Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 1.1e-41 172.9 90 100.0
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 3.0e-39 164.9 90 96.7
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 1.9e-17 92.4 70 71.4
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 2.7e-16 88.6 67 74.6
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 3.9e-15 84.7 91 58.2
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 8.7e-15 83.6 87 58.6
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 1.5e-14 82.8 87 57.5
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 5.6e-14 80.9 92 52.2
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 7.3e-14 80.5 70 67.1
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 7.3e-14 80.5 70 67.1
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.6e-13 79.3 89 55.1
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.6e-13 79.3 89 55.1
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.6e-13 79.3 89 55.1
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 3.6e-13 78.2 68 64.7
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 8.1e-13 77.0 91 54.9
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 5.3e-12 74.3 72 59.7
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 2.6e-11 72.0 73 57.5
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 4.4e-11 71.2 73 54.8
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 5.8e-11 70.9 73 54.8
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 1.7e-10 69.3 83 50.6
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 6.4e-10 67.4 74 56.8
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 6.4e-10 67.4 68 57.4
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 1.4e-09 66.2 70 57.1
Hma1.2p1_0031F.1_g018580 Hydrangea macrophylla HOM05D007313 ORTHO05D005299 1.9e-09 65.9 82 52.4
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 1.2e-08 63.2 63 58.7
TPR.G18382 Trifolium pratense HOM05D008500 ORTHO05D005299 1.2e-08 63.2 68 55.9
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 1.6e-08 62.8 72 52.8
Nn4g24351 Nelumbo nucifera HOM05D008500 ORTHO05D005299 1.6e-08 62.8 66 56.1
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 1.6e-08 62.8 69 50.7
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 2.7e-08 62.0 63 57.1
Lsat_1_v5_gn_4_12541 Lactuca sativa HOM05D007313 ORTHO05D005299 2.7e-08 62.0 82 46.3
Sopen04g003130 Solanum pennellii HOM05D007313 ORTHO05D005299 2.7e-08 62.0 84 53.6
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 3.5e-08 61.6 85 47.1
PGSC0003DMG400029516 Solanum tuberosum HOM05D007313 ORTHO05D005299 4.6e-08 61.2 68 61.8
Lsat_1_v5_gn_8_46180 Lactuca sativa HOM05D007313 ORTHO05D005299 6.0e-08 60.8 84 50.0
Solyc04g007990.1 Solanum lycopersicum HOM05D007313 ORTHO05D005299 6.0e-08 60.8 68 60.3
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 1.0e-07 60.1 60 60.0
Glyma.07G104300 Glycine max HOM05D008500 ORTHO05D005299 1.0e-07 60.1 62 59.7
Phvul.002G320600 Phaseolus vulgaris HOM05D007313 ORTHO05D005299 1.7e-07 59.3 73 49.3
MD16G1019400 Malus domestica HOM05D007313 ORTHO05D005299 2.3e-07 58.9 89 49.4
RcHm_v2.0_Chr7g0178031 Rosa chinensis HOM05D008500 ORTHO05D005299 2.3e-07 58.9 78 46.2
ECA233G5799 Erigeron canadensis HOM05D007313 ORTHO05D005299 3.0e-07 58.5 96 42.7
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 3.9e-07 58.2 63 57.1
Nn3g18353 Nelumbo nucifera HOM05D008500 ORTHO05D005299 3.9e-07 58.2 70 50.0
Prupe.1G332700 Prunus persica HOM05D007313 ORTHO05D005299 3.9e-07 58.2 73 54.8
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 5.1e-07 57.8 67 53.7
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 5.1e-07 57.8 59 57.6
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 6.6e-07 57.4 74 50.0
Duzib205G0189 Durio zibethinus HOM05D008500 ORTHO05D005299 6.6e-07 57.4 61 57.4
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 6.6e-07 57.4 59 57.6
Glyma.09G173300 Glycine max HOM05D008500 ORTHO05D005299 6.6e-07 57.4 65 55.4
Psat7g008240 Pisum sativum HOM05D007313 ORTHO05D005299 6.6e-07 57.4 70 50.0
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 8.7e-07 57.0 59 57.6
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 8.7e-07 57.0 59 57.6
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 8.7e-07 57.0 59 57.6
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 8.7e-07 57.0 59 57.6
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 8.7e-07 57.0 59 57.6
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 8.7e-07 57.0 59 57.6
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 8.7e-07 57.0 59 57.6
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 1.1e-06 56.6 59 57.6
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 1.1e-06 56.6 86 50.0
Thecc.03G061000 Theobroma cacao HOM05D008500 ORTHO05D005299 1.1e-06 56.6 69 52.2
MBI19_g22070_MAGBIO Magnolia biondii HOM05D008500 ORTHO05D005299 1.5e-06 56.2 83 48.2
Psat1g030680 Pisum sativum HOM05D008500 ORTHO05D005299 1.5e-06 56.2 65 52.3
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 1.9e-06 55.8 59 57.6
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 1.9e-06 55.8 59 57.6
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 2.5e-06 55.5 59 55.9
ClCG01G006530 Citrullus lanatus HOM05D007313 ORTHO05D005299 2.5e-06 55.5 81 49.4
FvH4_5g17640 Fragaria vesca HOM05D008500 ORTHO05D005299 2.5e-06 55.5 78 44.9
FAN18G0107 Fragaria x ananassa HOM05D008500 ORTHO05D005299 2.5e-06 55.5 73 47.9
VMungo0540G1213 Vigna mungo HOM05D007313 ORTHO05D005299 2.5e-06 55.5 69 50.7
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 3.3e-06 55.1 73 50.7
FAN04G2293 Fragaria x ananassa HOM05D008500 ORTHO05D005299 3.3e-06 55.1 66 50.0
Phvul.004G148400 Phaseolus vulgaris HOM05D008500 ORTHO05D005299 3.3e-06 55.1 65 52.3
Medtr8g105190 Medicago truncatula HOM05D007313 ORTHO05D005299 4.3e-06 54.7 70 48.6
Potri.015G034800 Populus trichocarpa HOM05D008500 ORTHO05D005299 4.3e-06 54.7 79 46.8
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 5.6e-06 54.3 59 55.9
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 5.6e-06 54.3 59 55.9
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 5.6e-06 54.3 59 55.9
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 5.6e-06 54.3 59 55.9
FAN08G2086 Fragaria x ananassa HOM05D008500 ORTHO05D005299 5.6e-06 54.3 66 50.0
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 5.6e-06 54.3 68 51.5
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 5.6e-06 54.3 76 52.6
Cpa.g.sc3.366 Carica papaya HOM05D008500 ORTHO05D005299 7.3e-06 53.9 63 58.7
FAN13G1653 Fragaria x ananassa HOM05D008500 ORTHO05D005299 7.3e-06 53.9 66 50.0
Lj4g0008951 Lotus japonicus HOM05D007313 ORTHO05D005299 7.3e-06 53.9 90 45.6
MELO3C005274.2 Cucumis melo HOM05D007313 ORTHO05D005299 9.6e-06 53.5 65 55.4
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 9.6e-06 53.5 62 56.5


User provided reference genes

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