Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 9.3e-150 533.5 266 100.0
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 4.0e-76 288.9 265 59.6
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 3.4e-75 285.8 249 63.1
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 9.6e-70 267.7 216 66.7
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 9.3e-65 251.1 271 52.8
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 1.1e-60 237.7 248 55.2
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 1.5e-59 233.8 259 54.4
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 2.6e-59 233.0 248 53.2
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 8.4e-58 228.0 248 53.2
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 5.1e-55 218.8 250 54.0
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 1.9e-54 216.9 257 49.4
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 7.4e-54 214.9 248 54.4
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 2.1e-53 213.4 268 50.0
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 1.8e-52 210.3 249 51.0
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 4.0e-52 209.1 294 46.6
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 9.0e-52 208.0 245 53.9
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 1.2e-51 207.6 258 50.8
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 4.5e-51 205.7 273 48.7
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 4.5e-51 205.7 258 50.8
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 2.2e-50 203.4 266 48.5
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 2.2e-50 203.4 247 49.0
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 2.4e-49 199.9 254 50.4
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 9.3e-49 198.0 249 51.4
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 2.7e-48 196.4 251 47.4
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 1.8e-47 193.7 247 51.4
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 2.3e-47 193.4 237 51.9
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 1.5e-46 190.7 249 46.6
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 2.1e-45 186.8 226 54.0
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 2.4e-44 183.3 277 41.5
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 9.0e-44 181.4 333 38.7
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 2.6e-43 179.9 250 43.2
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 2.6e-43 179.9 247 45.7
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 2.9e-42 176.4 251 43.4
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 3.8e-42 176.0 226 47.8
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 2.5e-41 173.3 254 47.2
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 3.2e-41 172.9 242 43.4
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 7.9e-40 168.3 242 42.6
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 7.9e-40 168.3 277 40.4
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 5.1e-39 165.6 255 47.1
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 5.1e-39 165.6 255 46.7
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 6.7e-39 165.2 250 42.8
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 1.1e-38 164.5 252 46.8
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 1.5e-38 164.1 268 39.6
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 3.3e-38 162.9 261 41.0
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 1.6e-37 160.6 275 38.9
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 1.8e-36 157.1 231 43.7
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 2.4e-36 156.8 243 46.1
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 2.4e-36 156.8 268 38.4
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 3.1e-36 156.4 308 40.3
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 3.1e-36 156.4 266 42.5
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 6.9e-36 155.2 297 35.4
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 2.6e-35 153.3 251 42.2
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 7.6e-35 151.8 251 43.0
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 8.5e-34 148.3 243 41.6
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 8.5e-34 148.3 243 41.6
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 4.2e-33 146.0 231 42.9
Atru.chr5.2357 Acer truncatum HOM05D006273 ORTHO05D007607 5.5e-33 145.6 256 40.2
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 6.1e-32 142.1 243 40.7
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 1.0e-31 141.4 251 37.8
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.4e-31 141.0 242 40.9
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 3.9e-31 139.4 199 44.2
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 1.1e-30 137.9 247 36.4
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 2.2e-29 133.7 243 37.9
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 1.1e-28 131.3 249 38.2
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 2.5e-25 120.2 238 37.0
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 7.2e-25 118.6 253 34.0
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 7.9e-24 115.2 236 39.0
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 8.8e-23 111.7 188 40.4
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 6.3e-21 105.5 244 34.8
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 1.1e-20 104.8 237 37.1
Oeu037282.1 Olea europaea HOM05D006273 ORTHO05D007607 4.1e-20 102.8 240 35.8
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 4.2e-17 92.8 258 34.9
Actinidia00372 Actinidia chinensis HOM05D006273 ORTHO05D007607 1.2e-16 91.3 105 53.3
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 2.1e-16 90.5 245 34.3
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 3.6e-16 89.7 242 33.9
Dinv15806 Davidia involucrata HOM05D006273 ORTHO05D007607 3.0e-15 86.7 71 64.8
FvH4_2g03741 Fragaria vesca HOM05D006273 ORTHO05D007607 5.2e-15 85.9 119 49.6
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 6.7e-15 85.5 214 32.2
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 3.3e-14 83.2 266 32.7
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 4.4e-14 82.8 249 32.1
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 7.4e-14 82.0 273 31.9
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 7.4e-14 82.0 248 34.3
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 9.7e-14 81.6 232 32.8
TPR.G8308 Trifolium pratense HOM05D006273 ORTHO05D007607 1.3e-13 81.3 202 37.1
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 1.7e-13 80.9 252 31.3
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 1.7e-13 80.9 288 33.0
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 2.2e-13 80.5 246 32.1
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 2.2e-13 80.5 252 33.7
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 1.1e-12 78.2 244 33.6
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 2.4e-12 77.0 248 32.7
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 4.1e-12 76.3 104 41.3
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 5.3e-12 75.9 83 43.4
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 1.2e-11 74.7 268 30.2
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 2.0e-11 73.9 266 30.8
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 3.5e-11 73.2 245 29.0
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 2.2e-10 70.5 245 31.4
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 2.2e-10 70.5 145 37.2
Actinidia27988 Actinidia chinensis HOM05D006273 ORTHO05D007607 3.8e-10 69.7 45 80.0
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 3.8e-10 69.7 183 37.2
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 6.5e-10 68.9 246 29.7
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 8.5e-10 68.6 164 36.0
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 1.9e-09 67.4 157 32.5
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 2.5e-09 67.0 248 29.4
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 5.5e-09 65.9 252 31.0
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 2.1e-08 63.9 251 29.9
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 2.1e-08 63.9 100 34.0
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 1.0e-07 61.6 242 28.9
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 2.3e-07 60.5 167 30.5
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 4.0e-07 59.7 168 36.3
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 8.8e-07 58.5 247 27.5
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 4.4e-06 56.2 246 28.0
Psat4g227520 Pisum sativum HOM05D006273 ORTHO05D007607 7.5e-06 55.5 169 34.3
SHI05153 Sapria himalayana HOM05D006273 ORTHO05D007607 7.5e-06 55.5 205 27.8


User provided reference genes

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