Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 0.0e+00 1825.8 991 100.0
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 0.0e+00 1820.8 991 99.8
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 5.3e-307 1057.7 999 64.1
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 4.9e-268 928.3 956 60.4
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 1.6e-258 896.7 996 58.9
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 6.6e-257 891.3 1132 53.9
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.8e-223 779.6 428 94.6
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 4.0e-222 775.8 419 95.9
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 6.4e-220 768.5 1024 51.1
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 9.9e-213 744.6 893 56.0
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 6.9e-206 721.8 1004 49.3
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 2.6e-205 719.9 1006 49.2
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 4.5e-197 692.6 1025 49.0
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 1.7e-188 664.1 1001 46.3
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.9e-187 660.6 1040 46.1
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 1.1e-184 651.4 1005 46.6
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 7.7e-181 638.6 952 47.5
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 8.0e-178 628.6 1006 46.1
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.6e-173 614.4 1040 44.5
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 3.5e-173 613.2 1003 45.5
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 3.8e-172 609.8 1017 45.4
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 8.5e-172 608.6 1004 45.2
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 7.2e-171 605.5 1005 46.3
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 4.0e-169 599.7 1005 45.4
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.1e-166 591.7 995 44.6
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 3.1e-166 590.1 1033 45.4
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 5.3e-166 589.3 946 44.4
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 2.7e-165 587.0 997 43.6
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 1.0e-164 585.1 950 45.7
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 5.0e-164 582.8 893 48.4
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.1e-163 581.6 1010 43.6
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.5e-163 581.3 1010 43.5
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 7.2e-163 578.9 1004 43.3
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.1e-162 577.4 1027 44.7
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 4.7e-162 576.2 1009 43.4
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 8.8e-161 572.0 967 45.1
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 2.0e-160 570.9 1020 40.4
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 1.8e-158 564.3 1012 44.3
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.3e-156 558.1 1094 43.0
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 4.2e-155 553.1 1005 42.8
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.2e-152 545.0 982 43.3
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 1.2e-152 545.0 1028 40.7
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 3.1e-150 537.0 1011 43.5
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 9.2e-150 535.4 1013 40.9
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 2.0e-149 534.3 999 42.5
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 3.8e-148 530.0 1016 41.6
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 1.2e-146 525.0 1003 42.5
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 2.2e-143 514.2 1015 42.0
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 2.2e-143 514.2 1010 42.7
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 3.7e-143 513.5 965 41.7
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 3.7e-143 513.5 820 46.3
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 1.1e-142 511.9 1017 40.8
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 4.1e-142 510.0 1011 41.6
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 1.6e-141 508.1 846 44.4
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 1.6e-141 508.1 1001 42.9
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 6.6e-140 502.7 1019 41.0
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 4.7e-138 496.5 1016 39.9
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 1.2e-136 491.9 1029 39.8
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 7.5e-136 489.2 923 41.5
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 3.7e-135 486.9 1015 41.3
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 1.9e-134 484.6 1013 39.7
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 2.4e-134 484.2 1039 39.8
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 4.1e-134 483.4 1016 40.5
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 3.5e-133 480.3 1011 39.1
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 4.6e-133 479.9 1017 39.1
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.4e-129 468.4 940 40.9
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 3.1e-129 467.2 1029 40.5
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 3.1e-129 467.2 918 41.0
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 3.4e-128 463.8 1031 39.5
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 9.9e-128 462.2 766 44.9
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.3e-127 461.8 1034 40.0
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.1e-126 458.8 989 40.8
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 3.2e-126 457.2 1025 38.2
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 9.2e-126 455.7 938 40.4
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 3.0e-124 450.7 1009 40.0
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 1.5e-123 448.4 919 40.9
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 5.2e-121 439.9 938 39.8
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 4.4e-120 436.8 868 41.1
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 1.1e-118 432.2 1091 39.2
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 6.0e-117 426.4 861 41.8
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 3.9e-116 423.7 917 36.6
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 5.6e-115 419.9 1009 36.9
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 4.7e-114 416.8 1063 37.3
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 6.2e-114 416.4 986 38.0
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.1e-113 415.6 1083 38.0
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 7.6e-112 409.5 1016 37.9
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 1.6e-109 401.7 994 37.3
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 2.7e-109 401.0 1023 37.1
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 3.5e-109 400.6 917 36.0
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 1.1e-107 395.6 1018 36.0
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 6.7e-100 369.8 1018 37.4
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 1.5e-99 368.6 1003 35.3
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 2.5e-99 367.9 996 36.0
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 1.1e-97 362.5 1025 37.2
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 5.8e-96 356.7 1043 34.2
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 1.6e-93 348.6 1027 35.0
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 2.1e-93 348.2 1000 33.5
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 3.5e-93 347.4 935 37.2
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.0e-87 329.3 954 35.8
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 3.8e-87 327.4 948 35.4
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 6.5e-87 326.6 888 34.8
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 4.2e-86 323.9 625 42.7
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 1.2e-85 322.4 834 33.8
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 1.3e-84 318.9 868 36.1
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 3.9e-84 317.4 1006 35.5
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 5.1e-84 317.0 1110 33.4
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 8.7e-84 316.2 950 34.3
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.1e-81 309.3 1010 32.7
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 3.9e-76 290.8 1011 33.7
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 5.3e-73 280.4 1079 31.4
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 3.8e-63 247.7 983 34.6
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 6.7e-60 236.9 983 30.6
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 2.0e-56 225.3 155 76.1
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 1.7e-50 205.7 255 51.8
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 6.5e-47 193.7 158 67.7
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 4.2e-46 191.0 302 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.3e-34 152.9 1097 27.0
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 1.9e-30 139.0 468 34.0
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 4.7e-29 134.4 298 36.9
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 4.0e-28 131.3 97 71.1
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.0e-27 129.0 97 73.2
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 7.0e-25 120.6 183 42.6
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 1.2e-24 119.8 159 45.3
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 2.7e-24 118.6 73 75.3
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 1.9e-22 112.5 234 37.2
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 5.8e-19 100.9 1067 23.1
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 3.2e-17 95.1 143 44.8
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 7.1e-17 94.0 256 32.8
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 2.1e-13 82.4 187 31.6
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 3.1e-12 78.6 60 70.0
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 6.8e-12 77.4 60 68.3
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.6e-08 66.2 816 24.8
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 7.8e-08 63.9 93 51.6


User provided reference genes

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