Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 1.0e-143 515.4 258 100.0
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 4.2e-137 493.4 262 96.2
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.7e-90 338.6 270 66.7
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 1.1e-89 335.9 261 67.0
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.0e-87 329.3 261 66.3
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 3.0e-79 301.2 268 61.6
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 1.2e-62 246.1 266 51.9
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 1.2e-62 246.1 266 51.9
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 2.6e-62 245.0 266 49.2
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 2.2e-61 241.9 260 53.1
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 1.1e-60 239.6 266 48.1
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 9.2e-60 236.5 266 47.7
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 4.6e-59 234.2 268 47.8
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 2.3e-55 221.9 230 49.6
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 1.2e-54 219.5 230 51.3
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 3.2e-52 211.5 267 45.7
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 4.1e-52 211.1 260 45.0
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 7.0e-52 210.3 232 46.1
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 2.0e-51 208.8 245 47.3
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 4.6e-51 207.6 239 49.0
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 6.0e-51 207.2 263 45.2
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 1.0e-50 206.5 246 44.3
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 5.0e-50 204.1 275 42.9
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 1.1e-49 203.0 248 44.8
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 5.6e-49 200.7 249 42.2
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 1.6e-48 199.1 214 50.9
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.6e-48 199.1 232 44.0
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 3.6e-48 198.0 265 41.9
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 1.5e-46 192.6 256 41.8
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 2.2e-45 188.7 255 43.9
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 3.2e-44 184.9 233 46.4
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 3.2e-44 184.9 214 46.7
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 3.2e-44 184.9 216 45.8
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 5.4e-44 184.1 226 42.9
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 5.4e-44 184.1 249 42.2
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 7.1e-44 183.7 241 44.8
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 9.2e-44 183.3 255 42.0
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 1.2e-43 183.0 251 45.0
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 2.1e-43 182.2 232 44.4
HanXRQChr03g0075031 Helianthus annuus HOM05D005764 ORTHO05D006600 2.7e-43 181.8 243 42.4
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 4.6e-43 181.0 216 45.8
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 6.0e-43 180.6 227 42.7
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 6.0e-43 180.6 216 45.8
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 1.7e-42 179.1 249 41.0
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 1.1e-41 176.4 248 40.3
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 1.1e-41 176.4 225 42.2
Sopen07g023950 Solanum pennellii HOM05D005764 ORTHO05D006600 1.9e-41 175.6 223 43.0
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 3.3e-41 174.9 256 39.5
Lsat_1_v5_gn_9_103540 Lactuca sativa HOM05D005764 ORTHO05D006600 3.3e-41 174.9 234 41.5
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 4.3e-41 174.5 234 40.6
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 5.6e-41 174.1 212 45.8
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 1.6e-40 172.6 230 44.3
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 1.6e-40 172.6 255 38.8
ATR0317G130 Amborella trichopoda HOM05D005764 ORTHO05D006600 4.7e-40 171.0 232 39.7
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 4.7e-40 171.0 257 40.1
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 1.8e-39 169.1 240 41.2
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 1.8e-39 169.1 244 42.6
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 6.8e-39 167.2 240 40.8
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 1.2e-38 166.4 247 40.9
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 2.6e-38 165.2 220 44.1
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 2.6e-38 165.2 220 44.1
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 2.6e-38 165.2 231 39.0
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.6e-38 165.2 244 40.6
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 3.4e-38 164.9 204 46.6
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 3.4e-38 164.9 263 39.2
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 4.4e-38 164.5 229 39.3
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 9.9e-38 163.3 241 39.8
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 1.3e-37 162.9 255 40.4
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 1.3e-37 162.9 231 39.8
Gohir.D03G110000 Gossypium hirsutum HOM05D005764 ORTHO05D006600 1.7e-37 162.5 248 40.7
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 2.4e-36 158.7 201 46.3
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 3.2e-36 158.3 242 39.7
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 3.2e-36 158.3 231 38.5
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.6e-35 156.0 209 43.1
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 6.0e-35 154.1 200 43.5
THA.LOC104804672 Tarenaya hassleriana HOM05D005764 ORTHO05D006600 6.0e-35 154.1 236 38.1
QL04p006829 Quercus lobata HOM05D000056 ORTHO05D000019 1.1e-33 149.8 207 45.4
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 4.7e-32 144.4 250 37.2
Duzib205G1181 Durio zibethinus HOM05D005764 ORTHO05D006600 5.2e-31 141.0 228 40.4
Lsat_1_v5_gn_4_84661 Lactuca sativa HOM05D005764 ORTHO05D006600 5.2e-31 141.0 231 36.8
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 8.9e-31 140.2 253 36.0
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 2.0e-30 139.0 250 37.2
HanXRQChr09g0273911 Helianthus annuus HOM05D005764 ORTHO05D006600 4.4e-30 137.9 201 41.8
Atru.chr6.3419 Acer truncatum HOM05D005764 ORTHO05D006600 5.8e-30 137.5 258 35.7
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 4.9e-29 134.4 224 38.8
Sp2g25170 Schrenkiella parvula HOM05D005764 ORTHO05D006600 4.2e-28 131.3 220 35.5
Atru.chr6.3407 Acer truncatum HOM05D005764 ORTHO05D006600 9.3e-28 130.2 259 34.0
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 9.3e-28 130.2 231 35.5
Atru.chr1.4150 Acer truncatum HOM05D005764 ORTHO05D006600 2.7e-27 128.6 196 41.3
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 2.7e-27 128.6 224 37.1
ECA240G4054 Erigeron canadensis HOM05D005764 ORTHO05D006600 3.5e-27 128.3 153 45.8
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 1.3e-26 126.3 236 36.4
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 6.6e-26 124.0 149 45.0
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 1.9e-25 122.5 234 34.2
Ciclev10014235m.g Citrus clementina HOM05D005764 ORTHO05D006600 3.3e-25 121.7 168 41.7
BolC3t18765H Brassica oleracea HOM05D005764 ORTHO05D006600 9.6e-25 120.2 227 36.1
C03p65110 Brassica napus HOM05D005764 ORTHO05D006600 1.3e-24 119.8 227 36.1
Solyc07g045400.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 1.6e-24 119.4 171 40.4
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 3.6e-24 118.2 227 33.5
AT5G61990 Arabidopsis thaliana HOM05D005764 ORTHO05D006600 8.1e-24 117.1 249 32.1
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 8.1e-24 117.1 116 50.9
Nitab4.5_0006992g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 8.1e-24 117.1 97 55.7
CDE05G2510 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 1.1e-23 116.7 197 34.0
Nitab4.5_0005425g0010 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.1e-23 116.7 97 56.7
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 1.1e-23 116.7 121 47.9
A06p28690 Brassica napus HOM05D005764 ORTHO05D006600 2.6e-22 112.1 206 36.4
BraA06t25809Z Brassica rapa HOM05D005764 ORTHO05D006600 2.6e-22 112.1 206 36.4
vmacro19171 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.2e-21 109.0 184 38.6
HanXRQChr16g0498891 Helianthus annuus HOM05D005764 ORTHO05D006600 1.9e-20 105.9 234 31.6
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 3.3e-17 95.1 98 50.0
RcHm_v2.0_Chr2g0162681 Rosa chinensis HOM05D005764 ORTHO05D006600 3.3e-17 95.1 173 38.2
CDE02G2785 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 7.3e-17 94.0 242 26.0
CDE05G0348 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 4.5e-14 84.7 188 29.8
ATR0317G133 Amborella trichopoda HOM05D005764 ORTHO05D006600 7.6e-14 84.0 107 39.3
ECA232G3323 Erigeron canadensis HOM05D005764 ORTHO05D006600 1.1e-12 80.1 111 36.9
MELO3C011746.2 Cucumis melo HOM05D005764 ORTHO05D006600 1.2e-11 76.6 117 35.0
ECA248G1009 Erigeron canadensis HOM05D005764 ORTHO05D006600 1.6e-11 76.3 92 44.6
SEGI_02979 Sequoiadendron giganteum HOM05D007551 ORTHO05D006600 2.7e-11 75.5 226 23.5
Actinidia09797 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.8e-10 72.8 92 45.7
Peaxi162Scf00314g00530 Petunia axillaris HOM05D005764 ORTHO05D006600 1.8e-10 72.8 54 57.4
ECA232G4944 Erigeron canadensis HOM05D000422 ORTHO05D006600 3.0e-10 72.0 80 45.0
HPP92_025492 Vanilla planifolia HOM05D005764 ORTHO05D006600 3.9e-10 71.6 110 40.0
Aqoxy7G03003 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 8.7e-10 70.5 92 37.0
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 1.1e-09 70.1 253 26.9
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 1.9e-09 69.3 235 24.3
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 2.5e-09 68.9 243 26.3
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 4.3e-09 68.2 226 25.7
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 4.3e-09 68.2 247 23.5
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 5.6e-09 67.8 248 27.0
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 7.4e-09 67.4 236 25.0
A04p12420 Brassica napus HOM05D006858 ORTHO05D008767 1.3e-08 66.6 240 25.4
Atru.chr6.215 Acer truncatum HOM05D001465 ORTHO05D006600 2.1e-08 65.9 86 39.5
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 2.1e-08 65.9 240 25.0
SEGI_33508 Sequoiadendron giganteum HOM05D006858 ORTHO05D008767 2.1e-08 65.9 182 24.2
HPP92_025444 Vanilla planifolia HOM05D005764 ORTHO05D006600 2.1e-08 65.9 78 37.2
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 2.8e-08 65.5 177 28.2
Potri.004G020900 Populus trichocarpa HOM05D007956 ORTHO05D010152 3.7e-08 65.1 225 24.0
RcHm_v2.0_Chr1g0325241 Rosa chinensis HOM05D005764 ORTHO05D006600 3.7e-08 65.1 78 46.2
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 3.7e-08 65.1 234 24.4
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 4.8e-08 64.7 229 26.6
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 4.8e-08 64.7 227 23.8
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 8.1e-08 63.9 221 23.1
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 8.1e-08 63.9 222 24.3
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 8.1e-08 63.9 238 22.7
Eucgr.K02196 Eucalyptus grandis HOM05D005764 ORTHO05D006600 1.1e-07 63.5 100 39.0
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 1.4e-07 63.2 219 24.2
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 1.8e-07 62.8 219 24.2
Actinidia17852 Actinidia chinensis HOM05D006858 ORTHO05D008767 3.1e-07 62.0 220 24.1
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 3.1e-07 62.0 208 24.0
Gorai.009G176500 Gossypium raimondii HOM05D007956 ORTHO05D010152 3.1e-07 62.0 256 27.3
BcaB06g27361 Brassica carinata HOM05D006858 ORTHO05D008767 4.0e-07 61.6 233 25.3
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 4.0e-07 61.6 234 22.6
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 5.3e-07 61.2 260 23.8
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 5.3e-07 61.2 260 23.8
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 5.3e-07 61.2 240 24.6
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 5.3e-07 61.2 238 25.2
CsaV3_5G029290 Cucumis sativus L. HOM05D008657 ORTHO05D010869 5.3e-07 61.2 235 21.3
Lj9A359T74 Lonicera japonica HOM05D006858 ORTHO05D008767 5.3e-07 61.2 256 24.2
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 6.9e-07 60.8 239 24.3
Sabra15G0125700 Salix brachista HOM05D034324 ORTHO05D006600 6.9e-07 60.8 44 59.1
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 9.0e-07 60.5 228 25.0
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 1.2e-06 60.1 228 25.0
Dinv28212 Davidia involucrata HOM05D007291 ORTHO05D009038 1.2e-06 60.1 215 22.8
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 1.5e-06 59.7 253 22.5
SEGI_21982 Sequoiadendron giganteum HOM05D005764 ORTHO05D006600 1.5e-06 59.7 127 28.3
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 2.0e-06 59.3 235 20.4
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 2.6e-06 58.9 212 24.5
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 3.4e-06 58.5 110 26.4
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 4.5e-06 58.2 255 22.7
Nitab4.5_0000408g0040 Nicotiana tabacum HOM05D007063 ORTHO05D008822 4.5e-06 58.2 243 26.7
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 4.5e-06 58.2 225 25.8
CARHR262550 Cardamine hirsuta HOM05D006858 ORTHO05D008767 5.8e-06 57.8 241 22.0
RcHm_v2.0_Chr7g0229441 Rosa chinensis HOM05D005764 ORTHO05D006600 5.8e-06 57.8 105 34.3
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 5.8e-06 57.8 233 26.2
AL1G60900 Arabidopsis lyrata HOM05D006819 ORTHO05D008763 7.6e-06 57.4 96 38.5
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 7.6e-06 57.4 103 28.2
CDE04G3788 Ceratophyllum demersum HOM05D007639 ORTHO05D009509 7.6e-06 57.4 133 28.6
DCAR_030120 Daucus carota HOM05D000424 ORTHO05D000355 7.6e-06 57.4 111 28.8
DCAR_030127 Daucus carota HOM05D000424 ORTHO05D000355 7.6e-06 57.4 111 28.8
Glyma.06G116600 Glycine max HOM05D000424 ORTHO05D000355 7.6e-06 57.4 203 24.1
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 7.6e-06 57.4 221 24.0
THA.LOC104809641 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 7.6e-06 57.4 212 24.5
Cc08_g01370 Coffea canephora HOM05D008470 ORTHO05D010644 1.0e-05 57.0 112 31.2
Nitab4.5_0003030g0120 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.0e-05 57.0 104 30.8
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 1.0e-05 57.0 225 25.3


User provided reference genes

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