Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 2.2e-97 359.0 189 100.0
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 3.6e-95 351.7 189 98.4
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 1.4e-70 270.0 190 76.3
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 2.3e-70 269.2 189 77.2
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 2.0e-69 266.2 187 77.0
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 3.7e-68 261.9 182 76.4
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 5.4e-67 258.1 187 71.7
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 7.0e-67 257.7 194 74.2
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 2.7e-66 255.8 187 72.2
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 7.8e-66 254.2 183 74.3
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 1.3e-65 253.4 184 72.3
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 1.7e-65 253.1 188 72.3
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 2.3e-65 252.7 187 71.7
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 3.0e-65 252.3 187 72.7
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 5.0e-65 251.5 185 73.5
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 2.5e-64 249.2 187 71.1
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 3.3e-64 248.8 190 70.0
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 7.3e-64 247.7 187 71.7
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 1.2e-63 246.9 186 71.5
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 2.1e-63 246.1 187 71.1
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 4.7e-63 245.0 186 69.9
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 6.2e-63 244.6 190 74.7
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 1.4e-62 243.4 186 71.0
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 2.3e-62 242.7 190 70.0
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 3.1e-62 242.3 195 68.7
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 4.0e-62 241.9 181 74.6
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 6.8e-62 241.1 186 72.6
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 1.2e-61 240.4 184 71.7
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 1.5e-61 240.0 183 68.9
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 1.7e-60 236.5 185 70.8
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 2.9e-60 235.7 182 72.0
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 3.7e-60 235.3 183 68.9
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 3.7e-60 235.3 183 68.9
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 4.9e-60 235.0 185 70.8
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 6.4e-60 234.6 182 68.7
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 1.1e-59 233.8 185 70.8
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 1.1e-59 233.8 183 70.5
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 3.2e-59 232.3 187 65.2
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 3.2e-59 232.3 162 76.5
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 7.0e-59 231.1 185 69.7
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 7.0e-59 231.1 185 70.3
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 7.0e-59 231.1 180 69.4
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 7.0e-59 231.1 185 70.3
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 9.2e-59 230.7 185 70.3
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 1.6e-58 229.9 182 67.0
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 1.6e-58 229.9 188 67.6
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 1.6e-58 229.9 184 69.6
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 2.1e-58 229.6 190 70.0
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 2.7e-58 229.2 182 68.1
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 2.7e-58 229.2 185 67.0
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 3.5e-58 228.8 183 68.3
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 6.0e-58 228.0 182 66.5
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 6.0e-58 228.0 183 69.9
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 7.8e-58 227.6 184 66.8
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 3.9e-57 225.3 185 67.6
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 5.1e-57 224.9 190 66.3
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 5.1e-57 224.9 188 67.0
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 5.1e-57 224.9 183 66.7
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 6.6e-57 224.6 182 66.5
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 6.6e-57 224.6 184 66.3
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 8.6e-57 224.2 177 67.8
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 4.3e-56 221.9 187 67.4
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 5.6e-56 221.5 199 63.3
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.2e-55 220.3 184 64.1
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 1.2e-55 220.3 179 68.7
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 1.6e-55 219.9 184 65.2
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 1.6e-55 219.9 184 67.9
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 4.7e-55 218.4 187 67.9
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 6.2e-55 218.0 184 63.6
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 2.3e-54 216.1 188 67.0
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 1.2e-53 213.8 189 66.1
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 2.0e-53 213.0 189 64.6
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 4.4e-53 211.8 183 66.1
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.7e-52 209.9 184 63.6
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 2.2e-52 209.5 189 66.7
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 2.9e-52 209.1 187 62.6
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 4.9e-52 208.4 184 63.6
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 4.9e-52 208.4 182 63.7
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 6.4e-52 208.0 180 63.3
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 6.4e-52 208.0 189 61.4
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 6.4e-52 208.0 177 63.8
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 1.1e-51 207.2 230 53.9
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 2.4e-51 206.1 130 80.8
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 3.2e-51 205.7 191 58.1
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 3.2e-51 205.7 194 60.8
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 3.2e-51 205.7 179 67.6
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 5.4e-51 204.9 164 68.3
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 5.4e-51 204.9 210 58.1
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 7.8e-50 201.1 171 68.4
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 5.1e-49 198.4 184 60.9
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 6.6e-49 198.0 113 86.7
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 6.6e-49 198.0 112 87.5
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 1.5e-48 196.8 185 60.5
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 1.9e-48 196.4 113 85.0
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 1.9e-48 196.4 113 84.1
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.9e-48 196.4 169 61.5
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 7.3e-48 194.5 182 59.3
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 1.2e-47 193.7 113 84.1
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 1.2e-47 193.7 182 61.0
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 3.6e-47 192.2 189 61.4
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 4.0e-46 188.7 118 82.2
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 6.8e-46 188.0 140 71.4
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 4.4e-45 185.3 151 70.9
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 4.4e-45 185.3 172 59.9
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 5.8e-45 184.9 163 68.7
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 2.9e-44 182.6 112 79.5
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 2.4e-43 179.5 112 76.8
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.5e-40 170.2 185 55.7
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 5.8e-37 158.3 102 83.3
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 4.2e-35 152.1 92 79.3
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.5e-34 149.1 92 78.3
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 1.0e-33 147.5 182 49.5
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 5.1e-33 145.2 110 63.6
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 6.6e-33 144.8 88 80.7
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 2.5e-32 142.9 92 78.3
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 1.3e-31 140.6 121 66.1
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.5e-29 133.7 90 71.1
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 4.5e-29 132.1 70 88.6
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 1.7e-28 130.2 141 57.4
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 2.2e-28 129.8 133 51.9
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 6.4e-28 128.3 70 85.7
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 1.9e-27 126.7 97 62.9
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 5.4e-27 125.2 101 58.4
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 1.0e-25 120.9 94 61.7
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 5.3e-22 108.6 81 64.2
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 6.4e-20 101.7 109 48.6
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 1.2e-18 97.4 92 55.4
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 3.7e-07 59.3 85 34.1


User provided reference genes

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