Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 1.4e-254 882.5 449 100.0
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 9.5e-155 550.8 526 61.2
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 4.7e-154 548.5 562 57.5
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 2.4e-153 546.2 484 62.2
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 5.8e-152 541.6 562 57.3
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 2.4e-150 536.2 533 58.5
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 9.2e-150 534.3 561 56.9
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.3e-148 529.6 530 58.9
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 3.0e-148 529.3 442 63.1
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.9e-148 528.9 515 59.4
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 3.9e-148 528.9 480 61.9
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 3.9e-148 528.9 523 58.3
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 4.3e-147 525.4 477 60.8
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 7.3e-147 524.6 564 54.3
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 2.1e-146 523.1 502 59.6
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 2.8e-146 522.7 495 59.0
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 3.6e-146 522.3 662 50.5
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 6.2e-146 521.5 559 55.3
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 6.2e-146 521.5 464 61.6
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.4e-145 520.4 550 56.4
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 4.0e-145 518.8 521 56.8
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 5.3e-145 518.5 551 56.1
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 6.9e-145 518.1 525 57.1
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 1.2e-144 517.3 562 54.8
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.7e-143 513.5 454 61.5
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 2.2e-143 513.1 537 56.4
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 4.9e-143 511.9 521 56.2
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 6.4e-143 511.5 529 55.8
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 8.4e-143 511.1 477 58.3
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 5.4e-142 508.4 476 58.2
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 5.4e-142 508.4 456 60.1
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 5.4e-142 508.4 489 58.3
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 1.6e-141 506.9 545 56.0
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 2.7e-141 506.1 501 57.7
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 3.5e-141 505.8 441 60.5
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 3.5e-141 505.8 445 60.9
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 6.0e-141 505.0 493 56.2
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.3e-140 503.8 406 65.0
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 1.7e-140 503.4 498 57.2
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 3.0e-140 502.7 522 55.4
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 3.9e-140 502.3 502 57.6
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.1e-139 500.7 547 55.4
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.5e-139 500.4 541 53.0
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 2.5e-139 499.6 518 56.0
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 2.5e-139 499.6 540 54.4
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 3.3e-139 499.2 535 54.2
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 4.3e-139 498.8 520 56.9
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 3.6e-138 495.7 445 61.1
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 4.8e-138 495.4 502 55.8
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 4.8e-138 495.4 541 53.4
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 6.2e-138 495.0 526 54.2
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 8.1e-138 494.6 464 59.3
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 3.1e-137 492.7 545 53.6
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 6.9e-137 491.5 538 54.1
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 6.9e-137 491.5 468 57.9
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 2.6e-136 489.6 547 53.7
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 4.5e-136 488.8 534 54.3
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 5.8e-136 488.4 520 55.2
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 1.3e-135 487.3 495 54.9
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.2e-135 486.5 518 56.0
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 2.2e-135 486.5 509 57.0
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.9e-135 485.3 518 56.0
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 6.4e-135 485.0 534 53.9
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.1e-134 484.2 499 53.5
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.4e-134 483.8 538 54.8
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.4e-134 483.0 518 55.0
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 5.4e-134 481.9 501 57.1
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 5.4e-134 481.9 518 53.7
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 9.3e-134 481.1 489 54.4
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.6e-133 480.3 564 52.5
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 2.1e-133 479.9 518 53.5
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.5e-133 479.2 453 58.3
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 3.5e-133 479.2 491 55.2
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 4.6e-133 478.8 522 55.2
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 6.0e-133 478.4 541 54.3
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.3e-132 477.2 468 57.3
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.3e-132 476.5 526 54.6
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.3e-132 476.5 605 49.1
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 3.0e-132 476.1 462 57.1
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 6.7e-132 474.9 442 59.7
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.1e-131 474.2 443 59.1
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 1.1e-131 474.2 526 52.7
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.3e-131 472.6 526 52.3
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.3e-131 472.2 518 55.2
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 9.6e-131 471.1 490 55.7
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 9.6e-131 471.1 491 55.4
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 8.1e-130 468.0 469 56.9
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.4e-129 466.5 515 55.7
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 3.1e-129 466.1 650 47.8
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 9.0e-129 464.5 495 53.7
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 9.0e-129 464.5 495 53.7
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.5e-128 463.8 439 57.6
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 2.0e-128 463.4 535 50.8
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 2.0e-128 463.4 539 50.3
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 3.4e-128 462.6 463 56.2
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.3e-127 460.7 512 53.1
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.7e-127 460.3 511 53.8
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 2.9e-127 459.5 546 51.8
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 3.8e-127 459.1 509 53.6
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 8.4e-127 458.0 511 52.8
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 8.4e-127 458.0 527 52.8
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 8.4e-127 458.0 527 52.8
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 8.4e-127 458.0 511 52.8
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 3.2e-126 456.1 507 52.9
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 2.1e-125 453.4 503 52.9
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 4.6e-125 452.2 511 52.4
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 4.6e-125 452.2 511 52.4
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 4.6e-125 452.2 511 52.4
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 7.9e-125 451.4 505 53.5
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.1e-123 447.6 435 56.6
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.9e-123 446.8 490 53.9
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 1.9e-123 446.8 439 55.4
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 7.4e-123 444.9 438 55.5
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.1e-121 441.0 457 56.5
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 6.9e-121 438.3 475 55.2
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 6.5e-119 431.8 519 50.1
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 3.2e-118 429.5 451 51.2
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.1e-118 428.3 573 47.6
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 2.7e-117 426.4 480 53.1
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.0e-116 424.5 427 54.6
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 1.1e-113 414.5 368 58.7
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 6.7e-108 395.2 499 45.5
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 3.3e-107 392.9 440 49.1
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 7.4e-107 391.7 454 52.9
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.8e-105 387.1 446 48.0
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.0e-103 381.3 447 47.0
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.0e-103 381.3 467 48.8
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.6e-101 374.0 530 43.4
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 6.1e-101 372.1 564 46.8
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 1.0e-100 371.3 379 55.7
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.0e-100 371.3 437 51.7
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.5e-99 367.5 369 55.8
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 5.7e-99 365.5 471 48.4
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 3.1e-97 359.8 355 55.5
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.6e-96 356.7 504 47.6
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.4e-89 333.6 438 47.7
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 2.2e-87 327.0 462 45.5
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 7.2e-86 322.0 419 48.4
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 3.6e-85 319.7 423 45.6
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 3.6e-85 319.7 418 50.0
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 3.6e-85 319.7 380 48.7
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 2.4e-81 307.0 422 47.6
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 3.2e-78 296.6 408 46.3
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.0e-76 289.7 245 65.7
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.7e-74 283.1 277 59.2
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.7e-74 283.1 316 55.1
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 1.8e-73 280.8 315 54.0
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 3.3e-70 270.0 319 49.8
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 9.5e-70 268.5 382 45.5
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.5e-67 261.2 230 61.7
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 1.3e-66 258.1 281 56.6
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 8.3e-66 255.4 411 41.1
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 2.4e-65 253.8 145 83.4
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.0e-55 221.9 456 34.2
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.7e-50 204.5 224 55.8
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 4.1e-49 199.9 261 51.0
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 7.1e-49 199.1 140 60.7
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 7.3e-46 189.1 100 85.0
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 3.7e-42 176.8 135 59.3
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.4e-41 174.1 210 48.6
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 9.6e-38 162.2 367 31.6
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 6.9e-28 129.4 437 28.1
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.8e-20 104.8 75 72.0
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 2.1e-16 91.3 50 84.0
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 5.1e-15 86.7 47 83.0
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 4.0e-12 77.0 106 44.3
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 5.3e-12 76.6 165 40.6
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.5e-11 75.1 63 54.0
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.2e-10 71.2 153 32.0
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.8e-10 70.5 39 82.1
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 6.5e-10 69.7 42 78.6
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 1.2e-08 65.5 41 75.6
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 2.3e-07 61.2 106 38.7


User provided reference genes

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