Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.6e-149 532.7 260 100.0
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 2.9e-119 432.2 257 78.6
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 4.3e-115 418.3 257 75.9
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.4e-110 403.3 297 67.0
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 3.5e-109 398.7 259 69.1
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 3.5e-109 398.7 259 71.0
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.5e-107 393.3 326 63.8
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.9e-107 392.9 259 69.5
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 3.3e-107 392.1 259 70.3
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 4.3e-107 391.7 259 70.3
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 9.6e-107 390.6 257 69.3
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.2e-106 390.2 257 69.3
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 1.4e-105 386.7 262 70.6
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 3.1e-105 385.6 259 69.9
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 5.2e-105 384.8 259 69.5
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.2e-104 383.6 259 68.0
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.5e-104 383.3 259 67.2
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.0e-104 382.9 259 69.1
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 2.6e-104 382.5 259 69.5
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 9.9e-104 380.6 262 65.6
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.3e-103 380.2 258 68.6
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 2.2e-103 379.4 259 68.3
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 8.4e-103 377.5 257 68.5
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 2.4e-102 375.9 261 68.6
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 4.2e-102 375.2 262 69.5
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 9.3e-102 374.0 261 67.0
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 9.3e-102 374.0 258 69.8
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 2.7e-101 372.5 278 66.2
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 1.3e-100 370.2 259 67.6
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.7e-100 369.8 259 69.1
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 5.1e-100 368.2 260 68.5
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 5.1e-100 368.2 259 66.8
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.1e-99 367.1 259 64.9
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.9e-99 366.3 238 70.2
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 3.3e-99 365.5 258 67.1
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 5.6e-99 364.8 259 65.3
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 5.6e-99 364.8 242 69.4
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.3e-99 364.4 262 66.4
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 9.6e-99 364.0 258 64.3
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.6e-98 363.2 259 66.8
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 2.8e-98 362.5 262 67.9
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 3.6e-98 362.1 261 66.3
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.6e-98 362.1 271 64.6
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 4.8e-98 361.7 262 65.6
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.8e-98 361.7 262 65.6
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 4.8e-98 361.7 279 62.4
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 6.2e-98 361.3 259 64.5
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 8.1e-98 360.9 258 64.7
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 1.1e-97 360.5 259 65.3
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.1e-97 360.5 259 65.3
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.4e-97 359.4 259 64.9
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 3.1e-97 359.0 259 65.3
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 6.9e-97 357.8 256 63.7
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.5e-96 356.7 259 64.9
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 2.6e-96 355.9 262 65.3
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.6e-96 354.4 254 66.1
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 1.7e-95 353.2 259 65.3
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.9e-95 352.4 251 66.5
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.9e-95 352.4 291 61.5
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.8e-95 352.1 257 62.6
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 3.8e-95 352.1 258 65.9
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 8.4e-95 350.9 259 64.5
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 1.4e-94 350.1 281 60.9
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 2.4e-94 349.4 221 72.4
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 3.2e-94 349.0 258 64.0
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 5.4e-94 348.2 239 68.6
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.2e-93 347.1 258 64.0
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 6.0e-93 344.7 262 62.6
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 6.0e-93 344.7 263 66.2
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 7.9e-93 344.4 261 63.2
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 1.3e-92 343.6 259 62.5
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 2.3e-92 342.8 258 63.2
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.1e-91 340.5 235 67.2
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 3.3e-91 339.0 258 62.4
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 5.6e-91 338.2 217 70.0
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.4e-91 337.8 209 72.7
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 9.6e-91 337.4 258 60.9
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.3e-90 337.0 207 72.9
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.8e-90 335.9 231 65.4
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.4e-89 333.6 233 69.1
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 5.3e-89 331.6 259 62.5
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 6.9e-89 331.3 260 62.3
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 4.5e-88 328.6 258 57.8
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 7.6e-88 327.8 300 54.7
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.4e-86 322.8 238 63.0
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 3.5e-85 318.9 258 59.3
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 7.9e-85 317.8 274 58.4
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.3e-84 316.2 237 61.6
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 3.0e-84 315.8 200 71.0
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 2.1e-82 309.7 259 57.9
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.4e-81 307.0 235 63.4
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 9.0e-81 304.3 258 57.4
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 1.0e-79 300.8 219 63.0
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.7e-79 300.1 222 65.3
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 2.9e-79 299.3 222 59.5
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 2.5e-78 296.2 183 72.7
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.1e-75 287.3 182 71.4
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.5e-75 286.2 215 63.7
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 1.3e-74 283.9 259 52.5
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 8.2e-74 281.2 304 49.7
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 1.2e-72 277.3 220 59.5
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.6e-72 276.2 196 69.9
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 3.4e-72 275.8 259 53.3
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 3.8e-71 272.3 233 57.5
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 7.2e-70 268.1 185 67.0
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 4.6e-69 265.4 263 54.4
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 6.7e-68 261.5 222 56.8
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.5e-64 248.8 184 64.1
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 1.9e-62 243.4 225 56.0
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.2e-56 224.2 176 62.5
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 5.0e-55 218.8 213 46.0
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.1e-54 217.6 172 64.0
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.1e-54 217.6 194 53.1
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 2.1e-53 213.4 268 42.5
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 1.8e-52 210.3 216 50.5
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.8e-52 210.3 168 57.7
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.8e-52 210.3 149 66.4
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.9e-52 209.1 141 64.5
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.1e-51 207.6 151 64.9
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 3.7e-50 202.6 166 59.6
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 3.1e-49 199.5 207 48.3
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.9e-47 193.0 141 63.1
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 3.8e-47 192.6 185 50.3
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 5.0e-47 192.2 130 68.5
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.2e-46 189.1 225 46.2
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 5.2e-44 182.2 145 58.6
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.0e-43 180.3 86 98.8
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 2.0e-43 180.3 126 65.9
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.3e-42 177.6 86 97.7
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.7e-42 177.2 86 97.7
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.8e-42 175.6 86 95.3
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.3e-39 167.5 199 44.2
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 4.2e-38 162.5 112 63.4
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.4e-36 157.5 154 53.9
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 2.0e-35 153.7 150 54.7
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 5.7e-35 152.1 218 39.0
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.2e-34 150.2 238 37.8
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-30 137.9 156 46.2
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 2.1e-29 133.7 96 63.5
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.4e-28 131.0 368 26.6
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.8e-28 130.6 289 29.1
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 9.8e-27 124.8 76 65.8
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 1.7e-26 124.0 221 31.7
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 7.8e-24 115.2 72 68.1
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.7e-23 114.0 69 72.5
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.9e-23 113.2 67 70.1
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.6e-23 112.1 67 70.1
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.9e-22 110.5 67 68.7
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.2e-21 107.8 74 60.8
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.8e-21 106.7 81 61.7
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 6.8e-20 102.1 63 71.4
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 4.4e-19 99.4 90 55.6
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 2.4e-17 93.6 82 58.5
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 8.6e-15 85.1 59 66.1
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 3.1e-12 76.6 85 49.4
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 9.8e-11 71.6 57 57.9
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.7e-10 70.9 48 60.4
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 6.4e-10 68.9 61 50.8
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 6.4e-10 68.9 48 66.7
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 2.1e-08 63.9 66 51.5
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 1.1e-06 58.2 137 27.7
TAR371G0964 Trochodendron aralioides HOM05D000762 ORTHO05D002234 7.3e-06 55.5 31 80.6


User provided reference genes

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