Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1538.1 822 100.0
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1491.9 822 97.6
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1255.0 823 81.4
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1235.3 787 84.2
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1208.7 823 78.6
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1195.3 822 76.3
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 0.0e+00 1189.1 824 77.7
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1179.9 823 76.2
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1159.4 859 73.1
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1159.1 820 75.9
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1156.7 823 74.8
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1154.8 823 74.8
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1153.3 823 75.3
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1144.4 845 72.9
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1144.0 822 73.7
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 0.0e+00 1142.5 818 75.4
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1140.6 822 74.3
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1137.5 821 73.8
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1135.6 821 74.4
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 0.0e+00 1135.2 821 74.3
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1133.6 821 74.3
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1129.4 822 72.3
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 0.0e+00 1128.2 757 79.3
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1127.9 822 72.1
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1125.9 821 73.1
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1125.2 822 72.4
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1124.8 820 73.0
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1124.8 820 72.9
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1124.4 824 73.4
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 0.0e+00 1123.2 816 73.2
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1120.9 823 73.3
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1120.9 822 72.9
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 0.0e+00 1115.5 830 72.7
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 0.0e+00 1114.8 823 73.3
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1106.7 829 71.0
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 0.0e+00 1101.3 822 72.9
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 0.0e+00 1100.1 823 72.1
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 0.0e+00 1099.3 844 71.0
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 0.0e+00 1099.0 820 72.1
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 0.0e+00 1095.5 821 71.5
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1093.6 825 70.3
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 0.0e+00 1092.4 834 71.5
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 0.0e+00 1088.9 821 72.2
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 0.0e+00 1088.2 822 71.4
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 0.0e+00 1087.0 789 74.5
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 0.0e+00 1078.5 823 69.7
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 0.0e+00 1077.8 758 76.5
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 5.6e-312 1074.7 849 69.6
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 1.1e-310 1069.7 818 70.7
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 1.1e-310 1069.7 823 69.9
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 3.3e-310 1068.1 824 71.1
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 4.3e-310 1067.8 824 69.7
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 7.3e-310 1067.0 821 70.6
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 6.8e-308 1060.4 821 69.4
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 3.7e-306 1054.7 818 68.7
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 2.4e-305 1052.0 820 69.8
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 4.1e-305 1051.2 818 68.1
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 7.0e-305 1050.4 818 68.5
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 9.2e-305 1050.0 826 69.2
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 1.2e-304 1049.7 821 68.8
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 3.5e-304 1048.1 823 69.6
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 5.0e-303 1044.3 821 67.8
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 1.6e-301 1039.3 821 68.5
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 6.8e-300 1033.9 897 64.8
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 8.3e-298 1026.9 815 67.6
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 1.4e-297 1026.2 821 68.2
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 6.0e-296 1020.8 821 67.8
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 5.0e-295 1017.7 820 67.6
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 8.6e-295 1016.9 816 67.8
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 4.3e-294 1014.6 922 62.1
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 4.3e-294 1014.6 821 66.1
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 1.6e-293 1012.7 821 65.9
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 8.1e-293 1010.4 821 65.7
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 1.1e-292 1010.0 821 66.1
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 8.9e-292 1006.9 821 65.9
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.2e-290 1002.3 832 66.6
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 3.7e-290 1001.5 822 65.8
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 5.4e-289 997.7 821 65.4
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 1.2e-288 996.5 826 66.6
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 3.5e-288 995.0 821 65.2
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 6.0e-288 994.2 861 64.5
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.0e-287 993.4 760 70.9
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 3.9e-287 991.5 821 65.2
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 6.6e-287 990.7 821 65.7
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 7.3e-286 987.3 837 64.4
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 4.7e-285 984.6 822 65.8
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.4e-284 983.0 864 63.1
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.1e-261 906.0 592 81.9
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 5.8e-259 897.9 832 59.3
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 1.4e-257 893.3 825 58.7
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 8.2e-253 877.5 821 60.2
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 2.9e-250 869.0 819 59.5
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 2.1e-248 862.8 700 67.6
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 3.3e-238 828.9 867 54.8
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 4.4e-230 802.0 668 66.0
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 3.7e-229 798.9 827 57.9
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 8.3e-189 664.8 626 60.7
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 1.2e-171 607.8 839 44.1
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 4.3e-169 599.4 801 45.7
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 2.2e-165 587.0 770 45.1
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 3.8e-165 586.3 408 77.9
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.1e-159 568.2 545 59.3
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 8.7e-154 548.5 494 61.5
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 4.9e-149 532.7 324 84.0
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 8.4e-149 531.9 859 39.9
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 3.2e-148 530.0 377 71.6
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 1.7e-141 507.7 806 39.5
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 6.4e-141 505.8 836 38.9
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.1e-127 461.8 271 87.1
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 8.0e-107 392.5 484 50.2
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.7e-104 384.8 243 88.5
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.2e-102 378.6 255 74.1
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.2e-101 374.4 275 66.5
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.7e-91 340.9 311 60.1
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 1.6e-59 235.3 811 25.9
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.7e-59 233.8 163 77.9
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 6.4e-56 223.4 353 43.3
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 3.9e-45 187.6 220 51.8
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 2.4e-42 178.3 833 22.8
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 2.4e-42 178.3 116 79.3
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.1e-39 169.5 119 72.3
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 5.3e-34 150.6 93 78.5
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 7.6e-33 146.7 216 44.9
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 7.6e-33 146.7 101 74.3
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 3.0e-29 134.8 207 40.6
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.8e-26 125.6 70 95.7
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 2.4e-26 125.2 70 85.7
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 2.4e-26 125.2 70 85.7
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 6.5e-24 117.1 123 54.5
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 1.6e-22 112.5 69 78.3
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 9.3e-15 86.7 61 73.8
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 1.8e-13 82.4 86 54.7
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 1.1e-12 79.7 185 37.3
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 1.3e-11 76.3 69 62.3
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 3.8e-08 64.7 47 70.2
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 5.5e-07 60.8 67 52.2


User provided reference genes

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