Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045607 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D005105 8.1e-95 350.5 193 100.0
Hma1.2p1_0065F.1_g035150 Hydrangea macrophylla HOM05D001361 ORTHO05D005105 7.2e-51 204.5 215 58.6
Rhsim12G0024000 Rhododendron simsii HOM05D001361 ORTHO05D005105 7.2e-51 204.5 183 68.9
Actinidia30631 Actinidia chinensis HOM05D001361 ORTHO05D005105 5.2e-49 198.4 214 59.8
Dinv17585 Davidia involucrata HOM05D001361 ORTHO05D005105 1.5e-48 196.8 216 58.8
Actinidia39801 Actinidia chinensis HOM05D001361 ORTHO05D005105 1.6e-45 186.8 216 57.4
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 2.7e-45 186.0 228 55.3
Lj3C1072T8 Lonicera japonica HOM05D001361 ORTHO05D005105 4.9e-39 165.2 200 56.0
Oeu000753.1 Olea europaea HOM05D001361 ORTHO05D005105 1.1e-38 164.1 191 56.5
TAR629G2391 Trochodendron aralioides HOM05D001361 ORTHO05D005105 3.5e-37 159.1 219 49.3
Lj6A829G28 Lonicera japonica HOM05D001361 ORTHO05D005105 1.5e-35 153.7 216 48.6
Sopen05g011440 Solanum pennellii HOM05D001361 ORTHO05D005105 1.5e-35 153.7 216 47.7
vmacro01051 Vaccinium macrocarpon HOM05D001361 ORTHO05D005105 1.5e-35 153.7 221 50.2
Solyc05g015820.4 Solanum lycopersicum HOM05D001361 ORTHO05D005105 1.2e-34 150.6 216 47.2
Peaxi162Scf00023g02226 Petunia axillaris HOM05D001361 ORTHO05D005105 2.1e-34 149.8 202 52.5
Nn3g16410 Nelumbo nucifera HOM05D001361 ORTHO05D005105 8.0e-34 147.9 232 44.8
Peaxi162Scf00128g01540 Petunia axillaris HOM05D001361 ORTHO05D005105 4.0e-33 145.6 216 48.1
CAN.G1358.16 Capsicum annuum HOM05D001361 ORTHO05D005105 2.6e-32 142.9 216 45.8
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 2.6e-32 142.9 203 47.8
Nn4g22268 Nelumbo nucifera HOM05D001361 ORTHO05D005105 2.6e-32 142.9 218 48.2
MBI11_g05341_MAGBIO Magnolia biondii HOM05D001361 ORTHO05D005105 4.4e-32 142.1 178 50.6
Migut.K00986 Erythranthe guttata HOM05D001361 ORTHO05D005105 1.7e-31 140.2 221 48.0
SGA_v2.0_scaffold114G31917 Striga asiatica HOM05D001361 ORTHO05D005105 1.7e-31 140.2 221 48.0
GSVIVG01010524001 Vitis vinifera HOM05D001361 ORTHO05D005105 1.7e-31 140.2 217 47.5
DCAR_024667 Daucus carota HOM05D001361 ORTHO05D005105 5.4e-30 135.2 216 44.0
Oeu004465.2 Olea europaea HOM05D001361 ORTHO05D005105 2.0e-29 133.3 189 50.3
MSTRG.8019 Avicennia marina HOM05D001361 ORTHO05D005105 5.9e-29 131.7 220 44.5
SGA_v2.0_scaffold7G04048 Striga asiatica HOM05D001361 ORTHO05D005105 1.1e-27 127.5 225 44.4
Cfa009384 Carpinus fangiana HOM05D001361 ORTHO05D005105 3.3e-27 125.9 233 40.8
Nitab4.5_0008235g0020 Nicotiana tabacum HOM05D001361 ORTHO05D005105 4.3e-27 125.6 222 41.9
Duzib251G0004 Durio zibethinus HOM05D001361 ORTHO05D005105 2.1e-26 123.2 205 43.9
TWI36G1404 Tripterygium wilfordii HOM05D001361 ORTHO05D005105 2.8e-26 122.9 207 43.5
TWI75G0976 Tripterygium wilfordii HOM05D001361 ORTHO05D005105 1.0e-25 120.9 186 46.8
Thecc.02G202500 Theobroma cacao HOM05D001361 ORTHO05D005105 1.4e-25 120.6 204 44.6
TAR371G0443 Trochodendron aralioides HOM05D001361 ORTHO05D005105 4.0e-25 119.0 141 55.3
CDE02G3199 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 8.9e-25 117.9 208 39.9
QL03p029172 Quercus lobata HOM05D001361 ORTHO05D005105 7.5e-24 114.8 232 41.8
Aqoxy5G03301 Aquilegia oxysepala HOM05D001361 ORTHO05D005105 1.1e-22 110.9 215 39.5
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 1.2e-21 107.5 228 42.1
Nitab4.5_0010664g0010 Nicotiana tabacum HOM05D001361 ORTHO05D005105 1.0e-20 104.4 217 39.6
ClCG06G002090 Citrullus lanatus HOM05D001361 ORTHO05D005105 2.3e-20 103.2 181 44.8
Gorai.012G180700 Gossypium raimondii HOM05D001361 ORTHO05D005105 3.0e-20 102.8 205 43.4
CDE06G0592 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 5.0e-20 102.1 183 41.5
Duzib268G1250 Durio zibethinus HOM05D001361 ORTHO05D005105 6.6e-20 101.7 207 39.1
Gohir.A04G141200 Gossypium hirsutum HOM05D001361 ORTHO05D005105 6.6e-20 101.7 140 48.6
Cpa.g.sc200.23 Carica papaya HOM05D001361 ORTHO05D005105 1.9e-19 100.1 212 40.6
CDE05G0317 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 2.5e-19 99.8 198 36.4
Gohir.D04G187700 Gossypium hirsutum HOM05D001361 ORTHO05D005105 2.5e-19 99.8 205 42.4
THA.LOC104825490 Tarenaya hassleriana HOM05D001361 ORTHO05D005105 5.6e-19 98.6 216 39.4
MSTRG.486 Avicennia marina HOM05D001361 ORTHO05D005105 7.3e-19 98.2 222 40.5
CiPaw.05G107400 Carya illinoinensis HOM05D001361 ORTHO05D005105 1.6e-18 97.1 231 36.4
Ah.02g130800 Amaranthus hybridus HOM05D001361 ORTHO05D005105 2.1e-18 96.7 235 35.3
Atru.chr11.2355 Acer truncatum HOM05D001361 ORTHO05D005105 6.2e-18 95.1 217 35.9
Sc04g0010260 Simmondsia chinensis HOM05D001361 ORTHO05D005105 1.1e-17 94.4 229 34.1
Gohir.D02G146800 Gossypium hirsutum HOM05D001361 ORTHO05D005105 1.4e-17 94.0 207 38.2
ATR0561G106 Amborella trichopoda HOM05D001361 ORTHO05D005105 1.8e-17 93.6 215 39.5
Gohir.A03G124400 Gossypium hirsutum HOM05D001361 ORTHO05D005105 2.3e-17 93.2 207 38.2
MD16G1122300 Malus domestica HOM05D001361 ORTHO05D005105 2.3e-17 93.2 202 40.6
Duzib248G0082 Durio zibethinus HOM05D001361 ORTHO05D005105 1.5e-16 90.5 207 37.7
Ciclev10031908m.g Citrus clementina HOM05D001361 ORTHO05D005105 3.4e-16 89.4 195 39.5
Gorai.005G164400 Gossypium raimondii HOM05D001361 ORTHO05D005105 5.8e-16 88.6 206 36.9
COL.COLO4_20443 Corchorus olitorius HOM05D001361 ORTHO05D005105 9.8e-16 87.8 177 42.4
HanXRQChr12g0361331 Helianthus annuus HOM05D001361 ORTHO05D005105 1.3e-15 87.4 214 39.3
SEGI_31967 Sequoiadendron giganteum HOM05D001361 ORTHO05D005105 1.7e-15 87.0 225 38.2
Potri.001G058700 Populus trichocarpa HOM05D001361 ORTHO05D005105 4.9e-15 85.5 212 38.7
PGR102G1867 Punica granatum HOM05D001361 ORTHO05D005105 6.4e-15 85.1 202 38.6
FAN12G2218 Fragaria x ananassa HOM05D001361 ORTHO05D005105 1.4e-14 84.0 175 39.4
MD13G1122000 Malus domestica HOM05D001361 ORTHO05D005105 1.4e-14 84.0 203 38.4
Actinidia08055 Actinidia chinensis HOM05D001361 ORTHO05D005105 3.2e-14 82.8 110 50.9
arahy.Tifrunner.gnm1.ann1.M9HGBQ Arachis hypogaea HOM05D001361 ORTHO05D005105 3.2e-14 82.8 178 37.6
arahy.Tifrunner.gnm1.ann1.WMQ7N5 Arachis hypogaea HOM05D001361 ORTHO05D005105 3.2e-14 82.8 178 37.6
Potri.003G169200 Populus trichocarpa HOM05D001361 ORTHO05D005105 4.1e-14 82.4 204 37.3
THA.LOC104807139 Tarenaya hassleriana HOM05D001361 ORTHO05D005105 5.4e-14 82.0 205 38.5
Hund25479 Selenicereus undatus HOM05D001361 ORTHO05D005105 2.1e-13 80.1 197 35.5
C05p25950 Brassica napus HOM05D001361 ORTHO05D005105 2.7e-13 79.7 206 37.4
CANSAT01G0548 Cannabis sativa HOM05D001361 ORTHO05D005105 2.7e-13 79.7 144 42.4
Glyma.08G259700 Glycine max HOM05D001361 ORTHO05D005105 2.7e-13 79.7 204 35.8
BcaC05g26539 Brassica carinata HOM05D001361 ORTHO05D005105 3.5e-13 79.3 206 36.9
FAN17G0717 Fragaria x ananassa HOM05D001361 ORTHO05D005105 3.5e-13 79.3 175 40.6
CARHR026840 Cardamine hirsuta HOM05D001361 ORTHO05D005105 4.6e-13 79.0 205 34.1
A09p38680 Brassica napus HOM05D001361 ORTHO05D005105 7.8e-13 78.2 206 36.4
FAN07G0196 Fragaria x ananassa HOM05D001361 ORTHO05D005105 7.8e-13 78.2 175 37.1
Manes.13G009200 Manihot esculenta HOM05D001361 ORTHO05D005105 1.0e-12 77.8 168 38.7
Actinidia08057 Actinidia chinensis HOM05D001361 ORTHO05D005105 1.3e-12 77.4 89 57.3
Aa31LG7G9930 Aethionema arabicum HOM05D001361 ORTHO05D005105 1.3e-12 77.4 178 35.4
EL10Ac6g15295 Beta vulgaris HOM05D001361 ORTHO05D005105 1.3e-12 77.4 228 32.0
CsaV3_6G008160 Cucumis sativus L. HOM05D001361 ORTHO05D005105 1.3e-12 77.4 219 35.6
Oeu006513.1 Olea europaea HOM05D001361 ORTHO05D005105 1.3e-12 77.4 57 68.4
Sabra01G0042200 Salix brachista HOM05D001361 ORTHO05D005105 1.3e-12 77.4 230 34.8
MELO3C022320.2 Cucumis melo HOM05D001361 ORTHO05D005105 1.7e-12 77.0 217 35.9
Manes.12G008800 Manihot esculenta HOM05D001361 ORTHO05D005105 1.7e-12 77.0 179 38.5
ECA246G4360 Erigeron canadensis HOM05D001361 ORTHO05D005105 2.3e-12 76.6 184 37.0
Sp1g23500 Schrenkiella parvula HOM05D001361 ORTHO05D005105 2.3e-12 76.6 206 36.9
Cc11_g17160 Coffea canephora HOM05D001361 ORTHO05D005105 3.9e-12 75.9 199 39.7
BcaC05g26733 Brassica carinata HOM05D001361 ORTHO05D005105 1.1e-11 74.3 206 36.4
Cpa.g.sc43.84 Carica papaya HOM05D001361 ORTHO05D005105 1.1e-11 74.3 89 51.7
Lsat_1_v5_gn_3_31340 Lactuca sativa HOM05D001361 ORTHO05D005105 1.1e-11 74.3 168 39.3
RcHm_v2.0_Chr4g0429881 Rosa chinensis HOM05D001361 ORTHO05D005105 1.1e-11 74.3 202 35.1
BcaB03g12068 Brassica carinata HOM05D001361 ORTHO05D005105 1.5e-11 73.9 206 35.9
Lj5g0005237 Lotus japonicus HOM05D001361 ORTHO05D005105 1.5e-11 73.9 230 32.6
Carub.0001s2579 Capsella rubella HOM05D001361 ORTHO05D005105 2.5e-11 73.2 203 34.0
BolC5t31314H Brassica oleracea HOM05D001361 ORTHO05D005105 3.3e-11 72.8 209 36.4
AL1G40660 Arabidopsis lyrata HOM05D001361 ORTHO05D005105 4.3e-11 72.4 205 34.6
Eucgr.B03519 Eucalyptus grandis HOM05D001361 ORTHO05D005105 5.6e-11 72.0 211 35.5
BraA08t34597Z Brassica rapa HOM05D001361 ORTHO05D005105 7.3e-11 71.6 198 35.9
Lalb_Chr17g0336401 Lupinus albus HOM05D001361 ORTHO05D005105 7.3e-11 71.6 223 35.0
BolC3t19653H Brassica oleracea HOM05D001361 ORTHO05D005105 9.5e-11 71.2 193 36.3
Carub.0001s2580 Capsella rubella HOM05D001361 ORTHO05D005105 9.5e-11 71.2 206 32.0
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 4.7e-10 68.9 206 32.0
EL10Ac6g13534 Beta vulgaris HOM05D001361 ORTHO05D005105 8.1e-10 68.2 138 34.8
Glyma.18G283800 Glycine max HOM05D001361 ORTHO05D005105 8.1e-10 68.2 223 30.9
HPP92_008062 Vanilla planifolia HOM05D001361 ORTHO05D005105 8.1e-10 68.2 208 33.7
Sed0016155 Sechium edule HOM05D001361 ORTHO05D005105 1.4e-09 67.4 208 32.2
Phvul.008G017700 Phaseolus vulgaris HOM05D001361 ORTHO05D005105 3.1e-09 66.2 217 30.9
AT1G24265 Arabidopsis thaliana HOM05D001361 ORTHO05D005105 4.0e-09 65.9 205 31.7
CAN.G416.38 Capsicum annuum HOM05D001361 ORTHO05D005105 5.2e-09 65.5 211 31.8
unitig_747.g21121 Utricularia gibba HOM05D001361 ORTHO05D005105 6.8e-09 65.1 172 35.5
BraA09t39376Z Brassica rapa HOM05D001361 ORTHO05D005105 2.6e-08 63.2 210 34.8
HPP92_008065 Vanilla planifolia HOM05D001361 ORTHO05D011648 3.4e-08 62.8 181 30.4
Thhalv10008045m.g Eutrema salsugineum HOM05D001361 ORTHO05D005105 4.4e-08 62.4 208 34.1
HanXRQChr05g0128771 Helianthus annuus HOM05D001361 ORTHO05D005105 5.8e-08 62.0 168 35.1
Zm00001eb285600 Zea mays HOM05D001361 ORTHO05D005105 5.8e-08 62.0 130 34.6
BcaC01g01627 Brassica carinata HOM05D001361 ORTHO05D005105 9.9e-08 61.2 203 34.0
C03p73600 Brassica napus HOM05D001361 ORTHO05D005105 9.9e-08 61.2 203 34.0
FvH4_4g23490 Fragaria vesca HOM05D001361 ORTHO05D005105 1.3e-07 60.8 196 33.7
Os01g0100800 Oryza sativa ssp. japonica HOM05D001361 ORTHO05D005105 1.3e-07 60.8 188 31.4
Lalb_Chr10g0092051 Lupinus albus HOM05D001361 ORTHO05D005105 1.7e-07 60.5 219 31.1
A09p38670 Brassica napus HOM05D001361 ORTHO05D005105 3.7e-07 59.3 185 33.0
CBR_g31155 Chara braunii HOM05D001361 ORTHO05D002529 6.4e-07 58.5 68 39.7
Haze_12741 Corylus avellana HOM05D001361 ORTHO05D002529 1.4e-06 57.4 73 38.4
Peaxi162Scf00045g00217 Petunia axillaris HOM05D001361 ORTHO05D002529 1.4e-06 57.4 68 39.7
AT1G24267 Arabidopsis thaliana HOM05D001361 ORTHO05D005105 1.9e-06 57.0 205 31.2
MD17G1108700 Malus domestica HOM05D001361 ORTHO05D002529 1.9e-06 57.0 73 39.7
CAN.G137.6 Capsicum annuum HOM05D001361 ORTHO05D002529 2.4e-06 56.6 79 38.0
MSTRG.24843 Avicennia marina HOM05D001361 ORTHO05D002529 3.2e-06 56.2 68 38.2
MBI13_g40621_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 3.2e-06 56.2 53 52.8
Oeu017067.2 Olea europaea HOM05D001361 ORTHO05D002529 3.2e-06 56.2 68 39.7
Sed0027422 Sechium edule HOM05D001361 ORTHO05D005105 3.2e-06 56.2 251 30.3
BraA09t39375Z Brassica rapa HOM05D001361 ORTHO05D005105 5.4e-06 55.5 188 30.9
MBI16_g07774_MAGBIO Magnolia biondii HOM05D001361 ORTHO05D011648 5.4e-06 55.5 65 46.2
Zm00001eb316450 Zea mays HOM05D001361 ORTHO05D002529 5.4e-06 55.5 68 38.2
Migut.E00752 Erythranthe guttata HOM05D001361 ORTHO05D002529 7.1e-06 55.1 79 36.7
Prupe.3G206300 Prunus persica HOM05D001361 ORTHO05D002529 7.1e-06 55.1 73 37.0
Hma1.2p1_0341F.1_g130600 Hydrangea macrophylla HOM05D001361 ORTHO05D002529 9.2e-06 54.7 79 38.0


User provided reference genes

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