Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 0.0e+00 1741.5 920 100.0
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1362.1 924 78.9
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1359.7 922 79.3
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1335.9 931 78.0
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 0.0e+00 1300.8 920 75.4
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 0.0e+00 1287.7 926 75.7
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 0.0e+00 1204.5 882 73.1
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 0.0e+00 1186.0 931 68.7
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 0.0e+00 1176.8 925 69.0
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 0.0e+00 1162.9 964 66.5
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 0.0e+00 1159.4 929 69.0
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 0.0e+00 1154.4 858 71.2
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 0.0e+00 1154.0 911 68.1
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 0.0e+00 1154.0 919 68.1
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 0.0e+00 1143.6 925 67.7
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1143.6 928 67.1
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 0.0e+00 1143.6 927 67.7
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 0.0e+00 1138.6 927 67.1
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 0.0e+00 1134.8 887 68.9
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 0.0e+00 1134.0 927 66.6
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 0.0e+00 1127.9 887 68.2
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 0.0e+00 1116.3 929 66.8
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 0.0e+00 1106.7 917 66.8
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 0.0e+00 1105.9 914 66.2
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 0.0e+00 1104.4 879 68.3
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 0.0e+00 1100.5 887 67.9
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1098.2 928 64.9
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1097.8 916 64.5
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 0.0e+00 1097.8 927 64.7
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1095.1 916 64.6
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 0.0e+00 1095.1 915 64.5
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1094.3 917 64.4
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1093.6 924 65.3
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 0.0e+00 1093.6 926 63.7
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 0.0e+00 1089.7 919 64.3
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 0.0e+00 1087.8 930 65.3
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 0.0e+00 1084.7 932 65.3
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 0.0e+00 1079.3 916 64.3
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 0.0e+00 1077.0 880 65.3
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 1.1e-309 1066.6 914 64.6
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 1.5e-308 1062.8 888 64.3
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 2.6e-308 1062.0 926 63.7
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 3.4e-308 1061.6 928 63.7
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 5.8e-308 1060.8 925 61.9
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 7.6e-308 1060.4 915 63.1
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 3.2e-306 1055.0 920 63.7
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 1.3e-304 1049.7 912 64.3
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 1.8e-304 1049.3 920 63.3
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 2.3e-304 1048.9 900 64.6
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 6.2e-302 1040.8 917 63.0
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 4.0e-301 1038.1 909 62.0
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 6.4e-299 1030.8 864 64.2
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.2e-297 1026.5 919 61.7
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 2.7e-297 1025.4 863 64.2
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.9e-296 1021.5 930 60.3
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 3.9e-296 1021.5 864 63.0
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 8.7e-296 1020.4 928 61.3
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 4.3e-295 1018.1 864 63.7
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 4.8e-294 1014.6 864 63.8
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 4.0e-293 1011.5 877 62.5
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 7.6e-292 1007.3 897 61.2
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 7.6e-292 1007.3 911 61.7
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 8.4e-291 1003.8 834 65.3
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 7.9e-289 997.3 864 63.0
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 8.2e-286 987.3 992 57.0
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 1.5e-284 983.0 918 58.4
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 5.9e-284 981.1 918 59.2
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 2.9e-283 978.8 934 58.6
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 2.5e-282 975.7 933 58.6
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 2.5e-282 975.7 893 60.7
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 2.3e-280 969.1 933 59.1
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 4.3e-279 964.9 889 59.5
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 1.1e-277 960.3 889 59.2
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 9.1e-277 957.2 890 58.8
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 1.2e-276 956.8 889 58.9
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 2.0e-276 956.1 892 58.4
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 3.4e-276 955.3 889 58.9
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 3.4e-276 955.3 889 58.9
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 1.4e-274 949.9 919 56.8
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 5.5e-274 948.0 795 65.0
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 2.7e-273 945.7 890 58.0
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 9.7e-271 937.2 660 75.3
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 1.4e-269 933.3 890 59.1
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 4.1e-269 931.8 793 63.2
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 6.5e-267 924.5 770 64.5
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.6e-265 919.8 928 55.6
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 4.7e-265 918.3 889 57.1
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.4e-264 916.8 753 66.1
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 2.3e-264 916.0 751 64.8
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 8.0e-257 891.0 921 55.3
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.2e-255 887.1 924 53.6
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 1.8e-253 879.8 860 58.1
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.2e-251 872.8 866 56.1
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 5.0e-227 792.0 804 55.0
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 1.9e-213 746.9 569 69.9
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 6.0e-204 715.3 666 59.3
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 1.6e-193 680.6 661 56.1
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 4.5e-191 672.5 551 63.7
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 7.6e-183 645.2 884 43.7
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.8e-179 634.0 714 53.5
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 5.1e-179 632.5 877 43.3
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 7.4e-178 628.6 903 40.6
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.3e-177 627.9 896 41.4
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 3.5e-172 609.8 804 49.4
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 4.5e-167 592.8 477 67.3
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 6.3e-153 545.8 864 39.9
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 2.7e-132 477.2 482 57.1
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 3.7e-121 440.3 413 59.8
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.5e-119 433.7 375 62.1
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 4.0e-107 393.7 955 32.9
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.2e-103 382.1 348 58.0
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 4.7e-100 370.2 917 29.8
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 7.6e-98 362.8 960 29.1
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.7e-97 361.7 432 51.9
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 6.4e-97 359.8 310 63.5
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 9.6e-93 345.9 290 64.5
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 3.0e-86 324.3 465 46.5
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 5.6e-85 320.1 377 54.1
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 3.4e-82 310.8 950 27.9
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.4e-80 305.4 268 61.6
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 4.6e-71 273.9 256 58.6
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 5.1e-70 270.4 219 67.6
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.0e-62 244.6 182 70.9
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 1.6e-60 238.8 399 42.9
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 1.6e-55 222.2 164 71.3
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 3.1e-51 208.0 194 61.3
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.0e-51 206.5 326 39.9
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.8e-49 201.1 266 43.6
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 1.2e-42 179.5 133 70.7
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 2.0e-37 162.2 133 65.4
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 4.4e-37 161.0 129 69.0
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 1.4e-35 156.0 137 63.5
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.8e-35 155.6 177 45.2
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 1.2e-34 152.9 125 66.4
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 2.0e-29 135.6 97 74.2
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 3.7e-28 131.3 97 72.2
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 7.0e-19 100.5 64 81.2
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 2.9e-17 95.1 150 44.7
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 9.5e-16 90.1 128 46.1
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 9.5e-16 90.1 177 39.0
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 6.1e-15 87.4 174 39.7
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.4e-13 81.3 48 77.1
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.7e-12 79.3 197 28.9
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 8.3e-12 77.0 68 63.2
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.4e-11 76.3 111 42.3
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 3.5e-10 71.6 63 57.1
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 1.8e-06 59.3 60 53.3
Hma1.2p1_0158F.1_g069880 Hydrangea macrophylla HOM05D001181 ORTHO05D007712 2.3e-06 58.9 44 70.5


User provided reference genes

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