Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 0.0e+00 1088.2 528 100.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 5.6e-247 857.4 535 78.3
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 9.0e-237 823.5 536 75.0
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 8.7e-232 807.0 542 72.5
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.6e-230 802.7 527 72.1
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.2e-227 792.3 535 71.6
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.7e-225 785.4 528 71.8
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.1e-221 771.9 541 70.1
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.7e-219 766.1 535 69.7
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 8.4e-219 763.8 535 67.7
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 9.3e-218 760.4 532 69.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.5e-215 753.1 535 68.4
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.8e-213 746.1 534 67.6
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 2.2e-211 739.2 534 67.4
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.1e-210 736.9 533 67.0
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 4.2e-210 734.9 567 63.8
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 2.3e-208 729.2 530 66.6
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.9e-208 728.4 524 67.9
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 5.7e-207 724.5 530 66.4
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 9.7e-207 723.8 535 66.0
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.3e-206 723.4 532 65.6
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.2e-206 722.6 530 66.2
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.8e-206 722.2 535 65.4
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 8.2e-206 720.7 529 65.4
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.2e-204 716.8 533 65.9
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.3e-203 713.4 534 65.2
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.7e-203 713.0 535 64.7
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.7e-203 713.0 535 64.7
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.2e-203 712.6 528 65.2
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.9e-203 712.2 525 66.5
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 3.8e-203 711.8 536 65.7
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 1.4e-202 709.9 536 65.3
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 3.2e-202 708.8 540 64.4
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 3.2e-202 708.8 534 65.7
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 5.5e-202 708.0 535 64.1
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.2e-201 706.8 534 65.5
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.6e-201 706.4 534 64.4
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.6e-201 705.3 549 63.0
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.4e-200 703.4 549 62.7
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.3e-200 702.6 534 64.6
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 3.9e-200 701.8 536 63.1
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.0e-199 699.5 536 64.6
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.3e-199 698.7 529 63.7
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 7.4e-199 697.6 529 63.7
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.2e-198 696.0 538 64.7
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 8.2e-198 694.1 532 64.8
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.0e-195 687.2 523 64.1
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.2e-195 686.0 557 61.6
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.1e-194 683.7 531 64.0
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 3.2e-194 682.2 516 65.1
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 3.2e-194 682.2 536 63.1
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 3.2e-194 682.2 537 62.9
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 4.2e-194 681.8 535 61.5
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 7.2e-194 681.0 560 60.9
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.4e-194 680.6 565 61.2
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.2e-193 680.2 535 63.2
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.2e-193 680.2 532 62.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.8e-192 676.4 523 63.5
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.8e-192 676.4 549 62.1
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.3e-192 676.0 534 62.0
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 5.2e-192 674.9 529 63.1
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.5e-191 673.3 536 61.4
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 3.3e-191 672.2 535 62.1
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 7.4e-191 671.0 535 62.4
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 7.4e-191 671.0 530 59.8
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.3e-190 670.2 534 60.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.2e-190 669.5 536 62.1
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 6.3e-190 667.9 535 61.7
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.1e-189 667.2 540 60.7
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.1e-189 665.6 535 62.1
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 4.5e-188 661.8 526 61.6
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 7.7e-188 661.0 531 62.3
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 3.8e-187 658.7 534 59.4
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 3.8e-187 658.7 540 60.2
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 5.0e-187 658.3 535 61.9
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 8.5e-187 657.5 537 61.8
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.5e-186 656.0 535 61.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 6.1e-185 651.4 536 61.6
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 4.0e-184 648.7 532 60.9
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.5e-183 646.7 531 61.2
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.1e-181 640.6 548 58.8
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.2e-178 629.0 580 57.2
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 5.5e-178 628.2 536 58.0
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 2.7e-177 625.9 525 58.5
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.0e-176 622.5 537 59.6
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 4.8e-174 615.1 529 58.2
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.2e-170 602.1 536 54.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.5e-167 593.6 536 54.7
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 5.9e-164 581.6 699 46.9
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.0e-163 580.9 545 53.2
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.6e-162 575.1 533 55.3
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.7e-161 572.0 539 51.4
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.0e-160 570.9 538 50.7
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.1e-160 569.3 528 56.4
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.5e-159 567.0 539 51.2
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.6e-159 566.2 538 50.2
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 4.4e-159 565.5 528 56.2
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.3e-158 563.9 539 50.8
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.3e-158 563.9 539 51.6
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-157 560.8 536 50.9
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.5e-156 555.8 568 51.8
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 4.6e-156 555.4 538 51.1
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.7e-155 553.5 540 50.2
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.7e-155 553.5 536 51.9
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.7e-155 553.5 542 54.1
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.5e-154 550.4 571 50.6
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.5e-154 550.4 535 51.2
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 3.3e-154 549.3 536 51.7
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 7.3e-154 548.1 527 51.8
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 4.7e-153 545.4 543 50.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 6.2e-153 545.0 535 50.8
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.4e-152 543.9 533 50.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.8e-152 543.5 537 50.7
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 8.9e-152 541.2 533 50.3
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 8.9e-152 541.2 533 50.3
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 8.9e-152 541.2 544 50.2
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.7e-150 537.0 541 50.1
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-150 536.6 537 50.8
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.7e-150 535.8 533 50.7
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.1e-149 532.3 534 49.6
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.6e-148 530.4 527 53.3
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.1e-148 530.0 541 48.1
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.0e-147 526.2 551 48.1
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 4.4e-143 512.3 505 52.7
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.3e-142 510.8 536 49.6
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 7.8e-140 501.5 583 45.5
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 3.3e-138 496.1 513 52.0
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 2.3e-131 473.4 526 47.1
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 8.1e-129 464.9 545 45.3
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.1e-128 464.5 533 44.8
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.1e-120 438.0 396 54.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 6.4e-118 428.7 406 55.9
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 6.0e-116 422.2 535 43.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 3.8e-110 402.9 533 43.7
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 4.3e-106 389.4 251 71.3
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.4e-104 384.4 194 90.2
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.3e-99 367.9 463 43.2
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 5.7e-90 335.9 330 54.2
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.9e-86 323.6 548 34.9
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 4.2e-85 319.7 543 35.4
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.6e-82 310.5 570 34.2
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.5e-77 293.9 261 54.8
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-72 277.3 215 60.5
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.2e-63 248.4 264 47.3
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 4.7e-60 236.5 255 51.0
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 7.0e-56 222.6 239 48.1
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 7.2e-53 212.6 127 74.0
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 5.7e-50 203.0 217 44.7
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 3.2e-48 197.2 215 49.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 4.5e-47 193.4 181 55.8
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.6e-45 186.4 129 65.1
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.0e-42 177.9 391 30.9
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.7e-39 167.5 277 39.4
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.5e-29 135.2 252 33.3
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.5e-26 125.2 160 41.2
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.5e-26 125.2 178 40.4
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.8e-26 123.2 118 50.0
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 4.9e-25 120.2 255 30.2
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 7.1e-24 116.3 145 40.7
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 3.0e-22 110.9 243 34.2
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.5e-21 107.8 204 34.8
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-17 94.0 59 69.5
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 6.2e-12 76.6 48 66.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 6.2e-12 76.6 48 66.7
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 6.9e-11 73.2 38 78.9


User provided reference genes

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