5
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 5.8e-08 60.5 66 75.8
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 5.8e-08 60.5 67 74.6
Solyc02g089590.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.0e-07 59.7 67 76.1
vmacro18087 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 1.0e-07 59.7 67 77.6
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 1.3e-07 59.3 62 75.8
Nitab4.5_0001324g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.3e-07 59.3 67 76.1
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 56.1
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 2.2e-07 58.5 66 59.1
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 2.2e-07 58.5 67 65.7
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 2.9e-07 58.2 69 65.2
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 3.8e-07 57.8 67 50.7
Sopen02g034310 Solanum pennellii HOM05D002873 ORTHO05D002978 3.8e-07 57.8 67 76.1
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 4.9e-07 57.4 64 51.6
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 4.9e-07 57.4 66 65.2
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 4.9e-07 57.4 66 50.0
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 6.5e-07 57.0 65 56.9
Duzib268G0192 Durio zibethinus HOM05D002873 ORTHO05D002978 6.5e-07 57.0 66 75.8
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 8.4e-07 56.6 66 48.5
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 8.4e-07 56.6 66 48.5
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 8.4e-07 56.6 60 71.7
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 8.4e-07 56.6 66 71.2
Rhsim08G0081200 Rhododendron simsii HOM05D002873 ORTHO05D002978 8.4e-07 56.6 67 74.6
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 1.1e-06 56.2 61 52.5
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 48.5
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.1e-06 56.2 65 70.8
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 1.1e-06 56.2 62 66.1
Psat3g191840 Pisum sativum HOM05D002873 ORTHO05D002978 1.1e-06 56.2 38 78.9
Rhsim10G0062500 Rhododendron simsii HOM05D007347 ORTHO05D009296 1.1e-06 56.2 38 78.9
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 1.4e-06 55.8 64 50.0
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 1.4e-06 55.8 64 50.0
Cfa007996 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.4e-06 55.8 66 71.2
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.9e-06 55.5 67 49.3
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 50.0
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 63.6
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 47.0
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 47.0
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 47.0
Migut.K00873 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.5e-06 55.1 67 73.1
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 2.5e-06 55.1 62 54.8
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 2.5e-06 55.1 62 48.4
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 3.2e-06 54.7 66 51.5
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.2e-06 54.7 66 60.6
CiPaw.03G007000 Carya illinoinensis HOM05D002873 ORTHO05D002978 4.2e-06 54.3 67 68.7
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 4.2e-06 54.3 67 49.3
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 4.2e-06 54.3 67 53.7
Ciclev10013625m.g Citrus clementina HOM05D002873 ORTHO05D002978 5.5e-06 53.9 34 82.4
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 5.5e-06 53.9 66 57.6
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 7.1e-06 53.5 66 47.0
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 7.1e-06 53.5 66 47.0
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 7.1e-06 53.5 67 70.1
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 7.1e-06 53.5 66 65.2
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 9.3e-06 53.1 67 49.3
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 9.3e-06 53.1 60 46.7
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 9.3e-06 53.1 66 62.1


User provided reference genes

Program Settings