Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045591 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.9e-52 208.8 94 100.0
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 1.5e-22 109.4 53 86.8
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 5.8e-22 107.5 75 68.0
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 5.8e-22 107.5 75 68.0
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 6.5e-21 104.0 75 65.3
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 8.4e-21 103.6 75 65.3
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 8.4e-21 103.6 75 65.3
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 8.4e-21 103.6 75 66.7
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 8.4e-21 103.6 75 65.3
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 8.4e-21 103.6 75 65.3
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.1e-20 103.2 52 82.7
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 1.4e-20 102.8 75 66.7
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 1.4e-20 102.8 52 82.7
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.9e-20 102.4 75 65.3
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.9e-20 102.4 75 65.3
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.9e-20 102.4 75 65.3
Haze_21119 Corylus avellana HOM05D002560 ORTHO05D003782 2.5e-20 102.1 75 65.3
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 2.5e-20 102.1 52 82.7
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 2.5e-20 102.1 52 82.7
SEGI_27011 Sequoiadendron giganteum HOM05D002560 ORTHO05D003782 3.2e-20 101.7 51 84.3
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 4.2e-20 101.3 75 64.0
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 4.2e-20 101.3 53 79.2
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 5.5e-20 100.9 52 80.8
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 5.5e-20 100.9 75 64.0
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 5.5e-20 100.9 75 64.0
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 7.1e-20 100.5 75 64.0
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 7.1e-20 100.5 75 64.0
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 7.1e-20 100.5 75 64.0
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 7.1e-20 100.5 75 62.7
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 7.1e-20 100.5 75 64.0
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 7.1e-20 100.5 75 62.7
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 7.1e-20 100.5 75 64.0
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 9.3e-20 100.1 75 65.3
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 9.3e-20 100.1 75 65.3
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 1.2e-19 99.8 75 62.7
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.6e-19 99.4 75 62.7
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.6e-19 99.4 75 62.7
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.6e-19 99.4 75 62.7
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 1.6e-19 99.4 75 61.3
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 1.6e-19 99.4 75 62.7
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 2.1e-19 99.0 75 62.7
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 2.1e-19 99.0 75 62.7
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 2.1e-19 99.0 75 62.7
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 2.1e-19 99.0 52 80.8
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 2.1e-19 99.0 75 62.7
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 2.7e-19 98.6 75 62.7
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.7e-19 98.6 75 62.7
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.7e-19 98.6 75 62.7
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.7e-19 98.6 75 62.7
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.7e-19 98.6 75 62.7
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 2.7e-19 98.6 52 78.8
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 2.7e-19 98.6 52 78.8
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 2.7e-19 98.6 75 62.7
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 2.7e-19 98.6 75 62.7
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 2.7e-19 98.6 75 62.7
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 2.7e-19 98.6 75 61.3
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 2.7e-19 98.6 75 62.7
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 3.5e-19 98.2 75 62.7
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 3.5e-19 98.2 75 62.7
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 3.5e-19 98.2 52 78.8
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 3.5e-19 98.2 75 62.7
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 3.5e-19 98.2 75 62.7
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 3.5e-19 98.2 75 61.3
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 3.5e-19 98.2 75 61.3
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 3.5e-19 98.2 75 61.3
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 4.6e-19 97.8 52 78.8
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 4.6e-19 97.8 52 78.8
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 4.6e-19 97.8 52 78.8
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 4.6e-19 97.8 52 78.8
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 4.6e-19 97.8 75 62.7
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 6.0e-19 97.4 75 61.3
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 6.0e-19 97.4 75 61.3
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 6.0e-19 97.4 75 61.3
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 6.0e-19 97.4 75 61.3
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 6.0e-19 97.4 74 63.5
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 6.0e-19 97.4 52 78.8
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 6.0e-19 97.4 75 61.3
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 7.9e-19 97.1 52 76.9
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 7.9e-19 97.1 52 76.9
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 7.9e-19 97.1 52 76.9
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 7.9e-19 97.1 52 76.9
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 7.9e-19 97.1 52 76.9
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 7.9e-19 97.1 52 76.9
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 7.9e-19 97.1 52 76.9
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 7.9e-19 97.1 52 76.9
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 7.9e-19 97.1 52 76.9
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 7.9e-19 97.1 52 76.9
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 7.9e-19 97.1 75 61.3
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 7.9e-19 97.1 52 78.8
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 7.9e-19 97.1 52 76.9
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 7.9e-19 97.1 75 64.0
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 7.9e-19 97.1 52 76.9
Cpa.g.sc86.8 Carica papaya HOM05D002560 ORTHO05D003782 1.0e-18 96.7 74 64.9
Atru.chr8.2364 Acer truncatum HOM05D002560 ORTHO05D003782 1.3e-18 96.3 75 61.3
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 1.3e-18 96.3 75 61.3
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 1.3e-18 96.3 75 62.7
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.3e-18 96.3 52 76.9
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 1.3e-18 96.3 52 76.9
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 1.3e-18 96.3 75 61.3
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.3e-18 96.3 75 61.3
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.3e-18 96.3 52 76.9
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.3e-18 96.3 52 76.9
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 1.3e-18 96.3 75 62.7
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 1.3e-18 96.3 75 61.3
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 1.8e-18 95.9 52 76.9
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 1.8e-18 95.9 52 76.9
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 1.8e-18 95.9 52 76.9
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 1.8e-18 95.9 52 76.9
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 1.8e-18 95.9 75 62.7
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 2.3e-18 95.5 52 78.8
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 2.3e-18 95.5 52 75.0
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 3.0e-18 95.1 75 60.0
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 3.0e-18 95.1 75 60.0
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 3.0e-18 95.1 52 75.0
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 3.0e-18 95.1 75 60.0
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 3.0e-18 95.1 75 60.0
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 3.0e-18 95.1 75 60.0
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 3.0e-18 95.1 75 60.0
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 3.0e-18 95.1 75 60.0
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 3.0e-18 95.1 75 60.0
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 3.0e-18 95.1 75 60.0
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 3.9e-18 94.7 75 62.7
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 3.9e-18 94.7 52 75.0
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 3.9e-18 94.7 75 62.7
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 3.9e-18 94.7 75 61.3
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 5.1e-18 94.4 51 80.4
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 5.1e-18 94.4 51 80.4
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 5.1e-18 94.4 75 58.7
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 5.1e-18 94.4 75 61.3
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 6.7e-18 94.0 75 60.0
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 8.7e-18 93.6 51 76.5
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 8.7e-18 93.6 51 76.5
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 8.7e-18 93.6 75 58.7
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 8.7e-18 93.6 75 60.0
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 1.1e-17 93.2 51 76.5
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.1e-17 93.2 74 60.8
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 1.1e-17 93.2 51 80.4
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.5e-17 92.8 75 61.3
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 1.9e-17 92.4 75 58.7
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 1.9e-17 92.4 82 57.3
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 2.5e-17 92.0 75 58.7
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 2.5e-17 92.0 75 58.7
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 2.5e-17 92.0 75 60.0
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.5e-17 92.0 51 78.4
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.5e-17 92.0 51 78.4
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.5e-17 92.0 51 78.4
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 4.3e-17 91.3 75 61.3
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 4.3e-17 91.3 75 61.3
Lj2C63G9 Lonicera japonica HOM05D002560 ORTHO05D003782 7.4e-17 90.5 75 60.0
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 1.6e-16 89.4 51 72.5
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 2.2e-16 89.0 51 76.5
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 2.2e-16 89.0 74 60.8
CAN.G84.41 Capsicum annuum HOM05D002560 ORTHO05D000293 3.7e-16 88.2 51 72.5
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 4.8e-16 87.8 75 57.3
MD12G1183900 Malus domestica HOM05D002560 ORTHO05D003782 4.8e-16 87.8 51 72.5
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 4.8e-16 87.8 51 74.5
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 4.8e-16 87.8 51 74.5
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 4.8e-16 87.8 51 70.6
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 8.2e-16 87.0 75 56.0
Eucgr.K01257 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.4e-15 86.3 75 57.3
Ah.15g090290 Amaranthus hybridus HOM05D002560 ORTHO05D003782 4.1e-15 84.7 50 70.0
Cre08.g371957 Chlamydomonas reinhardtii HOM05D002560 ORTHO05D003782 4.1e-15 84.7 76 55.3
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 4.1e-15 84.7 52 71.2
Solyc10g076260.2 Solanum lycopersicum HOM05D002560 ORTHO05D003782 4.1e-15 84.7 75 54.7
PRCOL_00002325 Prasinoderma coloniale HOM05D002560 ORTHO05D003782 4.5e-14 81.3 51 66.7
Nitab4.5_0000355g0160 Nicotiana tabacum HOM05D002560 ORTHO05D003782 7.7e-14 80.5 48 68.8
CBR_g54867 Chara braunii HOM05D002560 ORTHO05D003782 1.7e-13 79.3 75 49.3
Haze_26280 Corylus avellana HOM05D002560 ORTHO05D003782 3.9e-10 68.2 77 45.5
Cfa024140 Carpinus fangiana HOM05D002560 ORTHO05D003782 5.7e-09 64.3 51 52.9
Lsat_1_v5_gn_7_54181 Lactuca sativa HOM05D002560 ORTHO05D003085 5.3e-07 57.8 43 55.8


User provided reference genes

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