Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045617 Camellia sinensis var. sinensis HOM05D007812 ORTHO05D009912 6.7e-26 120.2 72 100.0
CiPaw.02G139600 Carya illinoinensis HOM05D007812 ORTHO05D009912 5.0e-13 77.4 51 92.2
Cfa003579 Carpinus fangiana HOM05D007812 ORTHO05D009912 1.4e-12 75.9 51 90.2
PGR102G2903 Punica granatum HOM05D007812 ORTHO05D009912 2.1e-11 72.0 53 79.2
BcaB06g25431 Brassica carinata HOM05D007812 ORTHO05D009912 3.6e-11 71.2 53 79.2
A05p35560 Brassica napus HOM05D007812 ORTHO05D009912 3.6e-11 71.2 53 79.2
C05p53950 Brassica napus HOM05D007812 ORTHO05D009912 3.6e-11 71.2 53 79.2
BolC5t34061H Brassica oleracea HOM05D007812 ORTHO05D009912 3.6e-11 71.2 53 79.2
BraA05t22365Z Brassica rapa HOM05D007812 ORTHO05D009912 3.6e-11 71.2 53 79.2
Thhalv10021887m.g Eutrema salsugineum HOM05D007812 ORTHO05D009912 3.6e-11 71.2 53 79.2
Sp3g12050 Schrenkiella parvula HOM05D007812 ORTHO05D009912 4.6e-11 70.9 53 79.2
Potri.001G196150 Populus trichocarpa HOM05D007812 ORTHO05D009912 6.1e-11 70.5 51 82.4
Sabra03G0024000 Salix brachista HOM05D007812 ORTHO05D009912 6.1e-11 70.5 50 84.0
CARHR088620 Cardamine hirsuta HOM05D007812 ORTHO05D009912 1.0e-10 69.7 51 78.4
Cpa.g.sc25.43 Carica papaya HOM05D007812 ORTHO05D009912 1.0e-10 69.7 53 77.4
Hma1.2p1_0496F.1_g165840 Hydrangea macrophylla HOM05D007812 ORTHO05D009912 1.8e-10 68.9 51 78.4
Aa31LG10G880 Aethionema arabicum HOM05D007812 ORTHO05D009912 2.3e-10 68.6 50 80.0
Carub.0003s1338 Capsella rubella HOM05D007812 ORTHO05D009912 2.3e-10 68.6 51 78.4
CDE06G1846 Ceratophyllum demersum HOM05D007812 ORTHO05D009912 2.3e-10 68.6 53 81.1
Manes.11G025800 Manihot esculenta HOM05D007812 ORTHO05D009912 2.3e-10 68.6 53 75.5
MBI01_g09945_MAGBIO Magnolia biondii HOM05D007812 ORTHO05D009912 3.0e-10 68.2 50 80.0
TPR.G19291 Trifolium pratense HOM05D007812 ORTHO05D009912 5.1e-10 67.4 53 77.4
Haze_15960 Corylus avellana HOM05D007812 ORTHO05D009912 6.7e-10 67.0 43 93.0
ECA247G3511 Erigeron canadensis HOM05D007812 ORTHO05D009912 1.1e-09 66.2 50 80.0
Ca_23324_v3 Cicer arietinum L. HOM05D007812 ORTHO05D009912 1.5e-09 65.9 42 90.5
DCAR_016154 Daucus carota HOM05D007812 ORTHO05D009912 1.5e-09 65.9 50 82.0
Zm00001eb270650 Zea mays HOM05D007812 ORTHO05D009912 2.0e-09 65.5 51 78.4
Atru.chr1.3756 Acer truncatum HOM05D007812 ORTHO05D009912 2.5e-09 65.1 48 79.2
Lj3g0001021 Lotus japonicus HOM05D007812 ORTHO05D009912 3.3e-09 64.7 42 85.7
PSO210G6368 Papaver somniferum HOM05D007812 ORTHO05D009912 5.7e-09 63.9 51 74.5
QL05p012120 Quercus lobata HOM05D007812 ORTHO05D009912 5.7e-09 63.9 42 88.1
Cc04_g01890 Coffea canephora HOM05D007812 ORTHO05D009912 9.7e-09 63.2 40 92.5
Medtr8g017190 Medicago truncatula HOM05D007812 ORTHO05D009912 9.7e-09 63.2 41 87.8
RcHm_v2.0_Chr2g0143441 Rosa chinensis HOM05D007812 ORTHO05D009912 9.7e-09 63.2 43 83.7
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 1.3e-08 62.8 40 92.5
SalBow7G0845 Salvia bowleyana HOM05D007812 ORTHO05D009912 1.3e-08 62.8 41 87.8
Sed0004047 Sechium edule HOM05D007812 ORTHO05D009912 2.8e-08 61.6 41 87.8
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 3.7e-08 61.2 42 85.7
COL.COLO4_30669 Corchorus olitorius HOM05D007812 ORTHO05D009912 3.7e-08 61.2 42 83.3
AL3G25990 Arabidopsis lyrata HOM05D007812 ORTHO05D009912 4.8e-08 60.8 43 81.4
AT3G13845 Arabidopsis thaliana HOM05D007812 ORTHO05D009912 4.8e-08 60.8 43 81.4
Migut.D00965 Erythranthe guttata HOM05D007812 ORTHO05D009912 4.8e-08 60.8 43 83.7
Lalb_Chr04g0263241 Lupinus albus HOM05D007812 ORTHO05D009912 4.8e-08 60.8 41 87.8
Potri.003G037100 Populus trichocarpa HOM05D007812 ORTHO05D009912 6.3e-08 60.5 51 74.5
Nitab4.5_0000174g0150 Nicotiana tabacum HOM05D007812 ORTHO05D009912 8.2e-08 60.1 51 74.5
Nitab4.5_0001087g0010 Nicotiana tabacum HOM05D007812 ORTHO05D009912 8.2e-08 60.1 51 74.5
arahy.Tifrunner.gnm1.ann1.X39S4K Arachis hypogaea HOM05D007812 ORTHO05D009912 1.1e-07 59.7 39 89.7
Ah.08g216270 Amaranthus hybridus HOM05D007812 ORTHO05D009912 1.4e-07 59.3 38 86.8
PGSC0003DMG400024854 Solanum tuberosum HOM05D007812 ORTHO05D009912 1.4e-07 59.3 40 82.5
Eucgr.J02853 Eucalyptus grandis HOM05D007812 ORTHO05D009912 1.8e-07 58.9 40 85.0
Psat4g188240 Pisum sativum HOM05D007812 ORTHO05D009912 1.8e-07 58.9 39 82.1
FAN09G2870 Fragaria x ananassa HOM05D007812 ORTHO05D009912 2.4e-07 58.5 42 81.0
Sopen04g026470 Solanum pennellii HOM05D007812 ORTHO05D009912 2.4e-07 58.5 38 86.8
CAN.G1040.8 Capsicum annuum HOM05D007812 ORTHO05D009912 3.1e-07 58.2 38 86.8
TWI31G1317 Tripterygium wilfordii HOM05D007812 ORTHO05D009912 3.1e-07 58.2 37 86.5
Peaxi162Scf00066g01714 Petunia axillaris HOM05D007812 ORTHO05D009912 4.1e-07 57.8 38 84.2
Sc15g0000160 Simmondsia chinensis HOM05D007812 ORTHO05D009912 4.1e-07 57.8 38 84.2
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 5.3e-07 57.4 36 88.9
CsaV3_7G034750 Cucumis sativus L. HOM05D007812 ORTHO05D009912 6.9e-07 57.0 36 86.1
Nn8g38844 Nelumbo nucifera HOM05D007812 ORTHO05D009912 6.9e-07 57.0 36 86.1
Phvul.010G138300 Phaseolus vulgaris HOM05D007812 ORTHO05D009912 6.9e-07 57.0 53 69.8
Ah.03g142930 Amaranthus hybridus HOM05D007812 ORTHO05D009912 9.1e-07 56.6 53 64.2
THA.LOC104822637 Tarenaya hassleriana HOM05D007812 ORTHO05D009912 9.1e-07 56.6 37 83.8
Gohir.A05G135100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 1.2e-06 56.2 37 83.8
Gohir.D05G137100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 1.2e-06 56.2 37 83.8
Gorai.009G141500 Gossypium raimondii HOM05D007812 ORTHO05D009912 1.2e-06 56.2 37 83.8
Ciclev10026913m.g Citrus clementina HOM05D007812 ORTHO05D009912 2.6e-06 55.1 36 80.6
Hund18713 Selenicereus undatus HOM05D007812 ORTHO05D009912 2.6e-06 55.1 37 83.8
Thecc.06G112400 Theobroma cacao HOM05D007812 ORTHO05D009912 2.6e-06 55.1 36 80.6
Glyma.07G009200 Glycine max HOM05D007812 ORTHO05D009912 3.4e-06 54.7 35 82.9
PGSC0003DMG400004846 Solanum tuberosum HOM05D007812 ORTHO05D009912 4.5e-06 54.3 48 68.8
Nitab4.5_0000255g0170 Nicotiana tabacum HOM05D007812 ORTHO05D009912 5.9e-06 53.9 53 64.2
ATR0716G008 Amborella trichopoda HOM05D007812 ORTHO05D009912 7.7e-06 53.5 51 64.7


User provided reference genes

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