Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 1.8e-224 782.3 415 100.0
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 2.2e-185 652.5 417 86.3
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 2.8e-185 652.1 418 86.8
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 4.2e-181 638.3 410 84.6
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.2e-180 636.7 385 86.8
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 3.0e-171 605.5 384 83.1
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 8.8e-171 604.0 380 84.7
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 6.3e-169 597.8 403 80.6
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.1e-168 595.5 402 80.1
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 7.0e-168 594.3 409 80.2
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 9.1e-168 594.0 383 82.5
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 2.0e-167 592.8 381 82.2
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 2.6e-167 592.4 402 80.1
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.7e-167 590.9 391 82.6
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 2.9e-166 589.0 389 81.0
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 5.0e-166 588.2 387 82.9
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.1e-165 587.0 381 82.4
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.5e-165 586.6 381 80.8
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 1.9e-165 586.3 381 82.9
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 2.5e-165 585.9 365 85.2
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 2.5e-165 585.9 401 80.3
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 2.1e-164 582.8 385 81.8
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 3.6e-164 582.0 391 81.1
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 3.6e-164 582.0 341 89.4
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 3.6e-164 582.0 339 89.1
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 4.7e-164 581.6 391 79.3
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 4.7e-164 581.6 341 89.1
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 6.1e-164 581.3 352 87.5
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 8.0e-164 580.9 341 89.1
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 8.0e-164 580.9 394 78.7
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 1.0e-163 580.5 407 78.4
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 1.8e-163 579.7 386 80.6
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 3.0e-163 578.9 384 81.0
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 5.2e-163 578.2 403 78.2
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 5.2e-163 578.2 401 78.8
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 5.2e-163 578.2 381 80.1
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 6.7e-163 577.8 380 81.6
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 6.7e-163 577.8 386 78.8
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 6.7e-163 577.8 382 80.6
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 8.8e-163 577.4 391 81.3
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.5e-162 576.6 336 89.0
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 1.5e-162 576.6 392 79.3
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 1.5e-162 576.6 335 89.3
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 2.6e-162 575.9 397 79.3
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 4.4e-162 575.1 413 76.3
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 5.7e-162 574.7 339 88.5
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 5.7e-162 574.7 381 78.2
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 7.5e-162 574.3 392 78.8
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 1.3e-161 573.5 414 77.5
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.3e-161 573.5 393 78.1
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.7e-161 573.2 392 79.1
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 2.2e-161 572.8 396 79.0
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 6.3e-161 571.2 397 78.8
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 8.2e-161 570.9 391 78.8
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 1.1e-160 570.5 393 78.1
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.4e-160 570.1 391 80.3
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.1e-160 568.9 379 81.0
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 3.1e-160 568.9 389 77.9
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 4.1e-160 568.5 387 78.6
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 5.3e-160 568.2 409 75.8
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 9.1e-160 567.4 379 79.4
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 1.6e-159 566.6 385 80.3
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 2.0e-159 566.2 364 82.1
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.0e-159 566.2 378 78.8
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 2.7e-159 565.8 381 78.7
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 2.7e-159 565.8 397 76.6
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 3.5e-159 565.5 408 74.8
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 4.5e-159 565.1 388 78.1
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 1.0e-158 563.9 383 80.4
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 1.3e-158 563.5 394 76.9
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-158 563.5 415 74.9
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.3e-158 563.5 415 74.9
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 1.7e-158 563.1 400 77.8
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.7e-158 563.1 359 83.3
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.7e-158 563.1 359 83.3
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 2.2e-158 562.8 399 75.9
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 3.8e-158 562.0 348 83.9
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.8e-158 562.0 327 89.6
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 6.5e-158 561.2 390 77.7
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 8.5e-158 560.8 392 76.5
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.5e-157 560.1 415 74.7
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.9e-157 559.7 415 74.5
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.9e-157 559.7 415 74.5
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 3.2e-157 558.9 332 86.4
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 3.2e-157 558.9 332 86.4
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.2e-157 558.5 385 77.7
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 7.2e-157 557.8 397 76.6
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.6e-156 556.6 334 85.9
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 1.6e-156 556.6 334 85.9
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.1e-156 556.2 385 77.1
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 2.7e-156 555.8 398 76.4
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 2.7e-156 555.8 379 78.9
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 4.7e-156 555.1 334 85.6
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 6.1e-156 554.7 332 85.5
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 8.0e-156 554.3 391 75.4
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 8.0e-156 554.3 348 82.5
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 1.0e-155 553.9 333 85.0
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 3.0e-155 552.4 334 85.0
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 4.0e-155 552.0 332 85.5
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 4.4e-154 548.5 353 81.9
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 8.3e-153 544.3 332 84.6
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.1e-152 543.9 338 83.1
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 9.1e-152 540.8 398 73.9
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 2.7e-151 539.3 420 72.6
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.7e-150 536.6 372 78.5
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 3.8e-150 535.4 388 74.7
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 5.0e-150 535.0 414 72.7
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 1.4e-147 526.9 326 82.5
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 7.5e-146 521.2 297 90.6
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 2.4e-144 516.2 404 69.6
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 2.0e-143 513.1 381 73.8
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.7e-143 512.7 297 87.9
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 2.3e-142 509.6 383 73.4
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 3.8e-142 508.8 307 84.7
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 2.1e-140 503.1 327 78.9
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 2.1e-140 503.1 330 79.4
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 4.7e-140 501.9 297 87.2
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 5.9e-135 485.0 332 77.7
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 1.3e-134 483.8 338 77.2
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.3e-134 483.8 312 80.4
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 8.6e-134 481.1 349 71.9
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 2.0e-130 469.9 389 70.2
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 1.7e-129 466.8 404 68.6
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 2.3e-126 456.4 426 60.6
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 3.0e-126 456.1 326 72.7
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 4.1e-120 435.6 246 93.1
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 5.1e-118 428.7 272 84.6
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 7.6e-114 414.8 321 68.8
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.8e-113 412.5 330 70.0
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 4.3e-109 399.1 333 62.8
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 3.4e-106 389.4 289 67.8
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 6.4e-97 358.6 338 57.4
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.8e-91 340.5 198 89.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 2.6e-82 310.1 198 83.3
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 2.6e-82 310.1 198 83.3
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.8e-81 306.2 379 52.8
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 4.3e-77 292.7 166 90.4
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 3.2e-64 250.0 294 45.9
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 4.8e-60 236.1 129 92.2
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 8.2e-60 235.3 293 45.4
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.6e-55 219.9 154 77.9
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.3e-54 217.2 332 41.9
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 2.0e-53 214.2 201 64.2
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.2e-49 200.7 178 64.6
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.3e-38 164.1 213 50.2
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 6.8e-38 162.5 149 61.1
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 7.0e-35 152.5 134 64.2
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 4.7e-31 139.8 80 88.8
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 6.1e-31 139.4 92 73.9
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 3.5e-18 97.1 75 70.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 6.2e-15 86.3 48 91.7
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 6.8e-14 82.8 57 71.9
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 3.4e-13 80.5 90 52.2
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 9.8e-13 79.0 62 67.7
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 7.8e-10 69.3 42 69.0
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 6.6e-09 66.2 43 76.7
ATR0037G072 Amborella trichopoda HOM05D004740 ORTHO05D066598 6.8e-06 56.2 58 50.0


User provided reference genes

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