Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 8.5e-120 433.7 224 100.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 6.0e-65 251.5 203 62.6
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.0e-64 250.8 227 60.8
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 1.9e-58 229.9 197 62.4
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 3.5e-57 225.7 231 56.7
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 5.4e-50 201.8 247 46.6
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 1.5e-47 193.7 203 55.2
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 7.3e-47 191.4 239 47.7
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 6.2e-46 188.3 227 45.8
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.4e-45 187.2 185 53.0
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 3.1e-45 186.0 161 62.7
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 9.0e-45 184.5 165 53.9
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.5e-44 183.7 226 46.0
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 4.4e-44 182.2 233 50.6
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 5.8e-44 181.8 176 51.7
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 9.9e-44 181.0 153 59.5
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.4e-42 177.2 234 44.0
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.9e-42 176.8 182 50.5
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.9e-42 176.8 181 52.5
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 4.2e-42 175.6 197 47.7
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 5.4e-42 175.3 249 43.8
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 7.1e-42 174.9 217 45.6
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 7.1e-42 174.9 161 54.0
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.2e-41 174.1 191 51.3
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 2.1e-41 173.3 223 45.3
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.5e-41 172.6 201 47.8
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 4.6e-41 172.2 195 47.2
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.0e-40 171.0 144 62.5
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 1.3e-40 170.6 231 42.4
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 1.3e-40 170.6 224 44.2
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.3e-40 169.9 233 42.9
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 2.3e-40 169.9 197 47.2
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 3.0e-40 169.5 221 43.0
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 3.9e-40 169.1 206 44.2
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 5.1e-40 168.7 238 44.5
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 5.1e-40 168.7 238 44.5
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 8.7e-40 167.9 193 47.7
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.1e-39 167.5 176 50.0
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.9e-39 166.8 171 50.3
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 3.3e-39 166.0 235 43.4
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.3e-39 165.6 198 47.0
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 7.4e-39 164.9 226 46.9
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.3e-38 164.1 164 51.2
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.6e-38 163.7 164 50.6
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.6e-38 163.7 216 44.9
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.6e-38 163.7 216 44.9
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.6e-38 163.7 203 45.3
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.1e-38 163.3 239 43.1
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 2.1e-38 163.3 158 54.4
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 3.6e-38 162.5 235 43.8
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 3.6e-38 162.5 205 48.3
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 4.8e-38 162.2 147 53.7
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 6.2e-38 161.8 150 58.0
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 6.2e-38 161.8 216 44.0
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 6.2e-38 161.8 216 44.0
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 6.2e-38 161.8 166 49.4
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 6.2e-38 161.8 169 52.1
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 1.1e-37 161.0 233 45.1
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.1e-37 161.0 165 47.9
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.4e-37 160.6 186 47.3
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 1.4e-37 160.6 181 45.9
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.8e-37 160.2 206 44.7
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.8e-37 160.2 167 49.1
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.8e-37 160.2 166 49.4
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 1.8e-37 160.2 202 46.5
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 2.4e-37 159.8 182 50.0
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 3.1e-37 159.5 162 49.4
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 5.3e-37 158.7 156 50.6
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 5.3e-37 158.7 157 53.5
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 5.3e-37 158.7 175 46.9
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 9.0e-37 157.9 163 47.9
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 9.0e-37 157.9 163 47.9
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.2e-36 157.5 161 49.1
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.2e-36 157.5 161 49.1
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.2e-36 157.5 179 44.7
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.2e-36 157.5 155 54.2
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.5e-36 157.1 230 40.0
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 1.5e-36 157.1 236 42.8
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.0e-36 156.8 232 41.8
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 5.8e-36 155.2 150 52.7
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 5.8e-36 155.2 234 43.2
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.8e-36 155.2 166 48.2
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 7.6e-36 154.8 176 46.0
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 7.6e-36 154.8 243 41.6
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 7.6e-36 154.8 243 41.6
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 9.9e-36 154.5 151 51.0
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 9.9e-36 154.5 151 51.0
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.7e-35 153.7 175 46.3
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.7e-35 153.7 170 46.5
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 2.2e-35 153.3 151 50.3
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.9e-35 152.9 152 50.0
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.9e-35 152.9 152 50.0
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 6.4e-35 151.8 182 44.5
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 6.4e-35 151.8 233 40.8
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 8.4e-35 151.4 167 46.7
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 3.2e-34 149.4 154 49.4
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 7.1e-34 148.3 202 41.6
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.6e-33 147.1 152 49.3
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 2.1e-33 146.7 189 40.7
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 4.6e-33 145.6 144 52.8
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.0e-32 144.4 152 48.0
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.3e-32 144.1 151 47.7
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.8e-32 143.7 194 44.3
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 2.3e-32 143.3 189 42.9
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.3e-32 143.3 223 41.7
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 8.7e-32 141.4 158 48.1
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.5e-31 140.6 208 40.9
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.5e-31 140.6 152 44.1
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 3.3e-31 139.4 166 45.2
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.6e-31 138.7 235 37.9
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 5.6e-31 138.7 180 41.7
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-30 137.5 201 41.8
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.6e-30 137.1 150 48.0
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 4.8e-30 135.6 214 38.8
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 6.2e-30 135.2 235 37.0
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 8.1e-30 134.8 214 40.7
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 8.1e-30 134.8 170 42.4
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 2.0e-28 130.2 158 51.9
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 5.8e-28 128.6 155 48.4
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.2e-27 126.7 169 43.2
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.2e-27 126.7 169 43.2
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 1.4e-26 124.0 175 41.7
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 2.5e-26 123.2 166 42.8
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 3.2e-26 122.9 200 46.5
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 9.3e-26 121.3 232 38.8
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 2.1e-25 120.2 176 42.6
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.7e-25 119.8 224 38.4
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 3.5e-25 119.4 172 40.7
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 6.0e-25 118.6 257 32.7
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 6.0e-25 118.6 179 41.9
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.0e-24 117.9 155 45.2
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.8e-24 117.1 114 49.1
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.3e-24 116.7 114 48.2
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 2.3e-24 116.7 257 38.1
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 2.3e-24 116.7 209 38.8
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.9e-24 115.9 114 48.2
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 8.7e-24 114.8 171 40.9
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.5e-23 114.0 177 38.4
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.5e-23 114.0 177 38.4
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.5e-23 114.0 144 41.7
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 2.5e-23 113.2 220 39.5
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 4.3e-23 112.5 153 41.8
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 5.7e-23 112.1 150 40.0
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 2.8e-22 109.8 182 39.6
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.1e-21 107.8 181 37.6
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 9.0e-21 104.8 178 36.5
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 2.0e-20 103.6 150 40.7
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 5.9e-20 102.1 147 38.8
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.3e-19 100.9 148 41.9
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 5.5e-18 95.5 178 33.1
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 6.1e-17 92.0 149 34.2
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 6.7e-16 88.6 216 31.9
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.5e-15 87.4 63 65.1
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 9.7e-15 84.7 191 31.4
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.1e-13 81.3 79 51.9
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 4.1e-13 79.3 117 37.6
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 6.9e-13 78.6 88 42.0
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.2e-12 77.8 171 32.2
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 2.0e-12 77.0 79 49.4
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.0e-11 74.7 188 31.4
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.9e-11 73.2 208 30.3
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 2.9e-11 73.2 72 51.4
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.4e-10 70.9 237 26.6
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.0e-08 64.7 138 35.5


User provided reference genes

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