Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 8.8e-87 323.6 160 100.0
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 4.0e-47 191.8 155 64.5
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 2.5e-41 172.6 125 72.8
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 5.6e-41 171.4 156 59.0
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 5.6e-41 171.4 153 59.5
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 9.6e-41 170.6 150 57.3
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 4.0e-39 165.2 152 56.6
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 9.0e-39 164.1 150 53.3
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 1.5e-38 163.3 153 54.2
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 4.4e-38 161.8 122 65.6
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 7.6e-38 161.0 150 55.3
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 7.6e-38 161.0 122 62.3
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 9.9e-38 160.6 154 51.3
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 1.3e-37 160.2 153 55.6
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 2.2e-37 159.5 153 52.9
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 2.9e-37 159.1 120 60.8
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 4.9e-37 158.3 147 52.4
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 6.4e-37 157.9 157 54.8
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 8.4e-37 157.5 156 51.3
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 1.4e-36 156.8 150 52.0
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 5.4e-36 154.8 119 62.2
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 5.4e-36 154.8 155 54.2
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 7.1e-36 154.5 119 62.2
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 9.3e-36 154.1 115 64.3
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 9.3e-36 154.1 119 61.3
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 1.6e-35 153.3 143 53.8
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.6e-35 153.3 121 63.6
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 2.7e-35 152.5 154 52.6
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 4.6e-35 151.8 119 65.5
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 4.6e-35 151.8 120 60.8
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 6.0e-35 151.4 110 68.2
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 7.8e-35 151.0 115 65.2
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 1.0e-34 150.6 114 64.0
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.7e-34 149.8 156 50.0
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 2.3e-34 149.4 119 59.7
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 3.0e-34 149.1 152 51.3
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 5.1e-34 148.3 153 51.6
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 5.1e-34 148.3 153 51.6
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 6.6e-34 147.9 114 62.3
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 6.6e-34 147.9 153 50.3
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 6.6e-34 147.9 153 49.0
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 1.1e-33 147.1 119 60.5
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 1.1e-33 147.1 119 60.5
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 1.5e-33 146.7 152 50.7
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 1.5e-33 146.7 114 61.4
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 1.5e-33 146.7 116 61.2
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 2.5e-33 146.0 121 59.5
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 3.3e-33 145.6 119 58.8
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 7.3e-33 144.4 150 49.3
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 9.6e-33 144.1 151 51.0
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 1.3e-32 143.7 152 49.3
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.6e-32 143.3 119 58.0
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 1.6e-32 143.3 114 59.6
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.6e-32 143.3 114 59.6
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 3.6e-32 142.1 154 50.0
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.6e-32 142.1 154 50.0
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 3.6e-32 142.1 110 61.8
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 4.8e-32 141.7 152 49.3
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 4.8e-32 141.7 112 61.6
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 4.8e-32 141.7 112 61.6
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 6.2e-32 141.4 121 57.9
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 1.1e-31 140.6 157 50.3
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 1.1e-31 140.6 151 49.0
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.4e-31 140.2 112 58.9
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 4.0e-31 138.7 157 49.7
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 6.9e-31 137.9 121 53.7
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 9.0e-31 137.5 137 52.6
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 1.2e-30 137.1 113 56.6
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 1.2e-30 137.1 126 56.3
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.5e-30 136.7 113 57.5
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.5e-30 136.7 154 48.1
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 2.0e-30 136.3 154 47.4
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 2.6e-30 136.0 156 46.2
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 3.4e-30 135.6 154 48.7
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.4e-30 135.6 154 48.7
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 9.9e-30 134.0 126 55.6
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 9.9e-30 134.0 115 55.7
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 9.9e-30 134.0 110 59.1
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 1.3e-29 133.7 110 59.1
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.7e-29 133.3 153 48.4
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 1.7e-29 133.3 150 48.0
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 1.7e-29 133.3 106 60.4
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 2.9e-29 132.5 161 45.3
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 8.4e-29 131.0 149 47.7
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 1.4e-28 130.2 114 55.3
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 1.4e-28 130.2 123 53.7
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 1.4e-28 130.2 106 58.5
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.2e-28 129.0 154 46.8
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 4.2e-28 128.6 117 53.0
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 4.2e-28 128.6 119 53.8
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 5.4e-28 128.3 117 52.1
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 5.4e-28 128.3 110 58.2
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 7.1e-28 127.9 96 64.6
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 9.3e-28 127.5 152 46.7
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 1.2e-27 127.1 147 44.9
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 1.2e-27 127.1 92 66.3
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 1.6e-27 126.7 152 46.7
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 6.0e-27 124.8 152 45.4
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 1.3e-26 123.6 149 43.6
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 1.8e-26 123.2 121 52.1
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 5.1e-26 121.7 113 54.9
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 6.7e-26 121.3 124 53.2
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 8.7e-26 120.9 156 44.2
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 1.5e-25 120.2 144 46.5
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 7.4e-25 117.9 150 44.0
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 9.6e-25 117.5 151 45.0
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 1.6e-24 116.7 156 43.6
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 2.1e-24 116.3 89 60.7
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 2.1e-24 116.3 154 43.5
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 6.2e-24 114.8 154 42.2
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 1.1e-23 114.0 160 44.4
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 2.4e-23 112.8 119 50.4
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 9.0e-23 110.9 154 42.9
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 1.2e-22 110.5 154 40.9
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 1.2e-22 110.5 151 42.4
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 1.5e-22 110.2 154 39.6
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 2.6e-22 109.4 154 39.6
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 2.6e-22 109.4 154 39.6
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 2.6e-22 109.4 108 50.9
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 4.5e-22 108.6 151 41.7
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 4.9e-21 105.1 151 40.4
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 4.2e-20 102.1 154 40.3
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 1.6e-19 100.1 123 45.5
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 1.6e-19 100.1 123 45.5
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 2.7e-19 99.4 155 38.1
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 2.7e-19 99.4 155 38.1
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 7.9e-19 97.8 152 38.2
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 3.3e-17 92.4 90 48.9
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 3.4e-14 82.4 98 52.0
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 1.0e-13 80.9 115 39.1
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 3.8e-13 79.0 90 42.2
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 7.9e-11 71.2 89 37.1
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 5.1e-10 68.6 114 36.0


User provided reference genes

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