Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045489 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D109349 1.1e-40 169.5 85 100.0
Actinidia02414 Actinidia chinensis HOM05D001206 ORTHO05D002068 7.2e-11 70.5 46 80.4
EL10Ac9g22131 Beta vulgaris HOM05D001206 ORTHO05D002068 2.1e-10 68.9 46 78.3
Rhsim05G0095600 Rhododendron simsii HOM05D001206 ORTHO05D002068 4.6e-10 67.8 46 76.1
vmacro19593 Vaccinium macrocarpon HOM05D001206 ORTHO05D002068 4.6e-10 67.8 48 72.9
CSS0023121 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 1.8e-09 65.9 48 68.8
CSS0046406 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 1.8e-09 65.9 48 68.8
Actinidia00326 Actinidia chinensis HOM05D001206 ORTHO05D002068 2.3e-09 65.5 45 73.3
FvH4_2g11120 Fragaria vesca HOM05D001206 ORTHO05D002068 3.0e-09 65.1 46 76.1
FAN24G1517 Fragaria x ananassa HOM05D001206 ORTHO05D002068 3.0e-09 65.1 46 76.1
Gohir.A13G049200 Gossypium hirsutum HOM05D001206 ORTHO05D002068 3.0e-09 65.1 46 71.7
PGR142G3443 Punica granatum HOM05D001206 ORTHO05D002068 3.0e-09 65.1 46 71.7
Dinv08963 Davidia involucrata HOM05D001206 ORTHO05D002068 3.9e-09 64.7 46 71.7
Thecc.02G124600 Theobroma cacao HOM05D001206 ORTHO05D002068 3.9e-09 64.7 46 71.7
FAN27G1668 Fragaria x ananassa HOM05D001206 ORTHO05D002068 5.1e-09 64.3 46 76.1
FAN15G0254 Fragaria x ananassa HOM05D001206 ORTHO05D002068 6.7e-09 63.9 46 76.1
Gorai.013G053300 Gossypium raimondii HOM05D001206 ORTHO05D002068 6.7e-09 63.9 58 62.1
TAR628G1628 Trochodendron aralioides HOM05D001206 ORTHO05D002068 6.7e-09 63.9 46 71.7
Nn1g05689 Nelumbo nucifera HOM05D001206 ORTHO05D002068 8.8e-09 63.5 46 71.7
Haze_10389 Corylus avellana HOM05D001206 ORTHO05D002068 1.1e-08 63.2 44 72.7
ECA234G3918 Erigeron canadensis HOM05D001206 ORTHO05D002068 1.1e-08 63.2 46 67.4
Gohir.D13G047700 Gossypium hirsutum HOM05D001206 ORTHO05D002068 1.1e-08 63.2 46 71.7
Lsat_1_v5_gn_5_110881 Lactuca sativa HOM05D001206 ORTHO05D002068 1.5e-08 62.8 46 67.4
Lj9A342T54 Lonicera japonica HOM05D001206 ORTHO05D002068 1.5e-08 62.8 46 67.4
Glyma.13G254200 Glycine max HOM05D001206 ORTHO05D002068 2.5e-08 62.0 46 67.4
Glyma.15G060700 Glycine max HOM05D001206 ORTHO05D002068 2.5e-08 62.0 46 67.4
Nitab4.5_0009020g0080 Nicotiana tabacum HOM05D001206 ORTHO05D002068 2.5e-08 62.0 48 68.8
Phvul.006G199100 Phaseolus vulgaris HOM05D001206 ORTHO05D002068 2.5e-08 62.0 46 67.4
Sopen01g048720 Solanum pennellii HOM05D001206 ORTHO05D002068 2.5e-08 62.0 48 68.8
CAN.G504.52 Capsicum annuum HOM05D001206 ORTHO05D002068 3.3e-08 61.6 46 69.6
PGSC0003DMG402003118 Solanum tuberosum HOM05D001206 ORTHO05D002068 3.3e-08 61.6 48 68.8
Cc02_g20550 Coffea canephora HOM05D001206 ORTHO05D002068 4.3e-08 61.2 48 66.7
Prupe.8G076300 Prunus persica HOM05D001206 ORTHO05D002068 4.3e-08 61.2 46 71.7
RcHm_v2.0_Chr6g0269381 Rosa chinensis HOM05D001206 ORTHO05D002068 4.3e-08 61.2 46 71.7
vmacro01903 Vaccinium macrocarpon HOM05D001206 ORTHO05D002068 4.3e-08 61.2 48 66.7
arahy.Tifrunner.gnm1.ann1.3DT0RH Arachis hypogaea HOM05D001206 ORTHO05D002068 5.7e-08 60.8 46 65.2
TWI14G1249 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 5.7e-08 60.8 46 67.4
VMungo0540G1701 Vigna mungo HOM05D001206 ORTHO05D002068 5.7e-08 60.8 46 65.2
ClCG09G016410 Citrullus lanatus HOM05D001206 ORTHO05D002068 7.4e-08 60.5 46 63.0
MELO3C018563.2 Cucumis melo HOM05D001206 ORTHO05D002068 7.4e-08 60.5 46 63.0
DCAR_029282 Daucus carota HOM05D001206 ORTHO05D002068 7.4e-08 60.5 46 63.0
HanXRQChr10g0291231 Helianthus annuus HOM05D001206 ORTHO05D002068 7.4e-08 60.5 46 63.0
Manes.10G094600 Manihot esculenta HOM05D001206 ORTHO05D002068 7.4e-08 60.5 46 65.2
Peaxi162Scf00016g03464 Petunia axillaris HOM05D001206 ORTHO05D002068 7.4e-08 60.5 48 66.7
CsaV3_7G007390 Cucumis sativus L. HOM05D001206 ORTHO05D002068 9.7e-08 60.1 46 63.0
Lalb_Chr20g0122751 Lupinus albus HOM05D001206 ORTHO05D002068 9.7e-08 60.1 46 69.6
QL11p026734 Quercus lobata HOM05D001206 ORTHO05D002068 9.7e-08 60.1 46 67.4
arahy.Tifrunner.gnm1.ann1.02U3XB Arachis hypogaea HOM05D001206 ORTHO05D002068 1.3e-07 59.7 46 63.0
Potri.001G285900 Populus trichocarpa HOM05D001206 ORTHO05D002068 1.3e-07 59.7 46 67.4
AUR62030916 Chenopodium quinoa HOM05D001206 ORTHO05D002068 1.7e-07 59.3 46 65.2
Gohir.A12G017600 Gossypium hirsutum HOM05D001206 ORTHO05D002068 1.7e-07 59.3 46 67.4
Gohir.D12G018200 Gossypium hirsutum HOM05D001206 ORTHO05D002068 1.7e-07 59.3 46 67.4
Gorai.008G018500 Gossypium raimondii HOM05D001206 ORTHO05D002068 1.7e-07 59.3 46 67.4
Nitab4.5_0010352g0080 Nicotiana tabacum HOM05D001206 ORTHO05D002068 1.7e-07 59.3 48 62.5
SalBow6G5084 Salvia bowleyana HOM05D001206 ORTHO05D002068 1.7e-07 59.3 48 62.5
MSTRG.16638 Avicennia marina HOM05D001206 ORTHO05D002068 2.2e-07 58.9 48 64.6
Sp2g27530 Schrenkiella parvula HOM05D001206 ORTHO05D002068 2.2e-07 58.9 56 57.1
Solyc01g106360.3 Solanum lycopersicum HOM05D001206 ORTHO05D002068 2.2e-07 58.9 48 66.7
Sopen01g048730 Solanum pennellii HOM05D001206 ORTHO05D002068 2.2e-07 58.9 48 66.7
GSVIVG01038529001 Vitis vinifera HOM05D001206 ORTHO05D002068 2.2e-07 58.9 46 65.2
Sed0003330 Sechium edule HOM05D001206 ORTHO05D002068 2.8e-07 58.5 46 63.0
Ah.01g007260 Amaranthus hybridus HOM05D001206 ORTHO05D002068 3.7e-07 58.2 46 67.4
Carub.0008s2524 Capsella rubella HOM05D001206 ORTHO05D002068 3.7e-07 58.2 56 57.1
AUR62027076 Chenopodium quinoa HOM05D001206 ORTHO05D002068 3.7e-07 58.2 46 63.0
HanXRQChr08g0227101 Helianthus annuus HOM05D001206 ORTHO05D002068 3.7e-07 58.2 45 64.4
Lj5A225G70 Lonicera japonica HOM05D001206 ORTHO05D002068 3.7e-07 58.2 48 64.6
SGA_v2.0_scaffold342G49396 Striga asiatica HOM05D001206 ORTHO05D002068 3.7e-07 58.2 68 51.5
TWI23G1316 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 3.7e-07 58.2 46 63.0
Medtr2g010180 Medicago truncatula HOM05D001206 ORTHO05D002068 4.8e-07 57.8 46 58.7
TPR.G32630 Trifolium pratense HOM05D001206 ORTHO05D002068 4.8e-07 57.8 45 60.0
MD05G1050200 Malus domestica HOM05D001206 ORTHO05D002068 6.3e-07 57.4 46 65.2
PSO700G0067 Papaver somniferum HOM05D001206 ORTHO05D002068 6.3e-07 57.4 46 65.2
PSO761G0240 Papaver somniferum HOM05D001206 ORTHO05D002068 6.3e-07 57.4 46 65.2
Psat1g212600 Pisum sativum HOM05D001206 ORTHO05D002068 6.3e-07 57.4 46 58.7
CAN.G504.54 Capsicum annuum HOM05D001206 ORTHO05D002068 8.2e-07 57.0 48 64.6
ECA236G0460 Erigeron canadensis HOM05D001206 ORTHO05D002068 8.2e-07 57.0 47 59.6
Thhalv10003835m.g Eutrema salsugineum HOM05D001206 ORTHO05D002068 8.2e-07 57.0 56 55.4
Peaxi162Scf00299g00236 Petunia axillaris HOM05D001206 ORTHO05D002068 8.2e-07 57.0 48 64.6
BraA06t26053Z Brassica rapa HOM05D001206 ORTHO05D002068 1.1e-06 56.6 56 53.6
CiPaw.05G026500 Carya illinoinensis HOM05D001206 ORTHO05D002068 1.1e-06 56.6 46 67.4
Lj6g0027071 Lotus japonicus HOM05D001206 ORTHO05D002068 1.1e-06 56.6 46 58.7
MSTRG.20250 Avicennia marina HOM05D001206 ORTHO05D002068 1.4e-06 56.2 46 60.9
Migut.B00517 Erythranthe guttata HOM05D001206 ORTHO05D002068 1.4e-06 56.2 46 60.9
HanXRQChr08g0227111 Helianthus annuus HOM05D001206 ORTHO05D002068 1.4e-06 56.2 46 60.9
AL8G41810 Arabidopsis lyrata HOM05D001206 ORTHO05D002068 1.8e-06 55.8 46 60.9
BcaC01g02682 Brassica carinata HOM05D001206 ORTHO05D002068 1.8e-06 55.8 56 53.6
A06p31100 Brassica napus HOM05D001206 ORTHO05D002068 1.8e-06 55.8 56 53.6
C03p61820 Brassica napus HOM05D001206 ORTHO05D002068 1.8e-06 55.8 56 53.6
BolC3t18443H Brassica oleracea HOM05D001206 ORTHO05D002068 1.8e-06 55.8 56 53.6
CDE07G0825 Ceratophyllum demersum HOM05D001206 ORTHO05D002068 1.8e-06 55.8 45 57.8
AT5G64440 Arabidopsis thaliana HOM05D001206 ORTHO05D002068 2.4e-06 55.5 46 60.9
CiPaw.05G026300 Carya illinoinensis HOM05D001206 ORTHO05D002068 2.4e-06 55.5 46 65.2
Aa31LG1G17460 Aethionema arabicum HOM05D001206 ORTHO05D002068 3.1e-06 55.1 46 58.7
ATR0800G073 Amborella trichopoda HOM05D001206 ORTHO05D002068 3.1e-06 55.1 47 61.7
Aqoxy425s001 Aquilegia oxysepala HOM05D001206 ORTHO05D002068 3.1e-06 55.1 70 50.0
Aqoxy6G00631 Aquilegia oxysepala HOM05D001206 ORTHO05D002068 3.1e-06 55.1 70 50.0
Sabra16G0178300 Salix brachista HOM05D001206 ORTHO05D002068 3.1e-06 55.1 46 63.0
CANSAT54G1477 Cannabis sativa HOM05D001206 ORTHO05D002068 4.1e-06 54.7 46 63.0
Oeu059886.1 Olea europaea HOM05D001206 ORTHO05D002068 4.1e-06 54.7 46 58.7
CDE04G3774 Ceratophyllum demersum HOM05D001206 ORTHO05D002068 5.3e-06 54.3 45 55.6
Eucgr.I02570 Eucalyptus grandis HOM05D001206 ORTHO05D002068 6.9e-06 53.9 46 58.7
CARHR278410 Cardamine hirsuta HOM05D001206 ORTHO05D002068 9.1e-06 53.5 46 56.5
Eucgr.I02568 Eucalyptus grandis HOM05D001206 ORTHO05D002068 9.1e-06 53.5 46 60.9
MBI16_g44751_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D002068 9.1e-06 53.5 46 52.2


User provided reference genes

Program Settings