Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045593 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 7.2e-99 364.0 195 100.0
CSS0027711 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 1.8e-94 349.4 195 96.4
Cc10_g11460 Coffea canephora HOM05D004490 ORTHO05D005353 4.3e-67 258.5 219 66.2
CSS0029963 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 1.6e-66 256.5 219 70.8
Hma1.2p1_0363F.1_g136660 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 6.1e-66 254.6 219 65.8
Dinv41710 Davidia involucrata HOM05D004490 ORTHO05D005353 1.4e-65 253.4 219 64.8
DCAR_014360 Daucus carota HOM05D004490 ORTHO05D005353 3.4e-64 248.8 219 65.8
Duzib177G0006 Durio zibethinus HOM05D004490 ORTHO05D005353 5.7e-64 248.1 219 63.5
Oeu021013.3 Olea europaea HOM05D004490 ORTHO05D005353 4.9e-63 245.0 219 64.4
GSVIVG01034483001 Vitis vinifera HOM05D004490 ORTHO05D005353 4.9e-63 245.0 220 64.1
MSTRG.1522 Avicennia marina HOM05D004490 ORTHO05D005353 6.4e-63 244.6 220 63.2
Manes.02G191800 Manihot esculenta HOM05D004490 ORTHO05D005353 5.4e-62 241.5 219 61.6
ECA234G1973 Erigeron canadensis HOM05D004490 ORTHO05D005353 2.0e-61 239.6 221 62.4
Gohir.D13G125400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 3.5e-61 238.8 220 62.7
Ciclev10000724m.g Citrus clementina HOM05D004490 ORTHO05D005353 5.9e-61 238.0 222 61.3
Thecc.08G183200 Theobroma cacao HOM05D004490 ORTHO05D005353 5.9e-61 238.0 219 63.5
Cfa018184 Carpinus fangiana HOM05D004490 ORTHO05D005353 1.0e-60 237.3 219 62.1
Gohir.A13G121400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 1.3e-60 236.9 220 62.3
Cpa.g.sc66.44 Carica papaya HOM05D004490 ORTHO05D005353 3.9e-60 235.3 220 64.5
SalBow4G3000 Salvia bowleyana HOM05D004490 ORTHO05D005353 3.9e-60 235.3 222 60.4
SalBow7G0993 Salvia bowleyana HOM05D004490 ORTHO05D005353 3.9e-60 235.3 222 60.4
arahy.Tifrunner.gnm1.ann1.2Y7GNB Arachis hypogaea HOM05D004490 ORTHO05D005353 5.0e-60 235.0 220 64.5
HanXRQChr10g0290501 Helianthus annuus HOM05D004490 ORTHO05D005353 5.0e-60 235.0 221 62.9
RcHm_v2.0_Chr4g0398261 Rosa chinensis HOM05D004490 ORTHO05D005353 1.1e-59 233.8 220 60.9
Gorai.013G140400 Gossypium raimondii HOM05D004490 ORTHO05D005353 1.9e-59 233.0 220 60.9
Lalb_Chr21g0305821 Lupinus albus HOM05D004490 ORTHO05D005353 1.9e-59 233.0 220 62.3
Migut.C01248 Erythranthe guttata HOM05D004490 ORTHO05D005353 4.3e-59 231.9 224 60.7
FAN07G2233 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.2e-58 230.3 220 60.0
FAN12G1529 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.2e-58 230.3 220 60.5
Psat6g187400 Pisum sativum HOM05D004490 ORTHO05D005353 1.2e-58 230.3 220 59.5
CiPaw.16G061300 Carya illinoinensis HOM05D004490 ORTHO05D005353 1.6e-58 229.9 220 59.5
FvH4_4g06470 Fragaria vesca HOM05D004490 ORTHO05D005353 2.1e-58 229.6 220 60.5
Ca_10614_v3 Cicer arietinum L. HOM05D004490 ORTHO05D005353 2.8e-58 229.2 220 61.4
Haze_17934 Corylus avellana HOM05D004490 ORTHO05D005353 2.8e-58 229.2 179 68.7
Eucgr.F04124 Eucalyptus grandis HOM05D004490 ORTHO05D005353 2.8e-58 229.2 218 62.8
TAR208G0002 Trochodendron aralioides HOM05D004490 ORTHO05D005353 6.2e-58 228.0 223 60.5
TWI63G0531 Tripterygium wilfordii HOM05D004490 ORTHO05D005353 8.0e-58 227.6 220 57.3
FAN17G1649 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.1e-57 227.3 220 60.0
Lj7A289G25 Lonicera japonica HOM05D004490 ORTHO05D005353 1.1e-57 227.3 239 60.3
Lj5g0002115 Lotus japonicus HOM05D004490 ORTHO05D005353 1.1e-57 227.3 220 60.0
QL02p033840 Quercus lobata HOM05D004490 ORTHO05D005353 1.1e-57 227.3 218 60.1
Atru.chr12.1269 Acer truncatum HOM05D004490 ORTHO05D005353 1.8e-57 226.5 221 59.7
Potri.019G083700 Populus trichocarpa HOM05D004490 ORTHO05D005353 1.8e-57 226.5 220 61.4
MD04G1003500 Malus domestica HOM05D004490 ORTHO05D005353 3.1e-57 225.7 220 57.3
Nn5g27710 Nelumbo nucifera HOM05D004490 ORTHO05D005353 5.2e-57 224.9 217 62.2
EL10Ac1g00080 Beta vulgaris HOM05D004490 ORTHO05D005353 1.2e-56 223.8 221 58.4
ClCG09G010540 Citrullus lanatus HOM05D004490 ORTHO05D005353 1.5e-56 223.4 220 55.9
Rhsim11G0059700 Rhododendron simsii HOM05D004490 ORTHO05D005353 5.8e-56 221.5 228 62.7
Phvul.007G089700 Phaseolus vulgaris HOM05D004490 ORTHO05D005353 9.8e-56 220.7 221 58.8
Sabra19G0095100 Salix brachista HOM05D004490 ORTHO05D005353 9.8e-56 220.7 220 60.0
MELO3C024104.2 Cucumis melo HOM05D004490 ORTHO05D005353 1.7e-55 219.9 221 57.9
Glyma.20G175700 Glycine max HOM05D004490 ORTHO05D005353 1.7e-55 219.9 221 58.4
SGA_v2.0_scaffold118G32473 Striga asiatica HOM05D004490 ORTHO05D005353 2.2e-55 219.5 211 60.7
AUR62022689 Chenopodium quinoa HOM05D004490 ORTHO05D005353 2.9e-55 219.2 221 57.9
TPR.G8816 Trifolium pratense HOM05D004490 ORTHO05D005353 2.9e-55 219.2 223 58.7
Ah.05g178090 Amaranthus hybridus HOM05D004490 ORTHO05D005353 4.9e-55 218.4 221 57.0
vmacro11670 Vaccinium macrocarpon HOM05D004490 ORTHO05D005353 4.9e-55 218.4 219 63.0
Aqoxy2G03181 Aquilegia oxysepala HOM05D004490 ORTHO05D005353 6.4e-55 218.0 219 59.8
Medtr1g096410 Medicago truncatula HOM05D004490 ORTHO05D005353 8.3e-55 217.6 180 66.7
Prupe.8G058000 Prunus persica HOM05D004490 ORTHO05D005353 8.3e-55 217.6 220 56.8
Lsat_1_v5_gn_5_105541 Lactuca sativa HOM05D004490 ORTHO05D005353 1.1e-54 217.2 222 59.9
arahy.Tifrunner.gnm1.ann1.90XUFN Arachis hypogaea HOM05D004490 ORTHO05D005353 3.2e-54 215.7 216 61.6
CANSAT64G2929 Cannabis sativa HOM05D004490 ORTHO05D005353 5.4e-54 214.9 225 56.9
CsaV3_7G024020 Cucumis sativus L. HOM05D004490 ORTHO05D005353 7.0e-54 214.5 220 55.0
Glyma.10G216200 Glycine max HOM05D004490 ORTHO05D005353 9.2e-54 214.2 224 56.2
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 3.5e-53 212.2 193 66.8
Solyc11g018670.3 Solanum lycopersicum HOM05D004490 ORTHO05D005353 6.0e-53 211.5 222 60.4
THA.LOC104816311 Tarenaya hassleriana HOM05D004490 ORTHO05D005353 3.0e-52 209.1 223 56.1
AL2G20400 Arabidopsis lyrata HOM05D004490 ORTHO05D005353 5.0e-52 208.4 225 57.3
AT1G65280 Arabidopsis thaliana HOM05D004490 ORTHO05D005353 1.1e-51 207.2 225 56.9
Thhalv10028527m.g Eutrema salsugineum HOM05D004490 ORTHO05D005353 1.5e-51 206.8 226 56.2
Os01g0521500 Oryza sativa ssp. japonica HOM05D004490 ORTHO05D005353 1.9e-51 206.5 219 58.0
Sc23g0001210 Simmondsia chinensis HOM05D004490 ORTHO05D005353 1.9e-51 206.5 227 55.1
Carub.0002s1095 Capsella rubella HOM05D004490 ORTHO05D005353 2.5e-51 206.1 225 54.7
CARHR056930 Cardamine hirsuta HOM05D004490 ORTHO05D005353 2.5e-51 206.1 225 54.7
AUR62022497 Chenopodium quinoa HOM05D004490 ORTHO05D005353 3.3e-51 205.7 180 62.8
AUR62004649 Chenopodium quinoa HOM05D004490 ORTHO05D005353 4.3e-51 205.3 184 63.6
EL10Ac1g00082 Beta vulgaris HOM05D004490 ORTHO05D005353 5.6e-51 204.9 181 61.9
FvH4_3g44892 Fragaria vesca HOM05D004490 ORTHO05D005353 5.6e-51 204.9 198 58.6
Sp6g08010 Schrenkiella parvula HOM05D004490 ORTHO05D005353 5.6e-51 204.9 227 56.4
A09p29500 Brassica napus HOM05D004490 ORTHO05D005353 9.5e-51 204.1 228 56.1
BraA09t38516Z Brassica rapa HOM05D004490 ORTHO05D005353 9.5e-51 204.1 228 56.1
BcaC04g20957 Brassica carinata HOM05D004490 ORTHO05D005353 3.6e-50 202.2 228 55.7
BolC9t56586H Brassica oleracea HOM05D004490 ORTHO05D005353 3.6e-50 202.2 228 55.7
Sopen11g009650 Solanum pennellii HOM05D004490 ORTHO05D005353 6.2e-50 201.4 222 58.6
PGR102G0893 Punica granatum HOM05D004490 ORTHO05D005353 8.1e-50 201.1 223 56.1
PSO017G7136 Papaver somniferum HOM05D004490 ORTHO05D005353 3.1e-49 199.1 219 56.2
PSO063G0599 Papaver somniferum HOM05D004490 ORTHO05D005353 4.0e-49 198.7 219 56.6
Aa31LG9G14890 Aethionema arabicum HOM05D004490 ORTHO05D005353 2.0e-48 196.4 175 63.4
BNapus_Darmor_BZH_scaffold_278p00040 Brassica napus HOM05D004490 ORTHO05D005353 2.0e-48 196.4 178 62.9
Nitab4.5_0000277g0020 Nicotiana tabacum HOM05D004490 ORTHO05D005353 5.8e-48 194.9 220 57.3
Hund27085 Selenicereus undatus HOM05D004490 ORTHO05D005353 5.8e-48 194.9 210 55.2
VMungo0720G0360 Vigna mungo HOM05D004490 ORTHO05D005353 9.9e-48 194.1 168 63.7
BcaB01g01408 Brassica carinata HOM05D004490 ORTHO05D005353 1.3e-47 193.7 229 53.7
CDE08G1471 Ceratophyllum demersum HOM05D004490 ORTHO05D005353 1.3e-47 193.7 216 50.9
CAN.G905.35 Capsicum annuum HOM05D004490 ORTHO05D005353 1.7e-47 193.4 221 57.0
Peaxi162Scf00848g00115 Petunia axillaris HOM05D004490 ORTHO05D005353 1.1e-46 190.7 221 54.3
Zm00001eb427930 Zea mays HOM05D004490 ORTHO05D005353 2.7e-45 186.0 219 53.9
HPP92_020159 Vanilla planifolia HOM05D004490 ORTHO05D005353 4.3e-43 178.7 219 48.9
unitig_699.g19825 Utricularia gibba HOM05D004490 ORTHO05D005353 1.2e-42 177.2 220 51.4
RcHm_v2.0_Chr5g0082701 Rosa chinensis HOM05D004490 ORTHO05D005353 2.8e-42 176.0 221 50.2
SEGI_05919 Sequoiadendron giganteum HOM05D004490 ORTHO05D005353 1.1e-41 174.1 172 58.7
CDE02G3308 Ceratophyllum demersum HOM05D004490 ORTHO05D005353 1.4e-41 173.7 162 60.5
RcHm_v2.0_Chr5g0081671 Rosa chinensis HOM05D004490 ORTHO05D005353 1.4e-41 173.7 221 49.8
ATR1098G081 Amborella trichopoda HOM05D004490 ORTHO05D008312 1.8e-41 173.3 210 49.5
FAN21G1156 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.5e-40 170.2 216 49.1
FAN11G3016 Fragaria x ananassa HOM05D004490 ORTHO05D005353 4.6e-37 158.7 219 46.6
Mapoly0003s0077 Marchantia polymorpha HOM05D004490 ORTHO05D005353 8.6e-36 154.5 187 50.8
SHI09004 Sapria himalayana HOM05D004490 ORTHO05D005353 1.4e-33 147.1 169 54.4
FAN25G2105 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.5e-32 143.7 158 54.4
TAR622G0885 Trochodendron aralioides HOM05D004490 ORTHO05D005353 3.2e-30 136.0 103 71.8
Pp3c14_7350 Physcomitrium patens HOM05D004490 ORTHO05D005353 3.5e-29 132.5 201 43.8
CBR_g58400 Chara braunii HOM05D004490 ORTHO05D005353 6.0e-29 131.7 202 43.1
TAR630G0004 Trochodendron aralioides HOM05D004490 ORTHO05D005353 6.0e-29 131.7 103 70.9
Prupe.3G081100 Prunus persica HOM05D004490 ORTHO05D005353 8.7e-28 127.9 221 40.7
FvH4_3g44966 Fragaria vesca HOM05D004490 ORTHO05D005353 2.5e-27 126.3 144 54.9
Gorai.012G182200 Gossypium raimondii HOM05D004490 ORTHO05D005353 5.6e-27 125.2 224 42.4
Hma1.2p1_0363F.1_g136650 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 9.6e-27 124.4 117 63.2
Sopen01g003870 Solanum pennellii HOM05D004490 ORTHO05D005353 1.6e-26 123.6 150 52.0
PGSC0003DMG400016394 Solanum tuberosum HOM05D004490 ORTHO05D002367 1.2e-24 117.5 189 45.5
AagrBONN_evm.TU.Sc2ySwM_228.3521 Anthoceros agrestis HOM05D004490 ORTHO05D005353 3.4e-24 115.9 210 40.0
SHI54375 Sapria himalayana HOM05D004490 ORTHO05D005353 5.4e-22 108.6 156 46.8
SHI41020 Sapria himalayana HOM05D004490 ORTHO05D005353 1.6e-21 107.1 156 46.2
RcHm_v2.0_Chr5g0082081 Rosa chinensis HOM05D004490 ORTHO05D005353 3.5e-21 105.9 151 49.0
FvH4_3g44960 Fragaria vesca HOM05D004490 ORTHO05D005353 1.1e-19 100.9 109 57.8
Gohir.A04G142550 Gossypium hirsutum HOM05D004490 ORTHO05D005353 1.9e-19 100.1 181 39.8
PRCOL_00002362 Prasinoderma coloniale HOM05D004490 ORTHO05D005353 4.3e-19 99.0 182 37.4
Actinidia03513 Actinidia chinensis HOM05D004490 ORTHO05D005353 7.4e-19 98.2 107 58.9
FAN11G0711 Fragaria x ananassa HOM05D004490 ORTHO05D005353 9.6e-19 97.8 116 52.6
Gohir.D04G186001 Gossypium hirsutum HOM05D004490 ORTHO05D005353 6.4e-15 85.1 106 50.0
SEGI_30950 Sequoiadendron giganteum HOM05D023998 ORTHO05D005353 1.0e-12 77.8 60 65.0
MCO12G010 Micromonas commoda HOM05D004490 ORTHO05D005353 1.4e-09 67.4 207 34.3
vmacro00772 Vaccinium macrocarpon HOM05D004490 ORTHO05D005353 2.4e-09 66.6 68 60.3


User provided reference genes

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