Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 3.1e-306 1054.3 530 100.0
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 1.4e-208 729.9 440 83.0
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 2.3e-200 702.6 441 79.4
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 4.0e-200 701.8 441 79.4
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 6.8e-192 674.5 420 78.3
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 8.8e-192 674.1 439 77.0
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 1.7e-190 669.8 431 77.0
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 2.2e-190 669.5 431 76.8
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 2.3e-184 649.4 423 76.8
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 4.0e-184 648.7 430 74.7
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 8.8e-184 647.5 428 75.2
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 1.5e-183 646.7 409 77.8
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 3.4e-183 645.6 430 73.7
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 5.7e-183 644.8 439 73.8
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 7.5e-183 644.4 416 77.6
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 1.3e-182 643.7 444 73.2
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 2.8e-182 642.5 448 70.8
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 2.8e-182 642.5 395 81.8
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 2.8e-182 642.5 430 74.4
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 3.7e-182 642.1 430 74.0
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 4.9e-182 641.7 432 74.8
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 4.9e-182 641.7 429 74.4
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 1.1e-181 640.6 442 72.4
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 1.4e-181 640.2 448 70.8
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 4.1e-181 638.6 431 74.2
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 5.4e-181 638.3 418 75.4
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 7.0e-181 637.9 433 73.9
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 9.2e-181 637.5 407 76.9
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 2.7e-180 636.0 433 73.4
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 3.5e-180 635.6 427 73.1
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 4.5e-180 635.2 443 72.5
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 7.7e-180 634.4 433 73.4
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.8e-179 632.1 400 77.2
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 3.8e-179 632.1 436 72.0
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 1.1e-178 630.6 442 71.0
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 1.1e-178 630.6 435 71.3
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 1.9e-178 629.8 409 75.6
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 4.3e-178 628.6 432 72.5
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 9.5e-178 627.5 443 70.2
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 1.6e-177 626.7 445 71.2
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 2.1e-177 626.3 433 73.2
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 4.7e-177 625.2 442 71.0
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 8.0e-177 624.4 434 73.3
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 1.4e-176 623.6 442 70.1
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 1.4e-176 623.6 442 69.7
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 1.5e-175 620.2 429 70.6
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 2.0e-175 619.8 428 72.4
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 3.7e-174 615.5 435 70.6
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 8.3e-174 614.4 406 76.4
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 2.4e-173 612.8 456 67.8
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 2.4e-173 612.8 429 69.5
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 3.2e-173 612.5 423 73.8
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 7.0e-173 611.3 434 70.0
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 9.2e-173 610.9 406 76.1
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 1.2e-172 610.5 451 67.8
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 3.5e-172 609.0 424 72.6
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 3.5e-172 609.0 442 71.0
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 3.5e-172 609.0 411 73.5
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 5.0e-171 605.1 419 71.4
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 1.1e-170 604.0 489 65.0
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 1.5e-170 603.6 425 71.1
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 3.3e-170 602.4 423 71.6
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 5.6e-170 601.7 422 71.8
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 1.6e-169 600.1 400 74.5
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 2.8e-169 599.4 430 70.5
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 3.6e-169 599.0 409 73.6
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 1.0e-168 597.4 419 70.9
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 3.4e-167 592.4 421 69.8
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 3.2e-165 585.9 416 70.4
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 3.2e-165 585.9 412 72.8
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 2.0e-164 583.2 519 60.9
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.7e-164 582.8 412 72.1
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 1.7e-163 580.1 431 68.4
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 3.0e-163 579.3 417 69.5
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 3.0e-163 579.3 393 72.0
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 6.6e-163 578.2 413 70.9
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 6.6e-163 578.2 440 67.0
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 9.5e-162 574.3 431 66.8
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 3.6e-161 572.4 429 66.9
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 1.8e-160 570.1 388 70.6
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 1.8e-160 570.1 428 66.1
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 1.3e-158 563.9 408 69.6
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 4.9e-158 562.0 421 68.4
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.4e-157 560.5 404 68.3
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 3.5e-156 555.8 373 71.8
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 3.9e-155 552.4 377 74.8
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 3.3e-154 549.3 349 78.8
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 1.1e-152 544.3 394 70.3
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 6.4e-150 535.0 413 66.6
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 6.4e-150 535.0 413 66.6
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.2e-149 532.7 369 75.1
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 5.6e-146 521.9 394 64.7
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 5.8e-143 511.9 398 64.1
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 8.7e-139 498.0 326 74.8
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 2.0e-135 486.9 419 61.6
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 1.3e-134 484.2 421 59.1
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 5.3e-128 462.2 391 59.3
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 1.2e-124 451.1 313 71.2
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 5.6e-122 442.2 400 59.2
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 4.5e-119 432.6 301 72.8
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 2.6e-111 406.8 299 65.2
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.8e-107 394.0 394 53.3
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 3.9e-107 392.9 316 68.7
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.4e-101 374.4 252 77.0
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.0e-99 366.7 335 61.8
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 3.0e-91 340.1 380 47.9
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 5.9e-87 325.9 203 82.3
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 7.7e-87 325.5 229 76.9
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 3.7e-81 306.6 219 66.7
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 2.5e-77 293.9 383 45.4
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 8.3e-65 252.3 380 39.7
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.3e-54 218.4 134 80.6
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 3.1e-51 207.2 120 84.2
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 3.5e-47 193.7 111 84.7
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 6.6e-46 189.5 118 79.7
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.6e-44 184.9 118 78.0
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.1e-43 180.6 118 76.3
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 5.2e-35 153.3 103 70.9
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.2e-33 147.9 103 76.7
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 5.4e-32 143.3 98 71.4
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 1.6e-31 141.7 98 70.4
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 3.1e-27 127.5 248 42.7
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 2.2e-25 121.3 81 74.1
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 8.4e-25 119.4 82 64.6
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 2.1e-23 114.8 84 63.1
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 2.7e-23 114.4 103 61.2
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 6.6e-22 109.8 131 51.1
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 7.3e-21 106.3 77 61.0
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 8.1e-20 102.8 131 50.4
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 9.3e-16 89.4 49 77.6
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 1.3e-12 79.0 51 70.6
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 5.3e-11 73.6 41 70.7
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 9.9e-10 69.3 41 75.6


User provided reference genes

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