Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045669 Camellia sinensis var. sinensis HOM05D008311 ORTHO05D010526 5.4e-53 210.7 103 100.0
Cfa016060 Carpinus fangiana HOM05D008311 ORTHO05D010526 1.1e-34 149.8 100 74.0
Haze_00388 Corylus avellana HOM05D008311 ORTHO05D010526 4.3e-34 147.9 100 74.0
TAR629G0038 Trochodendron aralioides HOM05D008311 ORTHO05D010526 9.5e-34 146.7 100 72.0
Actinidia08755 Actinidia chinensis HOM05D008311 ORTHO05D010526 8.1e-33 143.7 100 71.0
Aqoxy4G02584 Aquilegia oxysepala HOM05D008311 ORTHO05D010526 1.4e-32 142.9 100 70.0
GSVIVG01024350001 Vitis vinifera HOM05D008311 ORTHO05D010526 1.8e-32 142.5 100 71.0
QL09p022981 Quercus lobata HOM05D008311 ORTHO05D010526 1.2e-31 139.8 99 68.7
MD07G1310100 Malus domestica HOM05D008311 ORTHO05D010526 8.3e-30 133.7 100 64.0
Nn3g20131 Nelumbo nucifera HOM05D008311 ORTHO05D010526 1.9e-29 132.5 100 66.0
RcHm_v2.0_Chr1g0384481 Rosa chinensis HOM05D008311 ORTHO05D010526 9.2e-29 130.2 100 64.0
Prupe.2G328000 Prunus persica HOM05D008311 ORTHO05D010526 1.6e-28 129.4 101 64.4
Manes.09G128000 Manihot esculenta HOM05D008311 ORTHO05D010526 4.6e-28 127.9 100 64.0
MBI04_g20345_MAGBIO Magnolia biondii HOM05D008311 ORTHO05D010526 3.0e-27 125.2 100 66.0
Eucgr.A02984 Eucalyptus grandis HOM05D008311 ORTHO05D010526 3.3e-26 121.7 100 61.0
Sed0001927 Sechium edule HOM05D008311 ORTHO05D010526 7.3e-26 120.6 100 61.0
Lj3A885T48 Lonicera japonica HOM05D008311 ORTHO05D010526 9.5e-26 120.2 111 55.0
Thecc.05G218800 Theobroma cacao HOM05D008311 ORTHO05D010526 1.6e-25 119.4 100 58.0
CsaV3_2G036620 Cucumis sativus L. HOM05D008311 ORTHO05D010526 3.6e-25 118.2 100 61.0
Ciclev10020460m.g Citrus clementina HOM05D008311 ORTHO05D010526 4.7e-25 117.9 100 60.0
FAN10G1178 Fragaria x ananassa HOM05D008311 ORTHO05D010526 8.1e-25 117.1 100 58.0
CDE11G1038 Ceratophyllum demersum HOM05D008311 ORTHO05D010526 1.8e-24 115.9 100 58.0
MELO3C021863.2 Cucumis melo HOM05D008311 ORTHO05D010526 1.8e-24 115.9 100 60.0
EL10Ac3g05056 Beta vulgaris HOM05D008311 ORTHO05D010526 3.1e-24 115.2 100 57.0
Lsat_1_v5_gn_8_108920 Lactuca sativa HOM05D008311 ORTHO05D010526 6.8e-24 114.0 100 58.0
ClCG09G017160 Citrullus lanatus HOM05D008311 ORTHO05D010526 8.9e-24 113.6 100 58.0
FAN03G2372 Fragaria x ananassa HOM05D008311 ORTHO05D010526 8.9e-24 113.6 100 57.0
Dinv29140 Davidia involucrata HOM05D008311 ORTHO05D010526 9.9e-23 110.2 79 70.9
Duzib128G1797 Durio zibethinus HOM05D008311 ORTHO05D010526 4.9e-22 107.8 101 54.5
DCAR_020420 Daucus carota HOM05D008311 ORTHO05D010526 8.4e-22 107.1 100 59.0
AUR62028199 Chenopodium quinoa HOM05D008311 ORTHO05D010526 7.1e-21 104.0 100 52.0
COL.COLO4_15199 Corchorus olitorius HOM05D008311 ORTHO05D010526 1.2e-20 103.2 102 52.0
Gohir.A08G221662 Gossypium hirsutum HOM05D008311 ORTHO05D010526 2.1e-20 102.4 100 52.0
Atru.chr12.1923 Acer truncatum HOM05D008311 ORTHO05D010526 3.5e-20 101.7 99 52.5
CDE11G1017 Ceratophyllum demersum HOM05D008311 ORTHO05D010526 1.3e-19 99.8 100 50.0
ATR0665G332 Amborella trichopoda HOM05D008311 ORTHO05D010526 1.9e-18 95.9 106 49.1
Gorai.004G256700 Gossypium raimondii HOM05D008311 ORTHO05D010526 3.3e-18 95.1 101 51.5
Gohir.D08G241300 Gossypium hirsutum HOM05D008311 ORTHO05D010526 4.3e-18 94.7 101 51.5
HPP92_009011 Vanilla planifolia HOM05D008311 ORTHO05D010526 4.3e-18 94.7 104 49.0
Os04g0592500 Oryza sativa ssp. japonica HOM05D008311 ORTHO05D010526 6.2e-17 90.9 104 48.1
SEGI_24543 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 1.1e-16 90.1 105 43.8
SEGI_38800 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 1.4e-16 89.7 105 43.8
Zm00001eb429910 Zea mays HOM05D008311 ORTHO05D010526 1.4e-16 89.7 104 48.1
HPP92_005385 Vanilla planifolia HOM05D008311 ORTHO05D010526 2.6e-15 85.5 104 47.1
vmacro06529 Vaccinium macrocarpon HOM05D008311 ORTHO05D010526 2.9e-14 82.0 57 66.7
AUR62002082 Chenopodium quinoa HOM05D008311 ORTHO05D010526 5.4e-13 77.8 75 52.0
AagrBONN_evm.TU.Sc2ySwM_117.4008 Anthoceros agrestis HOM05D008311 ORTHO05D010526 8.7e-11 70.5 100 41.0
Zm00001eb201380 Zea mays HOM05D008311 ORTHO05D010526 8.1e-09 63.9 78 41.0
Zm00001eb341760 Zea mays HOM05D008311 ORTHO05D010526 2.4e-08 62.4 78 39.7
THA.LOC104821739 Tarenaya hassleriana HOM05D008311 ORTHO05D010526 6.4e-06 54.3 63 42.9


User provided reference genes

Program Settings